Wall clock time and date at job start Wed Apr 1 2020 03:04:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31561 * 1
3 3 Si 1.86799 * 119.99434 * 2 1
4 4 H 1.48507 * 109.47167 * 269.99630 * 3 2 1
5 5 H 1.48497 * 109.47461 * 29.99933 * 3 2 1
6 6 H 1.48501 * 109.47091 * 150.00350 * 3 2 1
7 7 C 1.38651 * 120.00058 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99648 * 180.02562 * 7 2 1
9 9 O 1.34831 * 120.00040 * 359.97438 * 7 2 1
10 10 C 1.35753 * 116.99416 * 185.06067 * 9 7 2
11 11 C 1.38879 * 120.07530 * 354.47214 * 10 9 7
12 12 C 1.38091 * 119.93371 * 180.02562 * 11 10 9
13 13 C 1.38304 * 120.06958 * 0.02562 * 12 11 10
14 14 C 1.50696 * 119.93396 * 179.97438 * 13 12 11
15 15 C 1.50701 * 109.47498 * 89.99863 * 14 13 12
16 16 O 1.21281 * 119.99600 * 359.97438 * 15 14 13
17 17 N 1.34770 * 120.00404 * 180.02562 * 15 14 13
18 18 C 1.47636 * 125.80215 * 0.02562 * 17 15 14
19 19 C 1.54974 * 104.95396 * 155.95063 * 18 17 15
20 20 C 1.55594 * 101.53178 * 36.61493 * 19 18 17
21 21 C 1.46298 * 125.80237 * 180.02562 * 17 15 14
22 22 C 1.53829 * 110.81427 * 302.10303 * 21 17 15
23 23 C 1.54733 * 101.92513 * 105.66594 * 22 21 17
24 24 O 1.45909 * 104.48805 * 26.37075 * 23 22 21
25 25 C 1.34297 * 109.91528 * 329.81748 * 24 23 22
26 26 O 1.20832 * 125.22719 * 200.60381 * 25 24 23
27 27 C 1.38302 * 120.13747 * 0.25283 * 13 12 11
28 28 C 1.38102 * 120.06788 * 359.45162 * 27 13 12
29 29 H 0.96996 * 120.00338 * 0.02562 * 1 2 3
30 30 H 1.08005 * 120.03242 * 0.03869 * 11 10 9
31 31 H 1.08004 * 119.97028 * 179.97438 * 12 11 10
32 32 H 1.09003 * 109.47140 * 329.99725 * 14 13 12
33 33 H 1.08996 * 109.47565 * 210.00060 * 14 13 12
34 34 H 1.08994 * 110.35967 * 274.85130 * 18 17 15
35 35 H 1.08996 * 110.35802 * 37.04933 * 18 17 15
36 36 H 1.08995 * 110.98728 * 154.77343 * 19 18 17
37 37 H 1.09001 * 110.98526 * 278.58188 * 19 18 17
38 38 H 1.09004 * 110.74235 * 206.76013 * 20 19 18
39 39 H 1.09001 * 110.90244 * 83.47547 * 20 19 18
40 40 H 1.09000 * 110.94215 * 223.82796 * 22 21 17
41 41 H 1.09004 * 110.94156 * 347.51686 * 22 21 17
42 42 H 1.09002 * 110.42656 * 145.12282 * 23 22 21
43 43 H 1.09000 * 110.43570 * 267.61565 * 23 22 21
44 44 H 1.07999 * 119.96437 * 179.70900 * 27 13 12
45 45 H 1.07999 * 120.03790 * 180.27958 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2494 1.6178 0.0000
4 1 2.4970 2.0465 -1.4001
5 1 1.4469 2.6527 0.7000
6 1 3.5471 1.4403 0.7000
7 6 2.0089 -1.2007 -0.0005
8 1 3.0889 -1.2007 -0.0001
9 8 1.3347 -2.3684 -0.0005
10 6 2.0702 -3.5045 0.1056
11 6 3.4574 -3.4394 0.0924
12 6 4.2026 -4.5969 0.2000
13 6 3.5690 -5.8204 0.3204
14 6 4.3853 -7.0817 0.4371
15 6 4.6646 -7.3668 1.8903
16 8 4.2427 -6.6189 2.7469
17 7 5.3840 -8.4521 2.2380
18 6 5.9583 -9.4425 1.3059
19 6 7.1428 -10.0777 2.0773
20 6 6.5799 -10.1259 3.5271
21 6 5.7286 -8.8490 3.6033
22 6 6.5078 -7.7312 4.3173
23 6 5.4402 -7.1638 5.2830
24 8 4.5303 -8.2800 5.5178
25 6 4.4953 -9.0768 4.4373
26 8 3.6104 -9.8565 4.1747
27 6 2.1877 -5.8892 0.3281
28 6 1.4368 -4.7346 0.2270
29 1 -0.4850 0.8400 -0.0004
30 1 3.9528 -2.4843 -0.0018
31 1 5.2815 -4.5470 0.1894
32 1 5.3276 -6.9553 -0.0960
33 1 3.8315 -7.9144 0.0035
34 1 5.2176 -10.2020 1.0560
35 1 6.3152 -8.9497 0.4016
36 1 7.3579 -11.0798 1.7063
37 1 8.0284 -9.4446 2.0230
38 1 7.3892 -10.0949 4.2567
39 1 5.9620 -11.0115 3.6751
40 1 7.3552 -8.1381 4.8691
41 1 6.8353 -6.9706 3.6085
42 1 5.9027 -6.8467 6.2177
43 1 4.9103 -6.3322 4.8184
44 1 1.6958 -6.8465 0.4176
45 1 0.3582 -4.7885 0.2376
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186467649.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:04:58
Heat of formation + Delta-G solvation = -128.125955 kcal
Electronic energy + Delta-G solvation = -30385.605894 eV
Core-core repulsion = 26140.388789 eV
Total energy + Delta-G solvation = -4245.217105 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.145 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.82143 -40.97597 -40.28447 -38.70690 -38.66750 -37.96279 -34.43611 -33.74957
-32.63839 -32.31209 -31.79683 -29.47210 -28.25860 -27.05682 -25.59913 -24.05405
-23.66155 -23.21001 -22.64577 -21.58518 -20.27958 -19.85625 -18.84344 -18.44217
-18.04210 -17.65742 -17.20820 -16.90724 -16.49947 -16.36928 -16.11184 -15.80007
-15.59361 -15.47215 -15.10660 -14.92258 -14.71233 -14.47051 -14.44235 -14.20084
-13.86887 -13.61186 -13.60465 -13.37545 -12.98412 -12.90576 -12.79137 -12.62631
-12.48572 -12.35178 -12.30284 -12.13696 -12.06162 -11.85717 -11.52880 -11.37750
-11.19379 -10.96063 -10.76808 -9.79747 -9.77494 -8.93265 -8.48153 -6.16815
0.58013 0.59392 0.74944 1.33558 1.43426 1.51491 1.52037 1.91656
2.17078 2.21213 2.75224 2.81980 3.12476 3.17391 3.43455 3.49826
3.65506 3.72647 3.82955 4.01139 4.05506 4.11083 4.15885 4.18016
4.42187 4.48052 4.53785 4.56331 4.62378 4.67673 4.76134 4.77790
4.80079 4.84307 4.92770 5.05021 5.10486 5.13043 5.22385 5.27748
5.32741 5.53710 5.61763 5.69440 5.74406 6.01501 6.16138 6.21091
6.39096 6.96141 7.09135 7.77456 8.75523
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.018101 B = 0.002481 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.515542 B =11282.058275 C =11582.926390
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.025 4.025
3 Si 1.021 2.979
4 H -0.260 1.260
5 H -0.272 1.272
6 H -0.252 1.252
7 C -0.414 4.414
8 H 0.103 0.897
9 O -0.234 6.234
10 C 0.115 3.885
11 C -0.241 4.241
12 C -0.052 4.052
13 C -0.146 4.146
14 C -0.068 4.068
15 C 0.521 3.479
16 O -0.565 6.565
17 N -0.602 5.602
18 C 0.084 3.916
19 C -0.114 4.114
20 C -0.112 4.112
21 C 0.102 3.898
22 C -0.143 4.143
23 C 0.046 3.954
24 O -0.369 6.369
25 C 0.475 3.525
26 O -0.494 6.494
27 C -0.061 4.061
28 C -0.209 4.209
29 H 0.273 0.727
30 H 0.121 0.879
31 H 0.146 0.854
32 H 0.138 0.862
33 H 0.120 0.880
34 H 0.074 0.926
35 H 0.114 0.886
36 H 0.114 0.886
37 H 0.101 0.899
38 H 0.122 0.878
39 H 0.074 0.926
40 H 0.137 0.863
41 H 0.102 0.898
42 H 0.139 0.861
43 H 0.073 0.927
44 H 0.135 0.865
45 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.577 -22.056 3.890 33.251
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.222 4.222
3 Si 0.840 3.160
4 H -0.185 1.185
5 H -0.197 1.197
6 H -0.176 1.176
7 C -0.490 4.490
8 H 0.120 0.880
9 O -0.141 6.141
10 C 0.064 3.936
11 C -0.260 4.260
12 C -0.070 4.070
13 C -0.147 4.147
14 C -0.107 4.107
15 C 0.312 3.688
16 O -0.442 6.442
17 N -0.339 5.339
18 C -0.036 4.036
19 C -0.152 4.152
20 C -0.149 4.149
21 C 0.014 3.986
22 C -0.181 4.181
23 C -0.028 4.028
24 O -0.285 6.285
25 C 0.315 3.685
26 O -0.380 6.380
27 C -0.079 4.079
28 C -0.228 4.228
29 H 0.082 0.918
30 H 0.139 0.861
31 H 0.163 0.837
32 H 0.156 0.844
33 H 0.138 0.862
34 H 0.092 0.908
35 H 0.132 0.868
36 H 0.132 0.868
37 H 0.119 0.881
38 H 0.140 0.860
39 H 0.093 0.907
40 H 0.155 0.845
41 H 0.120 0.880
42 H 0.157 0.843
43 H 0.092 0.908
44 H 0.153 0.847
45 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 23.351 -21.792 4.372 32.238
hybrid contribution -0.988 1.181 0.219 1.555
sum 22.363 -20.612 4.591 30.758
Atomic orbital electron populations
1.70199 1.08157 1.28825 1.49001 1.26659 0.96875 1.02892 0.95820
0.84560 0.77761 0.74296 0.79396 1.18457 1.19691 1.17563 1.21855
0.92573 0.81402 1.53179 0.87976 1.83946 1.36077 1.12656 1.81452
1.19904 0.91821 0.87748 0.94081 1.21243 0.92864 1.00191 1.11732
1.20919 0.99883 0.90636 0.95526 1.19188 0.92946 0.94637 1.07935
1.20479 1.02797 0.96206 0.91227 1.21128 0.76137 0.78907 0.92598
1.90727 1.51686 1.48698 1.53122 1.48564 1.53940 1.25436 1.05919
1.22889 0.96123 0.90920 0.93692 1.22914 0.97015 1.03703 0.91529
1.22766 0.98613 0.92150 1.01416 1.21919 0.92339 0.99723 0.84617
1.23322 0.98120 0.97771 0.98883 1.24526 0.89122 0.86190 1.02913
1.87010 1.64498 1.37773 1.39191 1.23922 0.87164 0.77484 0.79882
1.90632 1.40597 1.36794 1.69934 1.20813 0.93930 0.96578 0.96587
1.20388 0.99698 0.90885 1.11829 0.91843 0.86120 0.83651 0.84403
0.86187 0.90777 0.86835 0.86765 0.88055 0.85957 0.90725 0.84450
0.88000 0.84270 0.90846 0.84750 0.87504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -58.47 13.67 21.61 0.30 -58.17 16
2 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16
3 Si 1.02 43.77 29.55 68.60 2.03 45.79 16
4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16
5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16
7 C -0.41 -24.90 9.49 67.92 0.64 -24.26 16
8 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16
9 O -0.23 -14.78 9.76 -22.79 -0.22 -15.00 16
10 C 0.11 6.05 6.65 22.58 0.15 6.20 16
11 C -0.24 -10.86 9.17 22.39 0.21 -10.66 16
12 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16
13 C -0.15 -4.66 4.38 -19.83 -0.09 -4.75 16
14 C -0.07 -1.38 4.85 29.10 0.14 -1.23 16
15 C 0.52 12.79 7.31 87.66 0.64 13.43 16
16 O -0.56 -19.48 12.99 -3.03 -0.04 -19.52 16
17 N -0.60 -10.38 2.83 -770.04 -2.18 -12.56 16
18 C 0.08 0.65 6.71 86.84 0.58 1.23 16
19 C -0.11 -0.29 7.11 32.16 0.23 -0.07 16
20 C -0.11 -0.89 6.06 31.71 0.19 -0.70 16
21 C 0.10 1.72 0.84 3.37 0.00 1.72 16
22 C -0.14 -1.83 5.98 31.46 0.19 -1.65 16
23 C 0.05 0.91 7.29 72.57 0.53 1.44 16
24 O -0.37 -10.41 11.07 -52.41 -0.58 -10.99 16
25 C 0.48 13.39 6.68 71.21 0.48 13.86 16
26 O -0.49 -17.50 17.95 21.60 0.39 -17.11 16
27 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16
28 C -0.21 -9.73 9.99 22.39 0.22 -9.51 16
29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16
30 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16
31 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16
32 H 0.14 1.67 7.80 -2.39 -0.02 1.65 16
33 H 0.12 1.91 8.08 -2.39 -0.02 1.90 16
34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
35 H 0.11 0.30 7.50 -2.39 -0.02 0.28 16
36 H 0.11 -0.13 8.14 -2.39 -0.02 -0.14 16
37 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16
38 H 0.12 0.29 7.32 -2.38 -0.02 0.27 16
39 H 0.07 0.83 7.86 -2.39 -0.02 0.81 16
40 H 0.14 0.62 7.31 -2.39 -0.02 0.60 16
41 H 0.10 1.36 7.85 -2.38 -0.02 1.34 16
42 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16
43 H 0.07 1.99 6.34 -2.39 -0.02 1.98 16
44 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16
45 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16
Total: -1.00 -92.49 372.49 5.73 -86.76
By element:
Atomic # 1 Polarization: 19.37 SS G_CDS: 1.03 Total: 20.40 kcal
Atomic # 6 Polarization: -24.60 SS G_CDS: 5.02 Total: -19.59 kcal
Atomic # 7 Polarization: -68.85 SS G_CDS: -1.88 Total: -70.74 kcal
Atomic # 8 Polarization: -62.17 SS G_CDS: -0.45 Total: -62.63 kcal
Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -92.49 5.73 -86.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186467649.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.370 kcal
(2) G-P(sol) polarization free energy of solvation -92.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.126 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds