Wall clock time and date at job start Wed Apr 1 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20831 * 119.99483 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00258 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47477 * 180.02562 * 5 3 2 7 7 C 1.37103 * 120.00029 * 270.00164 * 6 5 3 8 8 H 1.07998 * 119.99809 * 202.99307 * 7 6 5 9 9 C 1.38948 * 119.99877 * 22.99063 * 7 6 5 10 10 N 1.31412 * 119.99791 * 351.26242 * 9 7 6 11 11 Si 1.86800 * 119.99959 * 171.26070 * 9 7 6 12 12 H 1.48497 * 109.46878 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47093 * 120.00193 * 11 9 7 14 14 H 1.48509 * 109.46928 * 240.00324 * 11 9 7 15 15 C 1.34779 * 120.00458 * 89.99209 * 6 5 3 16 16 O 1.21294 * 119.99354 * 5.02525 * 15 6 5 17 17 C 1.50696 * 120.00256 * 185.01841 * 15 6 5 18 18 C 1.50700 * 109.46896 * 174.84100 * 17 15 6 19 19 C 1.34000 * 126.90785 * 264.97363 * 18 17 15 20 20 O 1.34448 * 110.15938 * 180.02562 * 19 18 17 21 21 C 1.34808 * 110.88572 * 0.02562 * 20 19 18 22 22 C 1.38943 * 133.49298 * 179.97438 * 21 20 19 23 23 C 1.37852 * 119.81606 * 180.02562 * 22 21 20 24 24 C 1.50704 * 119.65487 * 179.97438 * 23 22 21 25 25 C 1.38742 * 120.68790 * 359.96783 * 23 22 21 26 26 C 1.50701 * 119.79400 * 179.97438 * 25 23 22 27 27 C 1.36742 * 120.41449 * 0.02562 * 25 23 22 28 28 C 1.39406 * 119.71945 * 359.97438 * 27 25 23 29 29 H 1.08996 * 109.46838 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47097 * 299.99383 * 1 2 3 31 31 H 1.08996 * 109.47120 * 59.99569 * 1 2 3 32 32 H 1.08994 * 109.47329 * 59.99988 * 5 3 2 33 33 H 1.09008 * 109.46850 * 299.99991 * 5 3 2 34 34 H 0.97008 * 119.99426 * 185.00417 * 10 9 7 35 35 H 1.09000 * 109.46992 * 54.84275 * 17 15 6 36 36 H 1.08999 * 109.47436 * 294.84183 * 17 15 6 37 37 H 1.08002 * 124.91946 * 0.02644 * 19 18 17 38 38 H 1.08000 * 120.09510 * 0.02562 * 22 21 20 39 39 H 1.09000 * 109.47102 * 269.98226 * 24 23 22 40 40 H 1.08999 * 109.47206 * 29.99154 * 24 23 22 41 41 H 1.08998 * 109.46731 * 149.98429 * 24 23 22 42 42 H 1.09003 * 109.46815 * 270.02462 * 26 25 23 43 43 H 1.09001 * 109.46649 * 30.02000 * 26 25 23 44 44 H 1.08990 * 109.46919 * 150.02510 * 26 25 23 45 45 H 1.08003 * 120.13715 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1755 3.3380 -1.1868 8 1 4.8138 4.2083 -1.2237 9 6 3.5508 2.8851 -2.3424 10 7 2.9157 1.7346 -2.3382 11 14 3.6135 3.9117 -3.9017 12 1 4.3837 5.1552 -3.6450 13 1 4.2739 3.1336 -4.9804 14 1 2.2322 4.2629 -4.3191 15 6 4.1731 3.3254 1.1677 16 8 4.0907 2.7204 2.2157 17 6 4.4897 4.7987 1.1709 18 6 4.5309 5.3005 2.5913 19 6 3.5305 5.8788 3.2698 20 8 3.9355 6.1957 4.5120 21 6 5.2215 5.8395 4.7038 22 6 6.0919 5.9431 5.7818 23 6 7.3833 5.4743 5.6675 24 6 8.3245 5.5891 6.8389 25 6 7.8253 4.8979 4.4855 26 6 9.2414 4.3927 4.3826 27 6 6.9845 4.7863 3.4129 28 6 5.6751 5.2546 3.5096 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.9557 0.7811 -0.8908 33 1 3.9564 0.7806 0.8892 34 1 2.5420 1.3840 -3.1619 35 1 3.7201 5.3369 0.6176 36 1 5.4585 4.9633 0.6992 37 1 2.5420 6.0636 2.8758 38 1 5.7578 6.3896 6.7066 39 1 8.8568 6.5388 6.7856 40 1 7.7561 5.5427 7.7677 41 1 9.0416 4.7687 6.8104 42 1 9.8875 5.1933 4.0223 43 1 9.5823 4.0647 5.3645 44 1 9.2785 3.5548 3.6864 45 1 7.3332 4.3364 2.4951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120729730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:37 Heat of formation + Delta-G solvation = -83.486946 kcal Electronic energy + Delta-G solvation = -30476.056688 eV Core-core repulsion = 26232.775275 eV Total energy + Delta-G solvation = -4243.281413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11565 -39.43334 -38.46173 -38.26964 -35.50486 -34.57901 -33.62594 -32.08224 -31.63096 -31.49911 -29.01611 -27.52711 -26.79945 -26.19411 -25.97591 -24.47632 -22.31939 -20.84288 -20.66976 -19.71268 -19.12377 -17.34344 -16.66102 -16.58446 -16.43616 -16.12952 -15.66756 -15.46212 -15.17135 -15.01035 -14.34937 -14.27844 -14.11119 -14.04874 -14.02663 -13.65695 -12.85484 -12.81238 -12.71895 -12.46209 -12.38391 -12.23233 -12.02643 -11.93764 -11.51756 -11.40090 -11.30664 -11.25005 -11.23336 -11.01851 -10.85784 -10.60459 -10.51107 -10.43196 -9.82405 -9.58135 -9.53421 -9.02915 -8.61824 -8.14277 -7.97472 -7.71628 -6.47974 -4.11151 1.17678 1.57044 2.69181 3.04771 3.11864 3.15706 3.18875 3.49793 3.72649 3.87456 3.99633 4.07947 4.72172 4.74332 4.84924 4.92546 4.98769 5.08888 5.20578 5.30529 5.45813 5.50860 5.61984 5.65933 5.70171 5.76085 5.77578 5.77801 5.81496 5.95112 5.99119 6.08561 6.13948 6.25112 6.26513 6.31410 6.49118 6.54441 6.57738 6.74058 6.78828 6.91043 6.92835 7.28152 7.48264 7.49548 7.62384 8.21747 8.94653 9.13038 9.33889 9.74211 10.53561 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.003186 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.622271 B = 8787.233883 C = 9478.175718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.491 3.509 4 O -0.516 6.516 5 C 0.155 3.845 6 N -0.436 5.436 7 C -0.327 4.327 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.884 5.884 11 Si 0.932 3.068 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.475 3.525 16 O -0.592 6.592 17 C -0.053 4.053 18 C -0.135 4.135 19 C 0.001 3.999 20 O -0.197 6.197 21 C 0.048 3.952 22 C -0.110 4.110 23 C -0.069 4.069 24 C -0.111 4.111 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.058 4.058 28 C -0.107 4.107 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.273 0.727 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.205 0.795 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 4.393 8.630 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.402 6.402 5 C 0.029 3.971 6 N -0.155 5.155 7 C -0.454 4.454 8 H 0.121 0.879 9 C -0.161 4.161 10 N -0.524 5.524 11 Si 0.758 3.242 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.264 3.736 16 O -0.477 6.477 17 C -0.093 4.093 18 C -0.137 4.137 19 C -0.064 4.064 20 O -0.099 6.099 21 C 0.001 3.999 22 C -0.128 4.128 23 C -0.069 4.069 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.167 4.167 27 C -0.076 4.076 28 C -0.108 4.108 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.222 0.778 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.211 4.435 9.202 11.955 hybrid contribution -0.645 0.368 -1.375 1.563 sum 5.566 4.803 7.827 10.739 Atomic orbital electron populations 1.22914 0.78976 1.01757 1.01448 1.86468 1.21419 1.35546 1.85611 1.23998 0.92383 0.80384 0.69894 1.90489 1.66744 1.36495 1.46474 1.20625 0.86853 0.85651 1.03937 1.43332 1.58498 1.08420 1.05277 1.19713 1.27574 1.12997 0.85118 0.87920 1.25293 0.94259 0.96295 1.00215 1.69618 1.36425 1.17887 1.28476 0.85789 0.78171 0.79705 0.80499 1.19201 1.20657 1.20603 1.20102 0.81598 0.88531 0.83386 1.90570 1.57102 1.68395 1.31600 1.19796 1.03957 0.94701 0.90798 1.20740 0.92508 1.03379 0.97070 1.23655 0.99522 1.01586 0.81589 1.83953 1.25062 1.68983 1.31918 1.19537 0.83531 1.00563 0.96284 1.19603 0.91676 1.05101 0.96462 1.19367 0.93398 0.98717 0.95446 1.20816 0.98270 1.02428 0.95263 1.19272 0.96677 1.01680 0.93339 1.20796 0.92413 1.00944 1.02576 1.20130 0.91150 0.97733 0.98557 1.19738 0.95013 1.02262 0.93782 0.89637 0.93265 0.92805 0.84456 0.90633 0.91625 0.88232 0.89069 0.77845 0.85563 0.91172 0.91658 0.90935 0.91459 0.91338 0.91557 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.20 10.57 -39.26 -0.41 -8.61 16 3 C 0.49 12.26 5.92 36.00 0.21 12.47 16 4 O -0.52 -14.20 15.94 -18.75 -0.30 -14.50 16 5 C 0.15 3.75 5.29 -5.20 -0.03 3.72 16 6 N -0.44 -10.75 2.11 -116.10 -0.25 -11.00 16 7 C -0.33 -7.90 9.00 -14.93 -0.13 -8.04 16 8 H 0.10 2.29 6.72 -52.49 -0.35 1.94 16 9 C 0.04 1.03 5.41 -17.47 -0.09 0.94 16 10 N -0.88 -22.23 8.21 55.50 0.46 -21.78 16 11 Si 0.93 19.15 29.57 -169.99 -5.03 14.12 16 12 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 15 C 0.47 11.37 7.61 -10.99 -0.08 11.29 16 16 O -0.59 -15.68 15.60 5.54 0.09 -15.59 16 17 C -0.05 -1.04 4.80 -29.04 -0.14 -1.18 16 18 C -0.14 -2.57 4.85 -102.66 -0.50 -3.07 16 19 C 0.00 0.01 11.89 29.24 0.35 0.36 16 20 O -0.20 -3.47 10.58 3.91 0.04 -3.42 16 21 C 0.05 0.84 7.42 -38.47 -0.29 0.55 16 22 C -0.11 -1.58 9.70 -39.46 -0.38 -1.96 16 23 C -0.07 -0.90 5.88 -104.57 -0.61 -1.51 16 24 C -0.11 -1.00 9.58 36.01 0.34 -0.65 16 25 C -0.11 -1.51 5.85 -104.98 -0.61 -2.13 16 26 C -0.11 -1.15 9.58 36.01 0.34 -0.80 16 27 C -0.06 -0.95 9.68 -39.69 -0.38 -1.33 16 28 C -0.11 -1.97 6.38 -105.16 -0.67 -2.64 16 29 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.14 3.33 6.28 -51.93 -0.33 3.01 16 33 H 0.08 1.77 7.36 -51.92 -0.38 1.39 16 34 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 35 H 0.10 1.88 8.03 -51.93 -0.42 1.46 16 36 H 0.09 1.64 7.74 -51.93 -0.40 1.24 16 37 H 0.20 2.89 8.06 -52.49 -0.42 2.47 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.07 0.57 5.90 -51.93 -0.31 0.27 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 5.91 -51.93 -0.31 0.29 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.27 16 45 H 0.12 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 380.57 15.07 5.74 5.74 Total: -1.00 -32.50 380.57 -7.13 -39.63 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.85 Total: 7.56 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -1.61 Total: 7.85 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.21 Total: -32.77 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -0.59 Total: -42.13 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.50 -7.13 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120729730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.856 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds