Wall clock time and date at job start Wed Apr 1 2020 03:04:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31561 * 1
3 3 Si 1.86799 * 119.99434 * 2 1
4 4 H 1.48507 * 109.47167 * 269.99630 * 3 2 1
5 5 H 1.48497 * 109.47461 * 29.99933 * 3 2 1
6 6 H 1.48501 * 109.47091 * 150.00350 * 3 2 1
7 7 C 1.38651 * 120.00058 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99648 * 180.02562 * 7 2 1
9 9 O 1.34831 * 120.00040 * 359.97438 * 7 2 1
10 10 C 1.35753 * 116.99416 * 185.06067 * 9 7 2
11 11 C 1.38879 * 120.07530 * 354.47214 * 10 9 7
12 12 C 1.38091 * 119.93371 * 180.02562 * 11 10 9
13 13 C 1.38304 * 120.06958 * 0.02562 * 12 11 10
14 14 C 1.50696 * 119.93396 * 179.97438 * 13 12 11
15 15 C 1.50701 * 109.47498 * 89.99863 * 14 13 12
16 16 O 1.21281 * 119.99600 * 359.97438 * 15 14 13
17 17 N 1.34770 * 120.00404 * 180.02562 * 15 14 13
18 18 C 1.47636 * 125.80215 * 0.02562 * 17 15 14
19 19 C 1.54974 * 104.95396 * 155.95063 * 18 17 15
20 20 C 1.55594 * 101.53178 * 36.61493 * 19 18 17
21 21 C 1.46298 * 125.80237 * 180.02562 * 17 15 14
22 22 C 1.53829 * 110.81427 * 302.10303 * 21 17 15
23 23 C 1.54733 * 101.92513 * 105.66594 * 22 21 17
24 24 O 1.45909 * 104.48805 * 26.37075 * 23 22 21
25 25 C 1.34297 * 109.91528 * 329.81748 * 24 23 22
26 26 O 1.20832 * 125.22719 * 200.60381 * 25 24 23
27 27 C 1.38302 * 120.13747 * 0.25283 * 13 12 11
28 28 C 1.38102 * 120.06788 * 359.45162 * 27 13 12
29 29 H 0.96996 * 120.00338 * 0.02562 * 1 2 3
30 30 H 1.08005 * 120.03242 * 0.03869 * 11 10 9
31 31 H 1.08004 * 119.97028 * 179.97438 * 12 11 10
32 32 H 1.09003 * 109.47140 * 329.99725 * 14 13 12
33 33 H 1.08996 * 109.47565 * 210.00060 * 14 13 12
34 34 H 1.08994 * 110.35967 * 274.85130 * 18 17 15
35 35 H 1.08996 * 110.35802 * 37.04933 * 18 17 15
36 36 H 1.08995 * 110.98728 * 154.77343 * 19 18 17
37 37 H 1.09001 * 110.98526 * 278.58188 * 19 18 17
38 38 H 1.09004 * 110.74235 * 206.76013 * 20 19 18
39 39 H 1.09001 * 110.90244 * 83.47547 * 20 19 18
40 40 H 1.09000 * 110.94215 * 223.82796 * 22 21 17
41 41 H 1.09004 * 110.94156 * 347.51686 * 22 21 17
42 42 H 1.09002 * 110.42656 * 145.12282 * 23 22 21
43 43 H 1.09000 * 110.43570 * 267.61565 * 23 22 21
44 44 H 1.07999 * 119.96437 * 179.70900 * 27 13 12
45 45 H 1.07999 * 120.03790 * 180.27958 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2494 1.6178 0.0000
4 1 2.4970 2.0465 -1.4001
5 1 1.4469 2.6527 0.7000
6 1 3.5471 1.4403 0.7000
7 6 2.0089 -1.2007 -0.0005
8 1 3.0889 -1.2007 -0.0001
9 8 1.3347 -2.3684 -0.0005
10 6 2.0702 -3.5045 0.1056
11 6 3.4574 -3.4394 0.0924
12 6 4.2026 -4.5969 0.2000
13 6 3.5690 -5.8204 0.3204
14 6 4.3853 -7.0817 0.4371
15 6 4.6646 -7.3668 1.8903
16 8 4.2427 -6.6189 2.7469
17 7 5.3840 -8.4521 2.2380
18 6 5.9583 -9.4425 1.3059
19 6 7.1428 -10.0777 2.0773
20 6 6.5799 -10.1259 3.5271
21 6 5.7286 -8.8490 3.6033
22 6 6.5078 -7.7312 4.3173
23 6 5.4402 -7.1638 5.2830
24 8 4.5303 -8.2800 5.5178
25 6 4.4953 -9.0768 4.4373
26 8 3.6104 -9.8565 4.1747
27 6 2.1877 -5.8892 0.3281
28 6 1.4368 -4.7346 0.2270
29 1 -0.4850 0.8400 -0.0004
30 1 3.9528 -2.4843 -0.0018
31 1 5.2815 -4.5470 0.1894
32 1 5.3276 -6.9553 -0.0960
33 1 3.8315 -7.9144 0.0035
34 1 5.2176 -10.2020 1.0560
35 1 6.3152 -8.9497 0.4016
36 1 7.3579 -11.0798 1.7063
37 1 8.0284 -9.4446 2.0230
38 1 7.3892 -10.0949 4.2567
39 1 5.9620 -11.0115 3.6751
40 1 7.3552 -8.1381 4.8691
41 1 6.8353 -6.9706 3.6085
42 1 5.9027 -6.8467 6.2177
43 1 4.9103 -6.3322 4.8184
44 1 1.6958 -6.8465 0.4176
45 1 0.3582 -4.7885 0.2376
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186467649.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:59
Heat of formation + Delta-G solvation = -103.436696 kcal
Electronic energy + Delta-G solvation = -30384.535288 eV
Core-core repulsion = 26140.388789 eV
Total energy + Delta-G solvation = -4244.146499 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.94949 -39.62311 -38.83586 -37.66458 -37.57643 -36.40280 -32.94807 -32.33340
-31.94944 -31.03678 -30.13836 -28.73296 -26.76395 -25.24980 -24.78453 -23.26529
-22.38184 -21.96299 -21.65952 -20.35579 -19.30898 -17.96649 -17.48470 -17.05519
-16.95635 -16.79091 -16.42122 -15.94982 -15.21708 -14.97060 -14.55256 -14.52629
-14.24764 -14.08577 -13.91731 -13.85254 -13.56410 -13.40469 -13.27837 -12.95785
-12.69423 -12.64147 -12.52188 -12.10034 -12.05628 -11.86356 -11.68020 -11.51899
-11.33075 -11.26067 -10.87071 -10.75948 -10.65721 -10.61052 -10.54336 -10.42079
-9.83874 -9.31369 -8.94601 -8.81015 -8.14011 -7.15911 -6.43122 -4.01865
1.69134 2.24513 2.26568 2.51539 2.79853 3.11386 3.13396 3.14761
3.19457 3.56910 3.79507 3.98012 3.99776 4.16207 4.39092 4.48269
4.54135 4.71376 4.84500 4.92111 5.08315 5.09359 5.13715 5.20306
5.23655 5.24419 5.28870 5.32323 5.35050 5.43097 5.60553 5.61460
5.64116 5.71406 5.86090 5.93106 6.23086 6.43125 6.55124 6.71161
6.92185 7.06074 7.15351 7.25818 7.30041 7.37057 7.46253 7.84796
8.01918 8.07063 9.02368 9.73008 10.74996
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.018101 B = 0.002481 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.515542 B =11282.058275 C =11582.926390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.863 5.863
2 C 0.039 3.961
3 Si 0.941 3.059
4 H -0.273 1.273
5 H -0.277 1.277
6 H -0.268 1.268
7 C -0.391 4.391
8 H 0.092 0.908
9 O -0.177 6.177
10 C 0.158 3.842
11 C -0.233 4.233
12 C -0.055 4.055
13 C -0.174 4.174
14 C -0.070 4.070
15 C 0.527 3.473
16 O -0.512 6.512
17 N -0.607 5.607
18 C 0.098 3.902
19 C -0.128 4.128
20 C -0.114 4.114
21 C 0.104 3.896
22 C -0.156 4.156
23 C 0.053 3.947
24 O -0.343 6.343
25 C 0.489 3.511
26 O -0.447 6.447
27 C -0.058 4.058
28 C -0.191 4.191
29 H 0.270 0.730
30 H 0.126 0.874
31 H 0.103 0.897
32 H 0.094 0.906
33 H 0.094 0.906
34 H 0.075 0.925
35 H 0.086 0.914
36 H 0.091 0.909
37 H 0.082 0.918
38 H 0.093 0.907
39 H 0.087 0.913
40 H 0.096 0.904
41 H 0.101 0.899
42 H 0.107 0.893
43 H 0.107 0.893
44 H 0.108 0.892
45 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.204 -19.732 4.367 27.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.498 5.498
2 C -0.165 4.165
3 Si 0.766 3.234
4 H -0.199 1.199
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.468 4.468
8 H 0.109 0.891
9 O -0.081 6.081
10 C 0.104 3.896
11 C -0.252 4.252
12 C -0.073 4.073
13 C -0.175 4.175
14 C -0.110 4.110
15 C 0.317 3.683
16 O -0.385 6.385
17 N -0.345 5.345
18 C -0.024 4.024
19 C -0.166 4.166
20 C -0.152 4.152
21 C 0.015 3.985
22 C -0.195 4.195
23 C -0.021 4.021
24 O -0.258 6.258
25 C 0.326 3.674
26 O -0.329 6.329
27 C -0.076 4.076
28 C -0.210 4.210
29 H 0.080 0.920
30 H 0.144 0.856
31 H 0.121 0.879
32 H 0.112 0.888
33 H 0.112 0.888
34 H 0.093 0.907
35 H 0.105 0.895
36 H 0.109 0.891
37 H 0.100 0.900
38 H 0.111 0.889
39 H 0.105 0.895
40 H 0.114 0.886
41 H 0.119 0.881
42 H 0.125 0.875
43 H 0.126 0.874
44 H 0.126 0.874
45 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 17.904 -19.380 4.864 26.829
hybrid contribution 0.591 0.856 -0.014 1.041
sum 18.495 -18.523 4.850 26.621
Atomic orbital electron populations
1.70041 1.05964 1.27656 1.46097 1.25293 0.95838 0.98831 0.96583
0.85715 0.78934 0.80120 0.78667 1.19890 1.20250 1.19203 1.21325
0.91785 0.80841 1.52801 0.89081 1.83982 1.34370 1.11468 1.78253
1.19381 0.90294 0.88004 0.91894 1.21089 0.93790 0.98729 1.11616
1.20471 0.97918 0.91704 0.97230 1.18599 0.93181 0.92603 1.13129
1.20366 1.01232 0.98286 0.91077 1.21045 0.76142 0.78407 0.92727
1.90708 1.49404 1.46511 1.51877 1.48543 1.55274 1.26046 1.04670
1.22478 0.95286 0.91493 0.93180 1.22869 0.97657 1.02184 0.93882
1.22652 0.98720 0.94936 0.98873 1.21693 0.94088 0.97149 0.85530
1.23251 0.98165 0.98583 0.99479 1.24335 0.89116 0.87955 1.00655
1.87056 1.63268 1.37016 1.38477 1.22976 0.86287 0.78569 0.79569
1.90681 1.38504 1.34932 1.68742 1.20417 0.92782 0.96773 0.97621
1.20163 0.99546 0.90257 1.11023 0.92022 0.85583 0.87887 0.88824
0.88800 0.90666 0.89545 0.89052 0.89962 0.88854 0.89473 0.88597
0.88059 0.87489 0.87445 0.87418 0.86519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16
2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16
3 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16
4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16
7 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16
8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16
9 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16
10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16
11 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16
12 C -0.05 -1.02 9.69 -39.61 -0.38 -1.40 16
13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.46 16
14 C -0.07 -0.87 4.85 -29.04 -0.14 -1.01 16
15 C 0.53 7.25 7.31 -10.99 -0.08 7.17 16
16 O -0.51 -9.07 12.99 5.56 0.07 -8.99 16
17 N -0.61 -6.33 2.83 -157.32 -0.44 -6.78 16
18 C 0.10 0.63 6.71 -2.38 -0.02 0.61 16
19 C -0.13 -0.54 7.11 -24.31 -0.17 -0.71 16
20 C -0.11 -0.70 6.06 -25.01 -0.15 -0.85 16
21 C 0.10 1.02 0.84 -132.35 -0.11 0.91 16
22 C -0.16 -1.28 5.98 -25.39 -0.15 -1.43 16
23 C 0.05 0.56 7.29 38.07 0.28 0.84 16
24 O -0.34 -4.81 11.07 -39.07 -0.43 -5.24 16
25 C 0.49 6.96 6.68 35.96 0.24 7.20 16
26 O -0.45 -7.73 17.95 -18.39 -0.33 -8.06 16
27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16
28 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16
29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
30 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16
31 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16
32 H 0.09 0.90 7.80 -51.93 -0.41 0.50 16
33 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16
34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
35 H 0.09 0.40 7.50 -51.93 -0.39 0.02 16
36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16
38 H 0.09 0.37 7.32 -51.93 -0.38 -0.01 16
39 H 0.09 0.60 7.86 -51.93 -0.41 0.20 16
40 H 0.10 0.48 7.31 -51.93 -0.38 0.10 16
41 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16
42 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16
43 H 0.11 1.42 6.34 -51.93 -0.33 1.10 16
44 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16
45 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16
LS Contribution 372.49 15.07 5.61 5.61
Total: -1.00 -36.88 372.49 -7.92 -44.80
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -5.78 Total: 2.97 kcal
Atomic # 6 Polarization: -7.57 SS G_CDS: -2.35 Total: -9.92 kcal
Atomic # 7 Polarization: -32.03 SS G_CDS: 0.31 Total: -31.72 kcal
Atomic # 8 Polarization: -26.79 SS G_CDS: -0.69 Total: -27.48 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -36.88 -7.92 -44.80 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186467649.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.633 kcal
(2) G-P(sol) polarization free energy of solvation -36.885 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.437 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds