Wall clock time and date at job start Wed Apr 1 2020 04:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47031 * 2 1 4 4 C 1.52997 * 109.47443 * 119.99632 * 2 1 3 5 5 H 1.08999 * 109.47193 * 300.00271 * 4 2 1 6 6 C 1.50699 * 109.46964 * 60.00372 * 4 2 1 7 7 O 1.20823 * 120.00126 * 120.00038 * 6 4 2 8 8 O 1.34233 * 120.00020 * 299.99890 * 6 4 2 9 9 C 1.45199 * 116.99887 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.46791 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.47268 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00189 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99683 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47316 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46567 * 120.00478 * 15 13 11 18 18 H 1.48501 * 109.47125 * 239.99941 * 15 13 11 19 19 N 1.46500 * 109.47127 * 180.02562 * 4 2 1 20 20 C 1.34515 * 124.46351 * 300.02279 * 19 4 2 21 21 O 1.21451 * 125.71049 * 0.02562 * 20 19 4 22 22 C 1.47817 * 108.58464 * 179.97438 * 20 19 4 23 23 C 1.38568 * 134.30409 * 179.97438 * 22 20 19 24 24 C 1.38607 * 119.72317 * 180.02562 * 23 22 20 25 25 C 1.38235 * 120.45591 * 0.02562 * 24 23 22 26 26 C 1.38603 * 120.46254 * 0.02562 * 25 24 23 27 27 C 1.38571 * 119.71830 * 359.97438 * 26 25 24 28 28 C 1.34534 * 124.45883 * 120.00525 * 19 4 2 29 29 O 1.21448 * 125.70556 * 359.97438 * 28 19 4 30 30 H 1.08999 * 109.47148 * 300.00069 * 1 2 3 31 31 H 1.08997 * 109.47045 * 60.00322 * 1 2 3 32 32 H 1.09005 * 109.46316 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47641 * 239.99937 * 2 1 3 34 34 H 1.08995 * 109.47121 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46697 * 300.00200 * 3 2 1 36 36 H 1.09002 * 109.46960 * 59.99519 * 3 2 1 37 37 H 1.09000 * 109.47255 * 299.99790 * 9 8 6 38 38 H 1.08994 * 109.47371 * 60.00468 * 9 8 6 39 39 H 1.09004 * 109.47190 * 299.99722 * 10 9 8 40 40 H 1.08997 * 109.47622 * 59.99865 * 10 9 8 41 41 H 0.97002 * 119.99658 * 179.97438 * 14 13 11 42 42 H 1.08001 * 120.13440 * 0.05519 * 23 22 20 43 43 H 1.07994 * 119.77235 * 180.27788 * 24 23 22 44 44 H 1.08001 * 119.76462 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.14506 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5378 -2.1420 1.2493 7 8 2.3230 -3.0603 1.2493 8 8 0.2181 -2.3874 1.2493 9 6 -0.1934 -3.7798 1.2499 10 6 -1.7213 -3.8599 1.2492 11 6 -2.1486 -5.3051 1.2505 12 1 -1.4047 -6.0881 1.2513 13 6 -3.4891 -5.6277 1.2507 14 7 -4.3949 -4.6743 1.2492 15 14 -4.0186 -7.4191 1.2515 16 1 -2.8163 -8.2907 1.2525 17 1 -4.8303 -7.6947 2.4642 18 1 -4.8303 -7.6960 0.0392 19 7 3.5051 -0.7206 1.2495 20 6 4.2666 -1.2743 0.2889 21 8 3.8551 -1.8449 -0.7012 22 6 5.6883 -1.0712 0.6391 23 6 6.8907 -1.4151 0.0425 24 6 8.0853 -1.0634 0.6513 25 6 8.0847 -0.3729 1.8488 26 6 6.8897 -0.0231 2.4577 27 6 5.6878 -0.3681 1.8607 28 6 4.2659 -0.1658 2.2104 29 8 3.8534 0.4055 3.1995 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.1964 -4.2743 0.3602 38 1 0.1962 -4.2735 2.1401 39 1 -2.1115 -3.3653 2.1388 40 1 -2.1107 -3.3663 0.3588 41 1 -5.3379 -4.9013 1.2490 42 1 6.8971 -1.9545 -0.8931 43 1 9.0229 -1.3270 0.1848 44 1 9.0220 -0.1048 2.3136 45 1 6.8953 0.5167 3.3931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021838120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:29 Heat of formation + Delta-G solvation = -108.010521 kcal Electronic energy + Delta-G solvation = -30495.912582 eV Core-core repulsion = 26251.567747 eV Total energy + Delta-G solvation = -4244.344835 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77367 -40.22803 -38.84681 -38.75682 -36.66436 -36.17100 -35.38466 -33.35004 -31.84758 -31.57051 -30.38920 -28.29872 -27.12517 -25.40617 -25.11820 -23.80016 -22.62025 -21.79916 -20.83150 -20.73302 -19.76621 -18.30742 -17.60399 -17.42860 -16.85820 -16.57854 -16.30714 -16.02212 -15.71174 -15.51340 -15.13725 -14.74955 -14.53028 -14.43598 -14.18575 -14.04956 -13.69524 -13.31757 -13.11380 -12.84884 -12.77157 -12.66545 -12.38017 -12.22456 -12.09727 -11.65957 -11.35039 -11.19684 -11.15896 -10.88572 -10.76056 -10.72202 -10.65240 -10.53150 -10.34298 -9.97835 -9.69135 -9.65805 -9.65019 -9.54736 -9.27802 -8.45553 -6.11457 -4.15594 -0.27401 0.53627 1.71084 1.84174 2.37570 2.61992 3.08953 3.19004 3.27244 3.33334 3.35285 3.40411 3.99232 4.18268 4.36473 4.39869 4.41978 4.60707 4.65702 4.72578 4.77468 4.93604 5.01945 5.11473 5.22759 5.25411 5.33310 5.38045 5.51010 5.62237 5.64516 5.72891 5.73422 5.87347 5.98365 6.04847 6.06865 6.12628 6.16900 6.41674 6.55034 6.63243 6.87639 6.97564 7.40817 7.53478 7.60233 7.84147 8.06503 8.22659 8.89854 9.48921 10.99997 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002557 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.208723 B =10948.702375 C =11626.687465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C -0.143 4.143 4 C 0.154 3.846 5 H 0.143 0.857 6 C 0.451 3.549 7 O -0.500 6.500 8 O -0.342 6.342 9 C 0.072 3.928 10 C 0.026 3.974 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.562 5.562 20 C 0.578 3.422 21 O -0.441 6.441 22 C -0.130 4.130 23 C -0.047 4.047 24 C -0.095 4.095 25 C -0.099 4.099 26 C -0.045 4.045 27 C -0.138 4.138 28 C 0.579 3.421 29 O -0.462 6.462 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.213 14.842 -1.263 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.122 4.122 3 C -0.200 4.200 4 C 0.051 3.949 5 H 0.160 0.840 6 C 0.292 3.708 7 O -0.388 6.388 8 O -0.257 6.257 9 C 0.000 4.000 10 C -0.011 4.011 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.304 5.304 20 C 0.366 3.634 21 O -0.310 6.310 22 C -0.133 4.133 23 C -0.065 4.065 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.063 4.063 27 C -0.141 4.141 28 C 0.368 3.632 29 O -0.333 6.333 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 24.662 14.540 -1.273 28.657 hybrid contribution -0.349 -1.224 0.119 1.278 sum 24.313 13.317 -1.153 27.745 Atomic orbital electron populations 1.22063 0.91647 1.05420 1.02420 1.21464 0.98589 0.96402 0.95769 1.21821 1.00416 0.94841 1.02953 1.20999 0.76693 0.92749 1.04468 0.83973 1.23228 0.82771 0.91219 0.73606 1.90660 1.57133 1.46222 1.44810 1.86579 1.22514 1.34447 1.82193 1.23747 0.99878 0.75263 1.01134 1.19178 0.85126 0.97857 0.98936 1.21007 0.92068 0.91215 1.52107 0.92251 1.24973 0.96506 0.97786 0.94853 1.69978 1.00953 1.31998 1.49834 0.86424 0.78713 0.84528 0.77712 1.19607 1.20821 1.20799 1.46259 1.07291 1.53254 1.23645 1.18251 0.86172 0.76920 0.82061 1.90817 1.79014 1.35679 1.25529 1.20585 0.93980 1.01800 0.96974 1.20831 0.89617 0.96400 0.99686 1.21474 0.98082 0.96585 0.95180 1.21455 0.98058 0.96985 0.95245 1.20801 0.89591 0.96548 0.99389 1.20512 0.93725 1.02700 0.97203 1.18341 0.86447 0.76934 0.81470 1.90816 1.79231 1.38104 1.25152 0.91886 0.91707 0.89043 0.89082 0.93427 0.91347 0.91819 0.92106 0.92267 0.95274 0.95226 0.92752 0.83924 0.84025 0.84038 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.68 37.16 0.32 -1.73 16 2 C -0.10 -1.32 2.36 -90.62 -0.21 -1.53 16 3 C -0.14 -1.45 9.04 37.16 0.34 -1.12 16 4 C 0.15 2.25 2.30 -69.08 -0.16 2.09 16 5 H 0.14 1.89 7.58 -51.93 -0.39 1.49 16 6 C 0.45 8.38 6.91 36.00 0.25 8.63 16 7 O -0.50 -10.59 14.66 -23.96 -0.35 -10.95 16 8 O -0.34 -6.78 7.14 -39.27 -0.28 -7.06 16 9 C 0.07 1.62 5.40 37.16 0.20 1.82 16 10 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 11 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 N -0.56 -7.93 1.55 -111.75 -0.17 -8.11 16 20 C 0.58 8.31 6.68 -12.46 -0.08 8.23 16 21 O -0.44 -7.52 15.57 -8.67 -0.13 -7.65 16 22 C -0.13 -1.43 6.41 -104.83 -0.67 -2.10 16 23 C -0.05 -0.36 10.09 -39.32 -0.40 -0.76 16 24 C -0.10 -0.48 10.04 -39.45 -0.40 -0.88 16 25 C -0.10 -0.48 10.03 -39.45 -0.40 -0.87 16 26 C -0.04 -0.32 10.09 -39.32 -0.40 -0.71 16 27 C -0.14 -1.44 6.40 -104.83 -0.67 -2.11 16 28 C 0.58 7.57 8.02 -12.45 -0.10 7.47 16 29 O -0.46 -6.73 17.43 5.41 0.09 -6.64 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.46 5.32 -51.93 -0.28 1.19 16 33 H 0.09 1.30 6.83 -51.93 -0.35 0.94 16 34 H 0.05 0.48 7.60 -51.93 -0.39 0.09 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 45 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -34.38 383.62 -8.32 -42.70 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.03 Total: -2.48 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.94 Total: 3.43 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.56 Total: -33.66 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.67 Total: -32.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.38 -8.32 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021838120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.310 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds