Wall clock time and date at job start Wed Apr 1 2020 04:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47031 * 2 1 4 4 C 1.52997 * 109.47443 * 119.99632 * 2 1 3 5 5 H 1.08999 * 109.47193 * 300.00271 * 4 2 1 6 6 C 1.50699 * 109.46964 * 60.00372 * 4 2 1 7 7 O 1.20823 * 120.00126 * 120.00038 * 6 4 2 8 8 O 1.34233 * 120.00020 * 299.99890 * 6 4 2 9 9 C 1.45199 * 116.99887 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.46791 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.47268 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99630 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00189 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99683 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47316 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46567 * 120.00478 * 15 13 11 18 18 H 1.48501 * 109.47125 * 239.99941 * 15 13 11 19 19 N 1.46500 * 109.47127 * 180.02562 * 4 2 1 20 20 C 1.34515 * 124.46351 * 300.02279 * 19 4 2 21 21 O 1.21451 * 125.71049 * 0.02562 * 20 19 4 22 22 C 1.47817 * 108.58464 * 179.97438 * 20 19 4 23 23 C 1.38568 * 134.30409 * 179.97438 * 22 20 19 24 24 C 1.38607 * 119.72317 * 180.02562 * 23 22 20 25 25 C 1.38235 * 120.45591 * 0.02562 * 24 23 22 26 26 C 1.38603 * 120.46254 * 0.02562 * 25 24 23 27 27 C 1.38571 * 119.71830 * 359.97438 * 26 25 24 28 28 C 1.34534 * 124.45883 * 120.00525 * 19 4 2 29 29 O 1.21448 * 125.70556 * 359.97438 * 28 19 4 30 30 H 1.08999 * 109.47148 * 300.00069 * 1 2 3 31 31 H 1.08997 * 109.47045 * 60.00322 * 1 2 3 32 32 H 1.09005 * 109.46316 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47641 * 239.99937 * 2 1 3 34 34 H 1.08995 * 109.47121 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46697 * 300.00200 * 3 2 1 36 36 H 1.09002 * 109.46960 * 59.99519 * 3 2 1 37 37 H 1.09000 * 109.47255 * 299.99790 * 9 8 6 38 38 H 1.08994 * 109.47371 * 60.00468 * 9 8 6 39 39 H 1.09004 * 109.47190 * 299.99722 * 10 9 8 40 40 H 1.08997 * 109.47622 * 59.99865 * 10 9 8 41 41 H 0.97002 * 119.99658 * 179.97438 * 14 13 11 42 42 H 1.08001 * 120.13440 * 0.05519 * 23 22 20 43 43 H 1.07994 * 119.77235 * 180.27788 * 24 23 22 44 44 H 1.08001 * 119.76462 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.14506 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -0.2073 2.1392 6 6 1.5378 -2.1420 1.2493 7 8 2.3230 -3.0603 1.2493 8 8 0.2181 -2.3874 1.2493 9 6 -0.1934 -3.7798 1.2499 10 6 -1.7213 -3.8599 1.2492 11 6 -2.1486 -5.3051 1.2505 12 1 -1.4047 -6.0881 1.2513 13 6 -3.4891 -5.6277 1.2507 14 7 -4.3949 -4.6743 1.2492 15 14 -4.0186 -7.4191 1.2515 16 1 -2.8163 -8.2907 1.2525 17 1 -4.8303 -7.6947 2.4642 18 1 -4.8303 -7.6960 0.0392 19 7 3.5051 -0.7206 1.2495 20 6 4.2666 -1.2743 0.2889 21 8 3.8551 -1.8449 -0.7012 22 6 5.6883 -1.0712 0.6391 23 6 6.8907 -1.4151 0.0425 24 6 8.0853 -1.0634 0.6513 25 6 8.0847 -0.3729 1.8488 26 6 6.8897 -0.0231 2.4577 27 6 5.6878 -0.3681 1.8607 28 6 4.2659 -0.1658 2.2104 29 8 3.8534 0.4055 3.1995 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 0.1964 -4.2743 0.3602 38 1 0.1962 -4.2735 2.1401 39 1 -2.1115 -3.3653 2.1388 40 1 -2.1107 -3.3663 0.3588 41 1 -5.3379 -4.9013 1.2490 42 1 6.8971 -1.9545 -0.8931 43 1 9.0229 -1.3270 0.1848 44 1 9.0220 -0.1048 2.3136 45 1 6.8953 0.5167 3.3931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021838120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:28 Heat of formation + Delta-G solvation = -126.734598 kcal Electronic energy + Delta-G solvation = -30496.724519 eV Core-core repulsion = 26251.567747 eV Total energy + Delta-G solvation = -4245.156772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.76674 -41.68774 -39.88810 -39.57974 -37.98859 -37.65234 -36.39265 -35.47317 -32.65610 -32.41218 -32.14055 -29.43492 -28.10963 -27.06352 -26.30303 -24.73758 -23.45444 -23.32586 -22.55052 -21.71189 -20.85529 -19.46521 -18.78080 -18.64280 -18.29659 -17.85887 -17.82348 -17.38433 -17.04878 -16.53252 -16.46018 -15.81824 -15.47571 -15.45081 -15.28694 -15.05925 -14.97777 -14.84183 -14.42066 -14.16989 -13.89861 -13.74655 -13.32663 -13.25819 -13.15999 -13.10561 -12.81629 -12.71369 -12.63361 -12.50297 -12.20177 -12.09411 -11.98016 -11.74490 -11.62457 -11.51751 -11.46410 -11.37926 -11.03893 -10.64628 -10.23720 -10.22490 -8.30158 -6.43279 -1.05866 -0.03590 0.74478 0.85578 0.94489 1.37758 1.38949 1.44844 1.53449 1.86227 2.36492 2.51512 2.61381 3.04173 3.11529 3.24478 3.38124 3.52942 3.57132 3.82495 4.01950 4.05191 4.12366 4.16066 4.17229 4.17985 4.25057 4.37803 4.46174 4.60383 4.71368 4.77623 4.83172 4.88739 4.91575 5.02365 5.10080 5.17924 5.20550 5.25960 5.39275 5.40887 5.42252 5.46752 5.68555 5.69345 5.98731 6.02557 6.33179 6.48359 6.69414 7.26284 8.82468 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.002557 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.208723 B =10948.702375 C =11626.687465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.134 4.134 4 C 0.156 3.844 5 H 0.156 0.844 6 C 0.448 3.552 7 O -0.529 6.529 8 O -0.339 6.339 9 C 0.088 3.912 10 C 0.036 3.964 11 C -0.552 4.552 12 H 0.061 0.939 13 C 0.008 3.992 14 N -0.924 5.924 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.273 1.273 18 H -0.273 1.273 19 N -0.568 5.568 20 C 0.570 3.430 21 O -0.485 6.485 22 C -0.158 4.158 23 C -0.049 4.049 24 C -0.079 4.079 25 C -0.080 4.080 26 C -0.040 4.040 27 C -0.158 4.158 28 C 0.576 3.424 29 O -0.485 6.485 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.269 0.731 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.186 0.814 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.383 15.465 -0.898 32.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.115 4.115 3 C -0.191 4.191 4 C 0.053 3.947 5 H 0.173 0.827 6 C 0.291 3.709 7 O -0.418 6.418 8 O -0.255 6.255 9 C 0.014 3.986 10 C -0.001 4.001 11 C -0.589 4.589 12 H 0.079 0.921 13 C -0.191 4.191 14 N -0.562 5.562 15 Si 0.796 3.204 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.310 5.310 20 C 0.362 3.638 21 O -0.357 6.357 22 C -0.161 4.161 23 C -0.067 4.067 24 C -0.097 4.097 25 C -0.098 4.098 26 C -0.058 4.058 27 C -0.161 4.161 28 C 0.368 3.632 29 O -0.358 6.358 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.078 0.922 42 H 0.167 0.833 43 H 0.200 0.800 44 H 0.203 0.797 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 27.859 15.190 -0.898 31.743 hybrid contribution -1.178 -1.353 0.016 1.794 sum 26.681 13.836 -0.882 30.068 Atomic orbital electron populations 1.22023 0.91764 1.03515 1.03936 1.21434 0.98328 0.97802 0.93952 1.21770 1.00276 0.92740 1.04352 1.21121 0.77830 0.89815 1.05963 0.82676 1.24115 0.81731 0.92869 0.72228 1.90634 1.57487 1.47559 1.46127 1.86615 1.23824 1.32551 1.82484 1.23260 0.97681 0.76880 1.00732 1.18956 0.87272 0.96906 0.96986 1.21367 0.92748 0.92111 1.52707 0.92094 1.25928 0.96402 1.02742 0.94013 1.70088 1.01512 1.34431 1.50218 0.85292 0.78430 0.78522 0.78160 1.18909 1.19870 1.19881 1.46409 1.06861 1.53531 1.24243 1.18929 0.87910 0.75738 0.81254 1.90775 1.80018 1.37785 1.27141 1.20474 0.92801 1.04604 0.98262 1.21169 0.89532 0.95980 1.00034 1.21976 0.98257 0.94627 0.94795 1.22000 0.98644 0.94657 0.94480 1.21212 0.89037 0.95721 0.99845 1.20432 0.93016 1.04861 0.97816 1.18838 0.87702 0.76000 0.80671 1.90787 1.79898 1.39282 1.25865 0.90710 0.89869 0.92448 0.90915 0.93580 0.89550 0.90751 0.92647 0.92401 0.97169 0.97109 0.92244 0.83253 0.79997 0.79688 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 8.68 71.98 0.62 -3.53 16 2 C -0.10 -2.55 2.36 -10.79 -0.03 -2.57 16 3 C -0.13 -2.66 9.04 71.98 0.65 -2.01 16 4 C 0.16 4.80 2.30 44.24 0.10 4.90 16 5 H 0.16 4.29 7.58 -2.39 -0.02 4.27 16 6 C 0.45 17.67 6.91 71.24 0.49 18.17 16 7 O -0.53 -23.73 14.66 26.96 0.40 -23.33 16 8 O -0.34 -14.32 7.14 -51.45 -0.37 -14.69 16 9 C 0.09 4.16 5.40 71.98 0.39 4.55 16 10 C 0.04 1.97 5.35 29.85 0.16 2.13 16 11 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 13 C 0.01 0.49 5.46 84.66 0.46 0.95 16 14 N -0.92 -55.64 13.29 21.45 0.28 -55.36 16 15 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 16 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 N -0.57 -16.78 1.55 -744.38 -1.15 -17.93 16 20 C 0.57 17.31 6.68 86.82 0.58 17.89 16 21 O -0.49 -17.73 15.57 9.90 0.15 -17.58 16 22 C -0.16 -3.45 6.41 -20.00 -0.13 -3.58 16 23 C -0.05 -0.67 10.09 22.44 0.23 -0.44 16 24 C -0.08 -0.44 10.04 22.36 0.22 -0.21 16 25 C -0.08 -0.37 10.03 22.36 0.22 -0.14 16 26 C -0.04 -0.44 10.09 22.44 0.23 -0.21 16 27 C -0.16 -3.17 6.40 -20.00 -0.13 -3.29 16 28 C 0.58 15.36 8.02 86.81 0.70 16.06 16 29 O -0.49 -14.33 17.43 -3.55 -0.06 -14.39 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.96 5.32 -2.38 -0.01 1.94 16 33 H 0.07 2.22 6.83 -2.39 -0.02 2.20 16 34 H 0.05 0.93 7.60 -2.39 -0.02 0.91 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 38 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.18 -0.38 8.06 -2.91 -0.02 -0.41 16 44 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 45 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -79.31 383.62 7.30 -72.00 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.01 Total: 7.94 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.01 Total: 16.87 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -0.87 Total: -73.29 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: 0.12 Total: -69.99 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -79.31 7.30 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021838120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.730 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds