Wall clock time and date at job start Wed Apr 1 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47010 * 239.99882 * 3 2 1 5 5 H 1.48500 * 109.47315 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47178 * 119.99915 * 3 2 1 7 7 C 1.37875 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99722 * 175.05660 * 7 2 1 9 9 C 1.50697 * 120.00129 * 355.34373 * 7 2 1 10 10 C 1.53008 * 115.54490 * 279.19871 * 9 7 2 11 11 O 1.45203 * 109.46916 * 294.87971 * 10 9 7 12 12 C 1.34226 * 116.99995 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00183 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.47194 * 180.02562 * 14 12 11 16 16 N 1.46500 * 109.47101 * 179.97438 * 15 14 12 17 17 C 1.35087 * 120.50662 * 269.72417 * 16 15 14 18 18 O 1.21298 * 120.13608 * 1.68163 * 17 16 15 19 19 C 1.50745 * 119.74499 * 181.43991 * 17 16 15 20 20 O 1.43002 * 109.74024 * 329.14839 * 19 17 16 21 21 C 1.35983 * 116.70920 * 46.19871 * 20 19 17 22 22 C 1.38393 * 120.66167 * 147.14126 * 21 20 19 23 23 C 1.38323 * 119.87286 * 180.02562 * 22 21 20 24 24 C 1.38274 * 120.25710 * 359.96661 * 23 22 21 25 25 C 1.38292 * 120.19959 * 0.02562 * 24 23 22 26 26 C 1.38503 * 119.81731 * 0.03121 * 25 24 23 27 27 C 1.52997 * 117.50443 * 133.49263 * 9 7 2 28 28 C 1.52998 * 117.50221 * 64.86219 * 9 7 2 29 29 H 0.96995 * 120.00023 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47233 * 54.88091 * 10 9 7 31 31 H 1.09002 * 109.46764 * 174.88318 * 10 9 7 32 32 H 1.09004 * 109.46818 * 300.00054 * 14 12 11 33 33 H 1.08992 * 109.47068 * 60.00017 * 14 12 11 34 34 H 1.08995 * 109.46793 * 299.99746 * 15 14 12 35 35 H 1.08996 * 109.47030 * 60.00104 * 15 14 12 36 36 H 1.08996 * 109.54884 * 208.97077 * 19 17 16 37 37 H 1.08995 * 109.20055 * 89.11614 * 19 17 16 38 38 H 1.08000 * 120.06791 * 0.09677 * 22 21 20 39 39 H 1.07999 * 119.87271 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.90141 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.09292 * 179.97438 * 25 24 23 42 42 H 1.09007 * 117.49712 * 359.97438 * 27 9 7 43 43 H 1.08995 * 117.50458 * 145.01883 * 27 9 7 44 44 H 1.09004 * 117.49948 * 214.97742 * 28 9 7 45 45 H 1.08998 * 117.49533 * 359.97438 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1957 -0.0801 9 6 1.2548 -2.4969 0.1071 10 6 0.8316 -2.9009 1.5208 11 8 2.0131 -3.1553 2.3256 12 6 1.8140 -3.5224 3.6013 13 8 0.6897 -3.6282 4.0311 14 6 2.9927 -3.8027 4.4974 15 6 2.4931 -4.1989 5.8883 16 7 3.6390 -4.4719 6.7593 17 6 4.1528 -5.7183 6.8461 18 8 3.6866 -6.6170 6.1781 19 6 5.3114 -5.9868 7.7724 20 8 6.1255 -4.8161 7.8795 21 6 5.4777 -3.6373 8.0795 22 6 6.0587 -2.6316 8.8320 23 6 5.3849 -1.4391 9.0256 24 6 4.1334 -1.2478 8.4696 25 6 3.5465 -2.2482 7.7163 26 6 4.2156 -3.4448 7.5199 27 6 1.6417 -3.6160 -0.8619 28 6 0.3185 -2.8695 -1.0442 29 1 -0.4850 0.8400 -0.0004 30 1 0.2520 -2.0949 1.9709 31 1 0.2227 -3.8038 1.4737 32 1 3.5825 -4.6178 4.0778 33 1 3.6114 -2.9087 4.5742 34 1 1.9032 -3.3841 6.3081 35 1 1.8747 -5.0931 5.8111 36 1 5.9089 -6.8096 7.3800 37 1 4.9285 -6.2538 8.7573 38 1 7.0367 -2.7769 9.2664 39 1 5.8381 -0.6544 9.6132 40 1 3.6126 -0.3144 8.6240 41 1 2.5688 -2.0971 7.2832 42 1 2.4382 -3.4096 -1.5769 43 1 1.5948 -4.6403 -0.4924 44 1 -0.5987 -3.4029 -0.7945 45 1 0.2445 -2.1719 -1.8785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174748533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:14 Heat of formation + Delta-G solvation = -93.335282 kcal Electronic energy + Delta-G solvation = -29777.767726 eV Core-core repulsion = 25534.059257 eV Total energy + Delta-G solvation = -4243.708469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90198 -39.90143 -39.19048 -38.00075 -36.92341 -36.16065 -35.27327 -32.17192 -31.98798 -31.00796 -30.13912 -28.32726 -26.90352 -25.44128 -24.71733 -23.69337 -22.37930 -21.19145 -20.26521 -19.76754 -19.47746 -19.28205 -17.80146 -17.33720 -16.95572 -16.60732 -16.17851 -15.86649 -15.69062 -15.40847 -15.03101 -14.86770 -14.65150 -14.57654 -14.47356 -13.99000 -13.65100 -13.52494 -13.26369 -12.94880 -12.61875 -12.39054 -12.11275 -12.00193 -11.68674 -11.62073 -11.55601 -11.25961 -10.97208 -10.90609 -10.79470 -10.57950 -10.30064 -10.27678 -10.10168 -9.91115 -9.52395 -9.03453 -8.94926 -8.48171 -8.23481 -8.18887 -6.08802 -4.14596 0.72137 0.91084 1.95784 2.08604 2.65305 2.89453 3.26949 3.28883 3.33077 3.35936 3.40222 3.60440 4.27370 4.36931 4.49551 4.58169 4.67477 4.69457 4.78120 4.85565 4.94960 5.06505 5.13774 5.19936 5.29989 5.32048 5.49017 5.54173 5.59848 5.77755 5.84345 5.95211 6.02024 6.13318 6.21262 6.26389 6.29677 6.49044 6.54489 6.63990 6.72066 6.97076 7.02371 7.18235 7.32666 7.38061 7.46950 7.83898 8.28904 8.38764 8.86537 9.51055 11.00243 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.002815 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.974372 B = 9942.572932 C =11389.288538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.062 0.938 9 C 0.036 3.964 10 C 0.116 3.884 11 O -0.334 6.334 12 C 0.462 3.538 13 O -0.525 6.525 14 C -0.131 4.131 15 C 0.121 3.879 16 N -0.549 5.549 17 C 0.486 3.514 18 O -0.502 6.502 19 C 0.053 3.947 20 O -0.302 6.302 21 C 0.075 3.925 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.123 4.123 26 C 0.098 3.902 27 C -0.205 4.205 28 C -0.143 4.143 29 H 0.262 0.738 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.442 -6.294 20.360 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.035 3.965 10 C 0.043 3.957 11 O -0.249 6.249 12 C 0.305 3.695 13 O -0.416 6.416 14 C -0.170 4.170 15 C 0.000 4.000 16 N -0.274 5.274 17 C 0.274 3.726 18 O -0.376 6.376 19 C -0.025 4.025 20 O -0.217 6.217 21 C 0.029 3.971 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.143 4.143 26 C 0.003 3.997 27 C -0.242 4.242 28 C -0.181 4.181 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.116 0.884 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.828 -6.797 19.987 23.287 hybrid contribution -0.048 0.928 -0.129 0.939 sum 9.780 -5.869 19.859 22.901 Atomic orbital electron populations 1.69988 1.05877 1.26802 1.49172 1.25012 0.94871 0.99068 0.94503 0.86647 0.79643 0.82885 0.78805 1.20115 1.21238 1.20109 1.20353 0.92829 0.88371 1.51208 0.91971 1.18768 0.99416 0.93555 0.84728 1.22907 0.83119 0.98419 0.91221 1.86528 1.40615 1.76464 1.21296 1.23119 0.89952 0.73612 0.82856 1.90626 1.25732 1.49415 1.75790 1.21595 0.96664 1.05291 0.93455 1.21477 0.86211 1.04516 0.87800 1.45738 1.32427 1.07455 1.41794 1.21601 0.84904 0.82098 0.84027 1.90812 1.60684 1.43123 1.42991 1.23198 0.91144 0.88279 0.99852 1.86238 1.33452 1.13030 1.88947 1.18617 0.90702 0.88063 0.99734 1.20535 1.01361 0.92757 0.98068 1.21026 0.94993 0.96721 1.00364 1.21056 0.95548 0.98871 0.97075 1.20842 1.00637 0.92007 1.00850 1.18140 0.93420 0.90793 0.97306 1.22978 0.99543 0.95781 1.05948 1.22551 0.91432 1.01748 1.02363 0.92843 0.90681 0.94126 0.87488 0.87388 0.88269 0.87762 0.83620 0.88393 0.84383 0.84853 0.84876 0.84490 0.90080 0.91533 0.91716 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 12.86 55.43 0.71 -24.02 16 2 C 0.07 1.87 5.44 -17.82 -0.10 1.77 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.49 -13.37 8.75 -34.44 -0.30 -13.67 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.89 1.62 -155.66 -0.25 0.64 16 10 C 0.12 2.77 5.29 37.16 0.20 2.97 16 11 O -0.33 -7.35 10.16 -39.25 -0.40 -7.75 16 12 C 0.46 8.71 7.96 36.00 0.29 8.99 16 13 O -0.52 -10.81 15.73 -18.75 -0.30 -11.11 16 14 C -0.13 -1.88 6.14 -27.88 -0.17 -2.05 16 15 C 0.12 1.54 4.50 -4.04 -0.02 1.52 16 16 N -0.55 -6.39 2.72 -113.22 -0.31 -6.70 16 17 C 0.49 5.69 7.67 -10.82 -0.08 5.60 16 18 O -0.50 -7.42 16.76 5.54 0.09 -7.33 16 19 C 0.05 0.43 7.16 36.03 0.26 0.68 16 20 O -0.30 -2.89 10.45 -19.69 -0.21 -3.09 16 21 C 0.08 0.73 6.44 -39.09 -0.25 0.48 16 22 C -0.11 -0.85 10.00 -39.49 -0.39 -1.24 16 23 C -0.11 -0.78 10.04 -39.54 -0.40 -1.17 16 24 C -0.11 -0.83 10.04 -39.55 -0.40 -1.23 16 25 C -0.12 -1.16 9.36 -39.46 -0.37 -1.53 16 26 C 0.10 1.03 6.39 -83.50 -0.53 0.49 16 27 C -0.21 -4.54 9.96 -26.73 -0.27 -4.80 16 28 C -0.14 -3.35 9.39 -26.73 -0.25 -3.61 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.07 1.95 8.13 -51.93 -0.42 1.53 16 31 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.10 1.16 5.92 -51.93 -0.31 0.85 16 35 H 0.10 1.46 7.44 -51.93 -0.39 1.07 16 36 H 0.15 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.24 6.12 -52.49 -0.32 0.92 16 42 H 0.08 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 2.20 8.14 -51.93 -0.42 1.77 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -32.49 386.80 -8.69 -41.18 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.05 Total: 3.20 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.04 Total: -6.14 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.40 Total: -30.72 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.81 Total: -29.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.49 -8.69 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174748533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.155 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds