Wall clock time and date at job start Wed Apr 1 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47305 * 2 1 4 4 C 1.38753 * 119.66011 * 270.02315 * 3 2 1 5 5 C 1.36668 * 120.49321 * 179.97438 * 4 3 2 6 6 C 1.39832 * 119.71914 * 359.95411 * 5 4 3 7 7 C 1.46609 * 121.04866 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.91217 * 0.02562 * 7 6 5 9 9 N 1.46505 * 109.47094 * 81.68074 * 8 7 6 10 10 C 1.36943 * 119.99698 * 267.90749 * 9 8 7 11 11 H 1.07994 * 119.99789 * 321.85631 * 10 9 8 12 12 C 1.38811 * 119.99691 * 141.84695 * 10 9 8 13 13 N 1.31623 * 119.99584 * 157.64026 * 12 10 9 14 14 Si 1.86799 * 120.00520 * 337.64648 * 12 10 9 15 15 H 1.48502 * 109.47185 * 92.77912 * 14 12 10 16 16 H 1.48500 * 109.47177 * 212.77880 * 14 12 10 17 17 H 1.48499 * 109.47036 * 332.78079 * 14 12 10 18 18 C 1.46492 * 120.00292 * 87.90541 * 9 8 7 19 19 C 1.50704 * 109.47377 * 83.90200 * 18 9 8 20 20 O 1.20826 * 119.99226 * 359.97438 * 19 18 9 21 21 O 1.34220 * 120.00343 * 179.97438 * 19 18 9 22 22 C 1.45199 * 117.00024 * 179.97438 * 21 19 18 23 23 C 1.35713 * 118.17392 * 180.27553 * 7 6 5 24 24 C 1.41180 * 119.79792 * 359.54975 * 23 7 6 25 25 O 1.21775 * 119.15940 * 180.23286 * 24 23 7 26 26 O 1.34203 * 121.68128 * 0.44769 * 24 23 7 27 27 C 1.35000 * 121.46626 * 359.79221 * 26 24 23 28 28 C 1.37912 * 119.66319 * 89.99637 * 3 2 1 29 29 H 1.09000 * 109.47035 * 60.00254 * 1 2 3 30 30 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47032 * 300.00278 * 1 2 3 32 32 H 1.08997 * 109.47032 * 239.99722 * 2 1 3 33 33 H 1.09000 * 109.47035 * 119.99746 * 2 1 3 34 34 H 1.07998 * 119.75838 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.14089 * 180.02562 * 5 4 3 36 36 H 1.08991 * 109.47572 * 321.67469 * 8 7 6 37 37 H 1.09000 * 109.46956 * 201.67219 * 8 7 6 38 38 H 0.96998 * 120.00218 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47297 * 203.90035 * 18 9 8 40 40 H 1.09000 * 109.47383 * 323.90271 * 18 9 8 41 41 H 1.09007 * 109.47210 * 60.00318 * 22 21 19 42 42 H 1.09002 * 109.47463 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.47383 * 300.00503 * 22 21 19 44 44 H 1.08000 * 120.09934 * 179.72869 * 23 7 6 45 45 H 1.08001 * 120.09338 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2608 2.0683 -1.2057 5 6 2.7159 3.3569 -1.2256 6 6 2.9519 4.0274 -0.0214 7 6 3.4395 5.4099 -0.0087 8 6 3.7006 6.1506 -1.2949 9 7 2.4396 6.6843 -1.8158 10 6 1.7002 5.9498 -2.7041 11 1 2.1953 5.3674 -3.4670 12 6 0.3144 5.9538 -2.6238 13 7 -0.4068 5.6410 -3.6794 14 14 -0.5269 6.4033 -1.0177 15 1 -0.8290 7.8572 -1.0071 16 1 -1.7907 5.6342 -0.8888 17 1 0.3701 6.0758 0.1195 18 6 1.9696 8.0037 -1.3863 19 6 2.6271 9.0689 -2.2255 20 8 3.4085 8.7577 -3.0929 21 8 2.3447 10.3631 -2.0093 22 6 3.0153 11.3344 -2.8549 23 6 3.6541 6.0027 1.1931 24 6 3.3976 5.2883 2.3835 25 8 3.5902 5.8329 3.4555 26 8 2.9509 4.0229 2.3638 27 6 2.7218 3.3745 1.2021 28 6 2.2598 2.0643 1.1984 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0777 1.5503 -2.1355 35 1 2.8913 3.8555 -2.1673 36 1 4.1357 5.4684 -2.0252 37 1 4.3926 6.9716 -1.1073 38 1 -1.3752 5.6441 -3.6235 39 1 0.8879 8.0615 -1.5080 40 1 2.2260 8.1573 -0.3381 41 1 2.7568 11.1484 -3.8974 42 1 2.6990 12.3394 -2.5755 43 1 4.0941 11.2446 -2.7265 44 1 4.0174 7.0187 1.2387 45 1 2.0788 1.5514 2.1314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080872992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:30 Heat of formation + Delta-G solvation = -92.363435 kcal Electronic energy + Delta-G solvation = -31122.899530 eV Core-core repulsion = 26879.233203 eV Total energy + Delta-G solvation = -4243.666326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.52503 -39.81447 -38.86067 -37.17840 -36.94794 -35.71696 -34.46144 -33.03283 -31.85748 -30.48294 -29.11199 -28.74377 -27.31851 -26.31158 -24.43873 -23.67077 -22.98027 -21.78400 -21.19929 -20.23308 -18.51177 -17.94857 -17.45834 -17.10989 -16.91390 -16.40185 -16.19144 -15.76441 -15.18232 -15.09730 -14.79446 -14.64394 -14.48195 -13.79328 -13.67540 -13.51585 -13.34922 -13.28942 -13.02707 -12.93274 -12.75301 -12.55098 -12.38072 -11.97344 -11.77276 -11.62835 -11.45301 -11.38546 -11.17899 -11.01500 -10.86256 -10.79190 -10.50386 -10.34889 -10.06364 -9.96532 -9.89295 -9.77351 -8.92512 -8.48170 -8.00926 -7.43262 -6.42310 -3.84914 0.56058 1.38350 1.86786 2.75543 2.85869 3.02613 3.12699 3.23062 3.25706 3.29647 3.98865 4.14050 4.49027 4.60859 4.65681 4.71980 4.87425 4.93894 5.01420 5.28297 5.31209 5.32555 5.34602 5.39802 5.45686 5.51816 5.58390 5.66051 5.68333 5.77338 5.81939 5.82416 5.91812 5.94863 6.02693 6.17077 6.17929 6.24164 6.34128 6.42906 6.65901 6.75054 6.88929 6.93456 7.50439 7.54170 7.82688 7.92566 8.31774 8.51528 9.20595 9.53867 10.69550 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.004578 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.762539 B = 6114.833346 C = 7434.083209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.034 4.034 4 C -0.146 4.146 5 C -0.021 4.021 6 C -0.141 4.141 7 C 0.037 3.963 8 C 0.170 3.830 9 N -0.558 5.558 10 C -0.274 4.274 11 H 0.092 0.908 12 C 0.052 3.948 13 N -0.869 5.869 14 Si 0.855 3.145 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.260 1.260 18 C 0.136 3.864 19 C 0.432 3.568 20 O -0.494 6.494 21 O -0.374 6.374 22 C 0.035 3.965 23 C -0.290 4.290 24 C 0.513 3.487 25 O -0.490 6.490 26 O -0.279 6.279 27 C 0.142 3.858 28 C -0.149 4.149 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.271 0.729 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.153 0.847 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -4.315 3.879 7.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.034 4.034 4 C -0.164 4.164 5 C -0.039 4.039 6 C -0.142 4.142 7 C 0.032 3.968 8 C 0.045 3.955 9 N -0.276 5.276 10 C -0.401 4.401 11 H 0.109 0.891 12 C -0.153 4.153 13 N -0.505 5.505 14 Si 0.683 3.317 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.184 1.184 18 C 0.007 3.993 19 C 0.271 3.729 20 O -0.379 6.379 21 O -0.291 6.291 22 C -0.059 4.059 23 C -0.311 4.311 24 C 0.365 3.635 25 O -0.381 6.381 26 O -0.191 6.191 27 C 0.097 3.903 28 C -0.168 4.168 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.171 0.829 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.588 -4.265 4.123 7.500 hybrid contribution -0.738 0.674 0.615 1.173 sum 3.850 -3.592 4.738 7.083 Atomic orbital electron populations 1.21769 0.94380 1.01709 1.02826 1.20587 0.96456 0.92034 1.03070 1.19840 0.95426 0.96064 0.92111 1.20800 1.02488 0.95500 0.97580 1.21315 0.91778 0.92935 0.97838 1.19039 1.07428 0.94716 0.93015 1.22767 0.85583 0.90668 0.97827 1.20285 0.89175 0.96378 0.89651 1.43858 1.24066 1.10554 1.49103 1.18811 0.88017 1.26712 1.06602 0.89082 1.25498 0.96583 0.96844 0.96408 1.69838 1.06481 1.46671 1.27535 0.87256 0.80015 0.77945 0.86477 1.20327 1.21646 1.18434 1.21247 0.99758 0.82315 0.95959 1.26056 0.80308 0.82333 0.84173 1.90578 1.33422 1.82162 1.31712 1.86596 1.65828 1.17911 1.58764 1.23099 0.97251 0.90738 0.94828 1.22157 1.14620 1.03368 0.90987 1.19249 0.75297 0.78055 0.90898 1.90904 1.50797 1.62810 1.33591 1.83453 1.71960 1.29875 1.33783 1.19094 0.97095 0.91982 0.82128 1.20192 1.05836 0.91805 0.98967 0.91990 0.92338 0.92484 0.90470 0.90881 0.85179 0.82679 0.89823 0.91286 0.91853 0.87976 0.89628 0.92349 0.89026 0.92567 0.82920 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.08 -0.84 6.05 -27.88 -0.17 -1.01 16 3 C -0.03 -0.45 5.14 -104.55 -0.54 -0.99 16 4 C -0.15 -2.09 9.61 -39.96 -0.38 -2.47 16 5 C -0.02 -0.34 8.77 -39.55 -0.35 -0.69 16 6 C -0.14 -2.46 5.87 -105.04 -0.62 -3.08 16 7 C 0.04 0.64 5.66 -102.15 -0.58 0.06 16 8 C 0.17 2.94 5.34 -5.19 -0.03 2.92 16 9 N -0.56 -11.49 1.55 -175.99 -0.27 -11.76 16 10 C -0.27 -6.46 8.03 -15.06 -0.12 -6.58 16 11 H 0.09 2.29 7.53 -52.49 -0.40 1.90 16 12 C 0.05 1.30 5.26 -17.43 -0.09 1.20 16 13 N -0.87 -23.31 13.97 55.49 0.78 -22.53 16 14 Si 0.86 19.76 25.18 -169.99 -4.28 15.48 16 15 H -0.28 -6.17 6.57 56.52 0.37 -5.80 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.14 2.69 4.89 -5.20 -0.03 2.66 16 19 C 0.43 8.48 8.01 36.01 0.29 8.77 16 20 O -0.49 -10.75 16.13 -18.75 -0.30 -11.05 16 21 O -0.37 -6.47 10.56 -39.23 -0.41 -6.88 16 22 C 0.04 0.47 10.56 101.05 1.07 1.54 16 23 C -0.29 -5.03 9.59 -39.37 -0.38 -5.41 16 24 C 0.51 9.90 7.89 31.85 0.25 10.15 16 25 O -0.49 -10.45 17.91 -19.58 -0.35 -10.80 16 26 O -0.28 -5.21 9.82 -20.68 -0.20 -5.41 16 27 C 0.14 2.44 6.76 -38.45 -0.26 2.18 16 28 C -0.15 -2.17 9.64 -39.45 -0.38 -2.55 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.16 2.65 4.89 -52.49 -0.26 2.39 16 36 H 0.08 1.37 6.96 -51.93 -0.36 1.01 16 37 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.10 2.19 3.61 -51.93 -0.19 2.01 16 40 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 41 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 44 H 0.15 2.36 8.05 -52.49 -0.42 1.94 16 45 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -30.34 379.45 -7.12 -37.45 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.85 Total: 4.23 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.94 Total: 5.56 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.50 Total: -34.29 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.27 Total: -34.15 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.28 Total: 15.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.34 -7.12 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.909 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds