Wall clock time and date at job start Wed Apr 1 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.20822 * 120.00112 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00260 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00156 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46810 * 180.02562 * 11 10 8 13 13 O 1.21274 * 120.00397 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99914 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00304 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47515 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99562 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00144 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00284 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00003 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47238 * 90.00115 * 20 18 16 22 22 H 1.48494 * 109.47309 * 210.00153 * 20 18 16 23 23 H 1.48499 * 109.47211 * 330.00162 * 20 18 16 24 24 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 25 25 O 1.34459 * 110.15123 * 0.02562 * 24 6 5 26 26 C 1.34799 * 110.89002 * 359.97438 * 25 24 6 27 27 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 28 28 C 1.50704 * 120.08560 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 30 30 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 31 31 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 32 32 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 34 34 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 35 35 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 36 36 H 1.09002 * 109.46837 * 299.99545 * 11 10 8 37 37 H 1.08996 * 109.47296 * 60.00189 * 11 10 8 38 38 H 0.97003 * 119.99841 * 359.97438 * 14 12 11 39 39 H 1.09002 * 109.46896 * 299.99841 * 15 14 12 40 40 H 1.08998 * 109.47303 * 60.00143 * 15 14 12 41 41 H 0.96997 * 120.00113 * 179.97438 * 19 18 16 42 42 H 1.08002 * 124.92585 * 179.97438 * 24 6 5 43 43 H 1.08996 * 109.47259 * 270.28998 * 28 27 2 44 44 H 1.08997 * 109.46914 * 30.29460 * 28 27 2 45 45 H 1.09002 * 109.46795 * 150.29010 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5038 0.5965 2.3450 10 8 8.1750 1.8823 1.6836 11 6 8.4127 2.2327 3.0725 12 6 9.5742 3.1891 3.1575 13 8 10.1457 3.5404 2.1471 14 7 9.9779 3.6541 4.3563 15 6 11.1074 4.5834 4.4391 16 6 11.3533 4.9483 5.8804 17 1 10.7307 4.5294 6.6573 18 6 12.3736 5.8159 6.2075 19 7 13.1327 6.3248 5.2617 20 14 12.6779 6.2687 7.9941 21 1 13.6387 5.3069 8.5918 22 1 13.2406 7.6410 8.0681 23 1 11.3965 6.2182 8.7428 24 6 5.7463 -1.6688 0.0076 25 8 4.5036 -2.1822 0.0021 26 6 3.5785 -1.2018 0.0007 27 6 2.1892 -1.1979 -0.0057 28 6 1.4299 -2.4997 -0.0114 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6445 2.1358 0.0004 33 1 4.0906 2.1649 0.0099 34 1 7.7322 0.1314 -0.4163 35 1 6.6121 1.5060 -0.5721 36 1 7.5218 2.7061 3.4853 37 1 8.6416 1.3312 3.6407 38 1 9.5206 3.3735 5.1644 39 1 11.9984 4.1099 4.0267 40 1 10.8787 5.4848 3.8705 41 1 13.8503 6.9355 5.4919 42 1 6.6559 -2.2512 0.0094 43 1 1.2428 -2.8156 1.0148 44 1 0.4802 -2.3641 -0.5288 45 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005301549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:01 Heat of formation + Delta-G solvation = -127.916812 kcal Electronic energy + Delta-G solvation = -28294.693762 eV Core-core repulsion = 24049.485726 eV Total energy + Delta-G solvation = -4245.208036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.51975 -41.69033 -40.37472 -39.45015 -37.64519 -36.19224 -35.51795 -34.42597 -33.44555 -32.34600 -31.03253 -29.58954 -28.44384 -28.09402 -26.97140 -24.71110 -23.79455 -22.69969 -22.14966 -21.65308 -20.47143 -19.23617 -18.88736 -18.21095 -18.13178 -17.75726 -17.71110 -17.26259 -16.99353 -16.71367 -16.39052 -16.18110 -15.80687 -15.37475 -14.84679 -14.78733 -14.67177 -14.52410 -14.08121 -14.03769 -13.87154 -13.62789 -13.59607 -13.56845 -13.41065 -12.99768 -12.94733 -12.73527 -12.71959 -12.56991 -12.43778 -12.23942 -11.91354 -11.76445 -11.72218 -11.50738 -10.94083 -10.82485 -10.71270 -9.94146 -9.52545 -8.97654 -8.30283 -6.46961 -0.09108 0.35673 0.98166 1.09494 1.43573 1.45664 1.54045 1.54985 1.58685 1.82452 2.34370 2.57593 2.70097 3.04948 3.42738 3.47190 3.64227 3.76446 3.83721 3.91614 4.01881 4.04154 4.10128 4.21544 4.26245 4.35975 4.51702 4.57700 4.67756 4.73918 4.80732 4.84164 4.86070 5.05932 5.09267 5.17653 5.21175 5.26047 5.29894 5.40318 5.40859 5.45239 5.55980 5.61984 5.71645 5.81322 6.16380 6.59044 6.62492 6.77589 7.19448 7.34370 8.81727 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.001656 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.822098 B =16900.951095 C =17369.147506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.093 4.093 5 C -0.139 4.139 6 C -0.191 4.191 7 C -0.031 4.031 8 C 0.463 3.537 9 O -0.527 6.527 10 O -0.346 6.346 11 C 0.061 3.939 12 C 0.500 3.500 13 O -0.583 6.583 14 N -0.699 5.699 15 C 0.266 3.734 16 C -0.558 4.558 17 H 0.085 0.915 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.985 3.015 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.256 1.256 24 C 0.032 3.968 25 O -0.200 6.200 26 C 0.028 3.972 27 C -0.089 4.089 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.151 0.849 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.412 0.588 39 H -0.007 1.007 40 H -0.007 1.007 41 H 0.269 0.731 42 H 0.245 0.755 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.035 -18.065 -11.852 33.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.140 4.140 6 C -0.192 4.192 7 C -0.068 4.068 8 C 0.307 3.693 9 O -0.416 6.416 10 O -0.262 6.262 11 C -0.016 4.016 12 C 0.286 3.714 13 O -0.463 6.463 14 N -0.351 5.351 15 C 0.144 3.856 16 C -0.596 4.596 17 H 0.103 0.897 18 C -0.195 4.195 19 N -0.567 5.567 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.180 1.180 24 C -0.033 4.033 25 O -0.101 6.101 26 C -0.018 4.018 27 C -0.089 4.089 28 C -0.167 4.167 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.169 0.831 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.248 0.752 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.078 0.922 42 H 0.261 0.739 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.744 -18.085 -12.296 33.779 hybrid contribution 0.805 0.666 1.194 1.586 sum -24.940 -17.419 -11.102 32.383 Atomic orbital electron populations 1.20895 0.88014 1.04189 1.03693 1.19938 0.97840 0.90858 0.98570 1.20993 0.93497 0.98891 1.01571 1.20474 0.94666 0.96423 0.99538 1.20011 0.93170 0.94635 1.06175 1.20552 0.92216 0.94465 1.12013 1.19666 0.97613 1.00759 0.88757 1.24383 0.76241 0.74894 0.93784 1.90680 1.49312 1.53559 1.48001 1.86566 1.50438 1.59696 1.29493 1.22691 0.97601 0.99786 0.81510 1.20678 0.85048 0.81948 0.83738 1.90681 1.58390 1.60678 1.36548 1.46056 1.34405 1.46567 1.08040 1.18637 0.83214 0.86791 0.96989 1.21614 1.17110 1.28801 0.92090 0.89668 1.26038 0.94997 0.95219 1.03202 1.70127 1.19826 1.31528 1.35255 0.85154 0.79020 0.77354 0.77671 1.19629 1.20969 1.18024 1.24498 0.86455 0.93450 0.98866 1.83980 1.14829 1.35036 1.76255 1.19708 0.91341 0.85808 1.04972 1.18997 0.87498 0.97754 1.04667 1.20795 1.00420 0.92303 1.03137 0.89488 0.90137 0.90147 0.83224 0.85204 0.83089 0.85031 0.86324 0.85976 0.75192 0.98858 0.98905 0.92190 0.73858 0.90534 0.88852 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.16 71.23 0.65 -0.31 16 2 C -0.07 -1.15 5.88 -19.84 -0.12 -1.27 16 3 C -0.13 -2.25 9.62 22.04 0.21 -2.04 16 4 C -0.09 -1.93 10.05 22.20 0.22 -1.71 16 5 C -0.14 -3.22 6.38 -20.21 -0.13 -3.35 16 6 C -0.19 -3.81 4.85 -18.60 -0.09 -3.90 16 7 C -0.03 -0.53 6.36 29.10 0.19 -0.34 16 8 C 0.46 11.57 7.95 71.24 0.57 12.14 16 9 O -0.53 -15.77 15.78 21.98 0.35 -15.42 16 10 O -0.35 -10.23 9.75 -45.07 -0.44 -10.67 16 11 C 0.06 1.76 5.94 71.24 0.42 2.19 16 12 C 0.50 19.98 7.91 87.66 0.69 20.67 16 13 O -0.58 -29.07 16.50 15.79 0.26 -28.81 16 14 N -0.70 -28.88 5.55 -466.79 -2.59 -31.47 16 15 C 0.27 14.34 5.43 85.63 0.46 14.81 16 16 C -0.56 -29.87 9.28 25.60 0.24 -29.63 16 17 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 18 C 0.01 0.29 5.46 84.65 0.46 0.75 16 19 N -0.93 -55.30 13.29 21.44 0.28 -55.01 16 20 Si 0.98 41.82 29.54 68.60 2.03 43.84 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 24 C 0.03 0.55 11.89 66.85 0.79 1.34 16 25 O -0.20 -4.30 10.58 -8.93 -0.09 -4.40 16 26 C 0.03 0.65 7.09 22.99 0.16 0.81 16 27 C -0.09 -1.65 5.89 -19.79 -0.12 -1.77 16 28 C -0.11 -1.40 9.17 71.24 0.65 -0.75 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.55 6.68 -2.38 -0.02 0.53 16 31 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.12 2.94 8.13 -2.39 -0.02 2.92 16 37 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 38 H 0.41 13.77 8.32 -92.71 -0.77 13.00 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 42 H 0.25 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.76 6.70 -2.39 -0.02 0.74 16 45 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 Total: -1.00 -81.00 393.69 5.33 -75.67 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.26 Total: 18.64 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.28 Total: 7.63 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -2.30 Total: -86.49 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: 0.07 Total: -59.29 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -81.00 5.33 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005301549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.251 kcal (2) G-P(sol) polarization free energy of solvation -81.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds