Wall clock time and date at job start Wed Apr 1 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86788 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47605 * 270.00207 * 3 2 1 5 5 H 1.48507 * 109.47238 * 30.00108 * 3 2 1 6 6 H 1.48501 * 109.47101 * 150.00022 * 3 2 1 7 7 C 1.38815 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99396 * 163.08335 * 7 2 1 9 9 N 1.36933 * 120.00647 * 343.07600 * 7 2 1 10 10 C 1.46924 * 120.62883 * 331.83891 * 9 7 2 11 11 C 1.53191 * 108.77517 * 233.57942 * 10 9 7 12 12 C 1.53039 * 109.31532 * 305.36816 * 11 10 9 13 13 O 1.45204 * 109.45923 * 181.38173 * 12 11 10 14 14 C 1.34226 * 116.99617 * 149.97089 * 13 12 11 15 15 O 1.20819 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99697 * 180.02562 * 14 13 12 17 17 H 1.09007 * 109.50085 * 305.06425 * 16 14 13 18 18 C 1.52901 * 109.50244 * 65.17024 * 16 14 13 19 19 C 1.50588 * 110.32495 * 169.83046 * 18 16 14 20 20 C 1.38093 * 119.91251 * 158.81090 * 19 18 16 21 21 C 1.38325 * 120.13637 * 179.55178 * 20 19 18 22 22 C 1.38387 * 120.47063 * 0.02562 * 21 20 19 23 23 C 1.38026 * 120.04718 * 0.34374 * 22 21 20 24 24 C 1.39401 * 119.65121 * 359.48489 * 23 22 21 25 25 C 1.48129 * 120.39104 * 179.86995 * 24 23 22 26 26 O 1.21471 * 121.44407 * 350.54283 * 25 24 23 27 27 O 1.35747 * 117.11203 * 170.55987 * 25 24 23 28 28 C 1.53042 * 109.52534 * 61.37007 * 12 11 10 29 29 C 1.46928 * 120.63028 * 151.81226 * 9 7 2 30 30 H 0.96998 * 119.99808 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58937 * 113.79534 * 10 9 7 32 32 H 1.09000 * 109.58692 * 353.37320 * 10 9 7 33 33 H 1.08998 * 109.49644 * 185.41052 * 11 10 9 34 34 H 1.09010 * 109.49415 * 65.32231 * 11 10 9 35 35 H 1.09000 * 109.45525 * 301.35645 * 12 11 10 36 36 H 1.09002 * 109.32896 * 49.56620 * 18 16 14 37 37 H 1.08999 * 109.33133 * 290.09313 * 18 16 14 38 38 H 1.07990 * 119.93244 * 359.57166 * 20 19 18 39 39 H 1.08003 * 119.76460 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.97745 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.17716 * 179.70080 * 23 22 21 42 42 H 1.09002 * 109.49648 * 58.58036 * 28 12 11 43 43 H 1.09004 * 109.49173 * 178.67828 * 28 12 11 44 44 H 1.09004 * 109.58574 * 246.20297 * 29 9 7 45 45 H 1.08993 * 109.58667 * 6.48396 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2727 9 7 1.3700 -2.3626 0.3441 10 6 0.2261 -2.3411 1.2659 11 6 0.4975 -3.3213 2.4114 12 6 0.8118 -4.7025 1.8320 13 8 1.0375 -5.6419 2.9160 14 6 0.7177 -6.9252 2.6865 15 8 0.2648 -7.2528 1.6154 16 6 0.9237 -7.9573 3.7650 17 1 1.9605 -7.9312 4.1005 18 6 -0.0026 -7.6560 4.9436 19 6 0.0034 -8.8024 5.9200 20 6 -0.3868 -8.5947 7.2283 21 6 -0.3920 -9.6464 8.1268 22 6 -0.0070 -10.9138 7.7258 23 6 0.3927 -11.1350 6.4234 24 6 0.3958 -10.0784 5.5141 25 6 0.8245 -10.2967 4.1131 26 8 1.3392 -11.3398 3.7631 27 8 0.6175 -9.2804 3.2373 28 6 2.0673 -4.6180 0.9609 29 6 1.8136 -3.6528 -0.2013 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6771 -2.6410 0.7346 32 1 0.0994 -1.3357 1.6675 33 1 -0.3831 -3.3867 3.0506 34 1 1.3473 -2.9704 2.9970 35 1 -0.0284 -5.0419 1.2262 36 1 -1.0166 -7.5011 4.5751 37 1 0.3374 -6.7512 5.4475 38 1 -0.6888 -7.6092 7.5506 39 1 -0.6979 -9.4772 9.1486 40 1 -0.0145 -11.7293 8.4339 41 1 0.6982 -12.1221 6.1095 42 1 2.9022 -4.2547 1.5602 43 1 2.3042 -5.6066 0.5674 44 1 1.0399 -4.0597 -0.8523 45 1 2.7329 -3.5124 -0.7699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120949717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:40 Heat of formation + Delta-G solvation = -129.967488 kcal Electronic energy + Delta-G solvation = -29764.895433 eV Core-core repulsion = 25519.598473 eV Total energy + Delta-G solvation = -4245.296960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.46838 -41.54788 -39.56155 -39.31241 -38.48121 -37.37359 -34.75310 -34.31586 -32.29444 -32.21753 -31.59267 -31.02535 -27.32881 -26.37480 -25.48070 -24.26993 -23.88024 -22.94163 -22.39399 -21.16436 -20.93629 -19.48406 -19.10996 -18.80073 -18.06849 -17.94770 -17.37011 -16.85939 -16.69309 -16.30795 -16.25245 -15.69954 -15.46004 -15.41165 -15.13720 -14.96590 -14.87179 -14.65821 -14.32114 -14.23700 -14.07136 -13.58226 -13.30331 -13.07100 -13.05124 -12.85888 -12.76457 -12.60597 -12.49781 -12.29488 -12.19454 -12.13711 -11.99186 -11.87392 -11.73671 -11.46669 -11.22135 -11.09591 -10.56001 -10.12151 -9.83931 -8.75534 -7.90440 -5.36129 -0.55046 0.27675 0.69417 0.88210 1.25282 1.49124 1.50627 1.60476 2.05738 2.51310 2.62774 2.90447 3.11341 3.19837 3.27792 3.56154 3.60408 3.65405 3.76955 3.80846 3.82732 4.13270 4.15482 4.30263 4.35517 4.38254 4.44727 4.55757 4.57087 4.72497 4.76162 4.80432 4.86293 4.94907 4.96295 5.04511 5.16967 5.20083 5.29041 5.33364 5.42813 5.43384 5.58695 5.63044 5.68893 5.84422 6.08569 6.36671 6.49251 7.11801 7.79764 8.32470 9.17341 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023994 B = 0.002139 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.690077 B =13090.021098 C =13850.143544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.118 4.118 12 C 0.106 3.894 13 O -0.333 6.333 14 C 0.468 3.532 15 O -0.518 6.518 16 C 0.115 3.885 17 H 0.147 0.853 18 C -0.106 4.106 19 C -0.038 4.038 20 C -0.120 4.120 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.060 4.060 24 C -0.199 4.199 25 C 0.532 3.468 26 O -0.481 6.481 27 O -0.367 6.367 28 C -0.136 4.136 29 C 0.145 3.855 30 H 0.252 0.748 31 H 0.000 1.000 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -18.306 22.467 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.157 4.157 12 C 0.052 3.948 13 O -0.250 6.250 14 C 0.310 3.690 15 O -0.406 6.406 16 C 0.060 3.940 17 H 0.164 0.836 18 C -0.142 4.142 19 C -0.039 4.039 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.148 4.148 23 C -0.078 4.078 24 C -0.200 4.200 25 C 0.377 3.623 26 O -0.365 6.365 27 O -0.287 6.287 28 C -0.175 4.175 29 C 0.019 3.981 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.152 0.848 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.703 -18.735 21.737 28.705 hybrid contribution 0.125 0.706 -1.106 1.318 sum -0.578 -18.030 20.630 27.404 Atomic orbital electron populations 1.70164 1.06656 1.26118 1.55099 1.25826 0.96079 1.01569 1.00900 0.85254 0.78160 0.79376 0.77488 1.21429 1.21647 1.19362 1.19497 0.92940 0.85694 1.41406 0.91372 1.44393 1.35991 1.02294 1.50702 1.20639 0.87869 0.97814 0.88497 1.22188 1.02764 0.91440 0.99346 1.22761 0.98493 0.87231 0.86317 1.86502 1.76853 1.16799 1.44804 1.23148 0.74366 0.83672 0.87815 1.90727 1.41259 1.81149 1.27478 1.22282 1.04377 0.77159 0.90221 0.83561 1.21170 1.01360 0.99564 0.92116 1.19898 0.96306 0.91872 0.95782 1.21403 0.99626 1.01848 0.90910 1.21913 0.93711 0.91752 1.01268 1.21576 0.99077 0.99057 0.95098 1.21409 0.94937 0.98064 0.93378 1.19942 1.10598 0.96823 0.92675 1.21438 0.73400 0.82105 0.85380 1.90789 1.37673 1.27480 1.80593 1.86953 1.82048 1.16335 1.43394 1.22309 0.97540 0.99730 0.97955 1.20948 0.97984 0.85735 0.93386 0.93870 0.98200 0.91083 0.89583 0.90740 0.91499 0.87631 0.83052 0.81747 0.81651 0.82277 0.84800 0.90445 0.91494 0.97021 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.82 11.20 21.65 0.24 -53.58 16 2 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 3 Si 0.97 43.59 29.59 68.60 2.03 45.61 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.27 -14.26 9.58 84.03 0.81 -13.45 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -30.12 2.99 -699.10 -2.09 -32.21 16 10 C 0.18 8.21 5.30 86.36 0.46 8.67 16 11 C -0.12 -4.11 5.74 30.67 0.18 -3.94 16 12 C 0.11 3.55 2.42 30.62 0.07 3.63 16 13 O -0.33 -9.05 9.88 -51.37 -0.51 -9.55 16 14 C 0.47 12.90 7.24 71.24 0.52 13.42 16 15 O -0.52 -18.88 15.73 28.32 0.45 -18.44 16 16 C 0.12 2.33 3.26 29.81 0.10 2.42 16 17 H 0.15 2.15 8.14 -2.38 -0.02 2.13 16 18 C -0.11 -1.36 5.32 29.78 0.16 -1.20 16 19 C -0.04 -0.49 5.80 -19.62 -0.11 -0.61 16 20 C -0.12 -0.87 9.71 22.26 0.22 -0.65 16 21 C -0.07 -0.37 10.03 22.33 0.22 -0.15 16 22 C -0.13 -1.02 10.04 22.25 0.22 -0.80 16 23 C -0.06 -0.85 9.64 22.50 0.22 -0.63 16 24 C -0.20 -3.57 5.83 -20.06 -0.12 -3.69 16 25 C 0.53 13.68 7.83 70.45 0.55 14.24 16 26 O -0.48 -15.10 17.40 19.78 0.34 -14.76 16 27 O -0.37 -10.20 9.87 -60.87 -0.60 -10.80 16 28 C -0.14 -4.74 5.72 30.67 0.18 -4.57 16 29 C 0.15 6.11 6.52 86.36 0.56 6.68 16 30 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.07 3.66 6.06 -2.39 -0.01 3.65 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.07 2.49 7.16 -2.39 -0.02 2.47 16 36 H 0.11 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.15 1.03 8.13 -2.39 -0.02 1.01 16 38 H 0.16 0.30 8.06 -2.92 -0.02 0.27 16 39 H 0.17 -0.15 8.06 -2.91 -0.02 -0.17 16 40 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 41 H 0.13 1.94 7.77 -2.91 -0.02 1.92 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 Total: -1.00 -74.62 375.37 5.51 -69.10 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.01 Total: 7.46 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 4.64 Total: 17.16 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.85 Total: -85.79 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.32 Total: -53.55 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.62 5.51 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120949717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.863 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds