Wall clock time and date at job start Wed Apr 1 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47305 * 2 1 4 4 C 1.38753 * 119.66011 * 270.02315 * 3 2 1 5 5 C 1.36668 * 120.49321 * 179.97438 * 4 3 2 6 6 C 1.39832 * 119.71914 * 359.95411 * 5 4 3 7 7 C 1.46609 * 121.04866 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.91217 * 0.02562 * 7 6 5 9 9 N 1.46505 * 109.47094 * 81.68074 * 8 7 6 10 10 C 1.36943 * 119.99698 * 267.90749 * 9 8 7 11 11 H 1.07994 * 119.99789 * 321.85631 * 10 9 8 12 12 C 1.38811 * 119.99691 * 141.84695 * 10 9 8 13 13 N 1.31623 * 119.99584 * 157.64026 * 12 10 9 14 14 Si 1.86799 * 120.00520 * 337.64648 * 12 10 9 15 15 H 1.48502 * 109.47185 * 92.77912 * 14 12 10 16 16 H 1.48500 * 109.47177 * 212.77880 * 14 12 10 17 17 H 1.48499 * 109.47036 * 332.78079 * 14 12 10 18 18 C 1.46492 * 120.00292 * 87.90541 * 9 8 7 19 19 C 1.50704 * 109.47377 * 83.90200 * 18 9 8 20 20 O 1.20826 * 119.99226 * 359.97438 * 19 18 9 21 21 O 1.34220 * 120.00343 * 179.97438 * 19 18 9 22 22 C 1.45199 * 117.00024 * 179.97438 * 21 19 18 23 23 C 1.35713 * 118.17392 * 180.27553 * 7 6 5 24 24 C 1.41180 * 119.79792 * 359.54975 * 23 7 6 25 25 O 1.21775 * 119.15940 * 180.23286 * 24 23 7 26 26 O 1.34203 * 121.68128 * 0.44769 * 24 23 7 27 27 C 1.35000 * 121.46626 * 359.79221 * 26 24 23 28 28 C 1.37912 * 119.66319 * 89.99637 * 3 2 1 29 29 H 1.09000 * 109.47035 * 60.00254 * 1 2 3 30 30 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47032 * 300.00278 * 1 2 3 32 32 H 1.08997 * 109.47032 * 239.99722 * 2 1 3 33 33 H 1.09000 * 109.47035 * 119.99746 * 2 1 3 34 34 H 1.07998 * 119.75838 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.14089 * 180.02562 * 5 4 3 36 36 H 1.08991 * 109.47572 * 321.67469 * 8 7 6 37 37 H 1.09000 * 109.46956 * 201.67219 * 8 7 6 38 38 H 0.96998 * 120.00218 * 180.02562 * 13 12 10 39 39 H 1.09004 * 109.47297 * 203.90035 * 18 9 8 40 40 H 1.09000 * 109.47383 * 323.90271 * 18 9 8 41 41 H 1.09007 * 109.47210 * 60.00318 * 22 21 19 42 42 H 1.09002 * 109.47463 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.47383 * 300.00503 * 22 21 19 44 44 H 1.08000 * 120.09934 * 179.72869 * 23 7 6 45 45 H 1.08001 * 120.09338 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2608 2.0683 -1.2057 5 6 2.7159 3.3569 -1.2256 6 6 2.9519 4.0274 -0.0214 7 6 3.4395 5.4099 -0.0087 8 6 3.7006 6.1506 -1.2949 9 7 2.4396 6.6843 -1.8158 10 6 1.7002 5.9498 -2.7041 11 1 2.1953 5.3674 -3.4670 12 6 0.3144 5.9538 -2.6238 13 7 -0.4068 5.6410 -3.6794 14 14 -0.5269 6.4033 -1.0177 15 1 -0.8290 7.8572 -1.0071 16 1 -1.7907 5.6342 -0.8888 17 1 0.3701 6.0758 0.1195 18 6 1.9696 8.0037 -1.3863 19 6 2.6271 9.0689 -2.2255 20 8 3.4085 8.7577 -3.0929 21 8 2.3447 10.3631 -2.0093 22 6 3.0153 11.3344 -2.8549 23 6 3.6541 6.0027 1.1931 24 6 3.3976 5.2883 2.3835 25 8 3.5902 5.8329 3.4555 26 8 2.9509 4.0229 2.3638 27 6 2.7218 3.3745 1.2021 28 6 2.2598 2.0643 1.1984 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0777 1.5503 -2.1355 35 1 2.8913 3.8555 -2.1673 36 1 4.1357 5.4684 -2.0252 37 1 4.3926 6.9716 -1.1073 38 1 -1.3752 5.6441 -3.6235 39 1 0.8879 8.0615 -1.5080 40 1 2.2260 8.1573 -0.3381 41 1 2.7568 11.1484 -3.8974 42 1 2.6990 12.3394 -2.5755 43 1 4.0941 11.2446 -2.7265 44 1 4.0174 7.0187 1.2387 45 1 2.0788 1.5514 2.1314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080872992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:29 Heat of formation + Delta-G solvation = -106.940458 kcal Electronic energy + Delta-G solvation = -31123.531637 eV Core-core repulsion = 26879.233203 eV Total energy + Delta-G solvation = -4244.298433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.92104 -41.30510 -40.16543 -38.67614 -38.36146 -37.17385 -35.89943 -34.25701 -33.54572 -31.72517 -30.55303 -29.90046 -28.74448 -27.75545 -25.59820 -25.08985 -24.41340 -22.87849 -22.63514 -21.75452 -19.75474 -19.38899 -19.03147 -18.64315 -18.32834 -17.86933 -17.68881 -17.21036 -16.82022 -16.41149 -16.03330 -15.90015 -15.86416 -15.20747 -14.98312 -14.77304 -14.70727 -14.49438 -14.42934 -14.32953 -14.16272 -14.01735 -13.60439 -13.40769 -13.05809 -12.92046 -12.85643 -12.63509 -12.54045 -12.31551 -12.21355 -12.04723 -11.87165 -11.74505 -11.69194 -11.54517 -11.31279 -11.22278 -10.72964 -9.73431 -9.30628 -9.12656 -8.31629 -5.73314 -0.76234 0.08564 0.58002 1.19214 1.28948 1.37323 1.40019 1.42974 1.74336 1.88845 2.27743 2.69927 2.94789 3.11834 3.22841 3.35928 3.49481 3.81053 3.96421 4.06002 4.10027 4.17305 4.22399 4.29433 4.35877 4.36804 4.38378 4.41941 4.50767 4.56036 4.69785 4.70591 4.74237 4.83107 4.94172 5.04776 5.07132 5.09578 5.19581 5.41107 5.44235 5.46411 5.56056 5.72766 5.75854 6.09737 6.11171 6.37853 6.61845 6.94685 7.38949 7.76901 8.84835 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.004578 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.762539 B = 6114.833346 C = 7434.083209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C -0.022 4.022 4 C -0.145 4.145 5 C -0.032 4.032 6 C -0.162 4.162 7 C 0.044 3.956 8 C 0.174 3.826 9 N -0.570 5.570 10 C -0.251 4.251 11 H 0.067 0.933 12 C 0.014 3.986 13 N -0.918 5.918 14 Si 0.897 3.103 15 H -0.266 1.266 16 H -0.305 1.305 17 H -0.262 1.262 18 C 0.130 3.870 19 C 0.437 3.563 20 O -0.521 6.521 21 O -0.376 6.376 22 C 0.028 3.972 23 C -0.285 4.285 24 C 0.509 3.491 25 O -0.518 6.518 26 O -0.285 6.285 27 C 0.120 3.880 28 C -0.148 4.148 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.267 0.733 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.051 0.949 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.174 0.826 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -4.884 5.023 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.023 4.023 4 C -0.163 4.163 5 C -0.050 4.050 6 C -0.163 4.163 7 C 0.039 3.961 8 C 0.049 3.951 9 N -0.289 5.289 10 C -0.380 4.380 11 H 0.085 0.915 12 C -0.186 4.186 13 N -0.559 5.559 14 Si 0.725 3.275 15 H -0.193 1.193 16 H -0.233 1.233 17 H -0.186 1.186 18 C 0.002 3.998 19 C 0.278 3.722 20 O -0.408 6.408 21 O -0.292 6.292 22 C -0.065 4.065 23 C -0.306 4.306 24 C 0.362 3.638 25 O -0.411 6.411 26 O -0.197 6.197 27 C 0.076 3.924 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.191 0.809 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.298 -4.819 5.298 8.909 hybrid contribution -0.797 0.776 0.286 1.149 sum 4.501 -4.043 5.584 8.233 Atomic orbital electron populations 1.21779 0.94386 1.02911 1.01672 1.20701 0.96192 0.89812 1.05147 1.20251 0.93410 0.97559 0.91030 1.21116 1.01266 0.94866 0.99090 1.21291 0.92722 0.93968 0.97060 1.19181 1.08554 0.95019 0.93555 1.22793 0.84639 0.90981 0.97673 1.20319 0.87942 0.97135 0.89682 1.43826 1.24325 1.11105 1.49625 1.18594 0.87838 1.25321 1.06230 0.91501 1.25798 0.97170 0.97913 0.97710 1.69925 1.06330 1.50693 1.28963 0.86593 0.78555 0.78007 0.84313 1.19312 1.23292 1.18599 1.21279 0.98852 0.82188 0.97488 1.25820 0.79684 0.83233 0.83460 1.90567 1.34757 1.82779 1.32746 1.86552 1.65970 1.17348 1.59328 1.23461 0.97680 0.91342 0.94035 1.22320 1.14086 1.04018 0.90138 1.19501 0.74934 0.78254 0.91063 1.90885 1.52189 1.63561 1.34435 1.83411 1.71829 1.29710 1.34702 1.19445 0.98439 0.92986 0.81520 1.20574 1.04640 0.90841 1.00520 0.93585 0.90035 0.93230 0.88628 0.88676 0.83346 0.83877 0.89271 0.89338 0.92318 0.89577 0.86908 0.93049 0.85122 0.91797 0.80899 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.08 -1.33 6.05 29.85 0.18 -1.15 16 3 C -0.02 -0.53 5.14 -19.82 -0.10 -0.64 16 4 C -0.15 -3.96 9.61 22.03 0.21 -3.75 16 5 C -0.03 -1.05 8.77 22.29 0.20 -0.86 16 6 C -0.16 -5.55 5.87 -20.14 -0.12 -5.67 16 7 C 0.04 1.47 5.66 -18.26 -0.10 1.36 16 8 C 0.17 5.83 5.34 85.63 0.46 6.29 16 9 N -0.57 -23.19 1.55 -710.69 -1.10 -24.30 16 10 C -0.25 -12.02 8.03 84.03 0.67 -11.34 16 11 H 0.07 3.49 7.53 -2.91 -0.02 3.47 16 12 C 0.01 0.73 5.26 84.86 0.45 1.17 16 13 N -0.92 -50.91 13.97 21.65 0.30 -50.60 16 14 Si 0.90 41.21 25.18 68.60 1.73 42.94 16 15 H -0.27 -11.63 6.57 99.48 0.65 -10.98 16 16 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.13 5.01 4.89 85.64 0.42 5.42 16 19 C 0.44 16.67 8.01 71.24 0.57 17.24 16 20 O -0.52 -22.31 16.13 21.96 0.35 -21.96 16 21 O -0.38 -12.29 10.56 -51.32 -0.54 -12.83 16 22 C 0.03 0.69 10.56 113.37 1.20 1.89 16 23 C -0.28 -9.47 9.59 22.41 0.21 -9.25 16 24 C 0.51 19.17 7.89 68.54 0.54 19.71 16 25 O -0.52 -21.72 17.91 19.03 0.34 -21.38 16 26 O -0.28 -10.38 9.82 15.12 0.15 -10.23 16 27 C 0.12 4.00 6.76 23.00 0.16 4.15 16 28 C -0.15 -3.97 9.64 22.36 0.22 -3.75 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.14 4.97 4.89 -2.91 -0.01 4.96 16 36 H 0.09 2.90 6.96 -2.39 -0.02 2.88 16 37 H 0.09 2.63 7.99 -2.39 -0.02 2.61 16 38 H 0.27 14.26 8.31 -92.71 -0.77 13.48 16 39 H 0.09 3.64 3.61 -2.38 -0.01 3.63 16 40 H 0.11 3.67 8.12 -2.39 -0.02 3.65 16 41 H 0.05 1.34 8.13 -2.38 -0.02 1.32 16 42 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.47 8.13 -2.38 -0.02 1.46 16 44 H 0.17 4.94 8.05 -2.91 -0.02 4.91 16 45 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -66.88 379.45 8.07 -58.81 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.97 Total: 20.63 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.87 Total: 18.92 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -0.80 Total: -74.90 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: 0.30 Total: -66.39 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.73 Total: 42.94 kcal Total: -66.88 8.07 -58.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.129 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds