Wall clock time and date at job start Wed Apr 1 2020 03:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.20822 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00260 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00156 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46810 * 180.02562 * 11 10 8 13 13 O 1.21274 * 120.00397 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99914 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00304 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47515 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99562 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00144 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47238 * 90.00115 * 20 18 16 22 22 H 1.48494 * 109.47309 * 210.00153 * 20 18 16 23 23 H 1.48499 * 109.47211 * 330.00162 * 20 18 16 24 24 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 25 25 O 1.34459 * 110.15123 * 0.02562 * 24 6 5 26 26 C 1.34799 * 110.89002 * 359.97438 * 25 24 6 27 27 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 28 28 C 1.50704 * 120.08560 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 30 30 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 31 31 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 32 32 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 34 34 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 35 35 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 36 36 H 1.09002 * 109.46837 * 299.99545 * 11 10 8 37 37 H 1.08996 * 109.47296 * 60.00189 * 11 10 8 38 38 H 0.97003 * 119.99841 * 359.97438 * 14 12 11 39 39 H 1.09002 * 109.46896 * 299.99841 * 15 14 12 40 40 H 1.08998 * 109.47303 * 60.00143 * 15 14 12 41 41 H 0.96997 * 120.00113 * 179.97438 * 19 18 16 42 42 H 1.08002 * 124.92585 * 179.97438 * 24 6 5 43 43 H 1.08996 * 109.47259 * 270.28998 * 28 27 2 44 44 H 1.08997 * 109.46914 * 30.29460 * 28 27 2 45 45 H 1.09002 * 109.46795 * 150.29010 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5038 0.5965 2.3450 10 8 8.1750 1.8823 1.6836 11 6 8.4127 2.2327 3.0725 12 6 9.5742 3.1891 3.1575 13 8 10.1457 3.5404 2.1471 14 7 9.9779 3.6541 4.3563 15 6 11.1074 4.5834 4.4391 16 6 11.3533 4.9483 5.8804 17 1 10.7307 4.5294 6.6573 18 6 12.3736 5.8159 6.2075 19 7 13.1327 6.3248 5.2617 20 14 12.6779 6.2687 7.9941 21 1 13.6387 5.3069 8.5918 22 1 13.2406 7.6410 8.0681 23 1 11.3965 6.2182 8.7428 24 6 5.7463 -1.6688 0.0076 25 8 4.5036 -2.1822 0.0021 26 6 3.5785 -1.2018 0.0007 27 6 2.1892 -1.1979 -0.0057 28 6 1.4299 -2.4997 -0.0114 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6445 2.1358 0.0004 33 1 4.0906 2.1649 0.0099 34 1 7.7322 0.1314 -0.4163 35 1 6.6121 1.5060 -0.5721 36 1 7.5218 2.7061 3.4853 37 1 8.6416 1.3312 3.6407 38 1 9.5206 3.3735 5.1644 39 1 11.9984 4.1099 4.0267 40 1 10.8787 5.4848 3.8705 41 1 13.8503 6.9355 5.4919 42 1 6.6559 -2.2512 0.0094 43 1 1.2428 -2.8156 1.0148 44 1 0.4802 -2.3641 -0.5288 45 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005301549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:02 Heat of formation + Delta-G solvation = -106.018557 kcal Electronic energy + Delta-G solvation = -28293.744183 eV Core-core repulsion = 24049.485726 eV Total energy + Delta-G solvation = -4244.258457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.80361 -40.53796 -38.80610 -38.73029 -36.46874 -34.78087 -34.26520 -32.76555 -32.42331 -31.73513 -29.71367 -28.44111 -27.70596 -26.53211 -26.39566 -23.14411 -22.71034 -21.66783 -21.46643 -19.97004 -19.65643 -17.86989 -17.65907 -17.37457 -17.24462 -16.67735 -16.48478 -16.06330 -15.65867 -15.40249 -15.02206 -14.82554 -14.74063 -14.32966 -14.18039 -13.86610 -13.62483 -13.17249 -13.10287 -13.02480 -12.88740 -12.81874 -12.51027 -12.43550 -12.14823 -12.00799 -11.92254 -11.83685 -11.75132 -11.08955 -11.03005 -10.93349 -10.70751 -10.68837 -10.35892 -10.01916 -9.45654 -9.19800 -8.80787 -8.79771 -8.29548 -8.00706 -6.21016 -4.28543 0.59703 1.08245 1.82090 2.10717 2.47367 2.60793 3.15856 3.22175 3.28497 3.30843 3.37581 3.99226 4.11454 4.14412 4.32094 4.44035 4.48123 4.62903 4.76118 4.80533 4.85414 5.02035 5.13814 5.15065 5.15363 5.17721 5.19699 5.22077 5.25853 5.26092 5.32689 5.37867 5.44005 5.56990 5.69998 5.96413 6.05500 6.10105 6.20319 6.34084 6.36455 6.86977 7.20746 7.28941 7.44014 7.57667 7.68104 7.90387 8.48128 8.69407 8.94485 9.37958 10.89080 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.001656 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.822098 B =16900.951095 C =17369.147506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 C -0.128 4.128 4 C -0.071 4.071 5 C -0.114 4.114 6 C -0.170 4.170 7 C -0.038 4.038 8 C 0.458 3.542 9 O -0.501 6.501 10 O -0.329 6.329 11 C 0.049 3.951 12 C 0.500 3.500 13 O -0.535 6.535 14 N -0.706 5.706 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.028 3.972 25 O -0.189 6.189 26 C 0.056 3.944 27 C -0.075 4.075 28 C -0.113 4.113 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.393 0.607 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.210 0.790 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.200 -16.978 -12.941 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.089 4.089 5 C -0.115 4.115 6 C -0.171 4.171 7 C -0.076 4.076 8 C 0.300 3.700 9 O -0.389 6.389 10 O -0.244 6.244 11 C -0.028 4.028 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.357 5.357 15 C 0.131 3.869 16 C -0.584 4.584 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.038 4.038 25 O -0.090 6.090 26 C 0.009 3.991 27 C -0.076 4.076 28 C -0.169 4.169 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.226 0.774 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.226 0.774 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.860 -16.963 -13.398 32.195 hybrid contribution 0.293 0.356 1.616 1.681 sum -23.567 -16.607 -11.782 31.145 Atomic orbital electron populations 1.20822 0.90376 1.03216 1.02568 1.19516 0.96114 0.91377 0.99655 1.20647 0.93749 0.97666 1.02591 1.20251 0.93790 0.96418 0.98431 1.19648 0.92193 0.94091 1.05561 1.20368 0.92386 0.93731 1.10643 1.19532 0.96765 1.00105 0.91183 1.23676 0.77561 0.76160 0.92573 1.90692 1.48628 1.52661 1.46882 1.86558 1.49332 1.58859 1.29700 1.22856 0.99351 1.00043 0.80572 1.19892 0.84569 0.82267 0.85026 1.90705 1.56534 1.58956 1.35002 1.46372 1.35481 1.47287 1.06531 1.19180 0.82778 0.87523 0.97444 1.21211 1.16740 1.28767 0.91700 0.91765 1.24949 0.95413 0.95472 0.98131 1.69971 1.19036 1.30686 1.32473 0.86387 0.78559 0.77876 0.83926 1.20425 1.20960 1.19728 1.23756 0.86059 0.93239 1.00702 1.83993 1.14185 1.34707 1.76088 1.19302 0.90433 0.85628 1.03702 1.18553 0.87722 0.96231 1.05055 1.20758 0.99887 0.93660 1.02640 0.90843 0.91085 0.91102 0.85287 0.85612 0.86154 0.86316 0.88591 0.88555 0.77427 0.95237 0.95234 0.92364 0.77393 0.90971 0.90906 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.16 36.00 0.33 -0.28 16 2 C -0.07 -0.57 5.88 -104.58 -0.61 -1.18 16 3 C -0.13 -1.15 9.62 -39.94 -0.38 -1.53 16 4 C -0.07 -0.74 10.05 -39.69 -0.40 -1.13 16 5 C -0.11 -1.32 6.38 -105.16 -0.67 -1.99 16 6 C -0.17 -1.76 4.85 -102.67 -0.50 -2.26 16 7 C -0.04 -0.36 6.36 -29.04 -0.18 -0.54 16 8 C 0.46 6.02 7.95 36.01 0.29 6.31 16 9 O -0.50 -7.79 15.78 -18.75 -0.30 -8.09 16 10 O -0.33 -5.05 9.75 -45.91 -0.45 -5.50 16 11 C 0.05 0.75 5.94 36.01 0.21 0.96 16 12 C 0.50 9.96 7.91 -10.99 -0.09 9.87 16 13 O -0.53 -12.96 16.50 -14.10 -0.23 -13.20 16 14 N -0.71 -14.57 5.55 -61.47 -0.34 -14.91 16 15 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 16 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 20 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.03 0.25 11.89 29.24 0.35 0.60 16 25 O -0.19 -2.06 10.58 3.91 0.04 -2.02 16 26 C 0.06 0.64 7.09 -38.47 -0.27 0.37 16 27 C -0.08 -0.72 5.89 -104.50 -0.62 -1.34 16 28 C -0.11 -0.78 9.17 36.01 0.33 -0.45 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.33 6.68 -51.93 -0.35 -0.02 16 31 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 37 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.37 6.70 -51.93 -0.35 0.02 16 45 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -35.96 393.69 -8.35 -44.31 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.06 Total: 2.21 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.66 Total: 0.66 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.91 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.93 Total: -28.80 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.96 -8.35 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005301549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.713 kcal (2) G-P(sol) polarization free energy of solvation -35.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds