Wall clock time and date at job start Wed Apr 1 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47544 * 270.00200 * 3 2 1 5 5 H 1.48503 * 109.47461 * 30.00529 * 3 2 1 6 6 H 1.48506 * 109.46995 * 150.00175 * 3 2 1 7 7 C 1.38650 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00374 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99855 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00190 * 185.05856 * 9 7 2 11 11 C 1.38883 * 120.06458 * 354.45852 * 10 9 7 12 12 C 1.38102 * 119.92632 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07269 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93208 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47145 * 90.00426 * 14 13 12 16 16 O 1.21281 * 119.99991 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00136 * 180.02562 * 15 14 13 18 18 C 1.47637 * 125.79737 * 0.02562 * 17 15 14 19 19 C 1.54972 * 104.85284 * 155.97051 * 18 17 15 20 20 C 1.55307 * 101.65955 * 36.62839 * 19 18 17 21 21 C 1.46286 * 125.80256 * 179.97438 * 17 15 14 22 22 C 1.53814 * 110.85282 * 60.29767 * 21 17 15 23 23 C 1.54730 * 101.92986 * 254.29674 * 22 21 17 24 24 O 1.46101 * 104.41131 * 333.44909 * 23 22 21 25 25 C 1.34292 * 109.79638 * 30.55757 * 24 23 22 26 26 O 1.20829 * 125.23081 * 159.23433 * 25 24 23 27 27 C 1.38306 * 120.13900 * 0.27649 * 13 12 11 28 28 C 1.38107 * 120.06571 * 359.49035 * 27 13 12 29 29 H 0.96996 * 120.00578 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.03685 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96273 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.47102 * 329.99917 * 14 13 12 33 33 H 1.09001 * 109.46983 * 210.00110 * 14 13 12 34 34 H 1.08997 * 110.36432 * 37.12304 * 18 17 15 35 35 H 1.09001 * 110.45102 * 274.86046 * 18 17 15 36 36 H 1.09007 * 110.98724 * 278.53593 * 19 18 17 37 37 H 1.09007 * 111.02281 * 154.73833 * 19 18 17 38 38 H 1.09004 * 110.76112 * 206.74330 * 20 19 18 39 39 H 1.09007 * 110.91590 * 83.44009 * 20 19 18 40 40 H 1.08998 * 110.93954 * 12.45450 * 22 21 17 41 41 H 1.08998 * 110.93469 * 136.09974 * 22 21 17 42 42 H 1.08997 * 110.43135 * 92.40817 * 23 22 21 43 43 H 1.09004 * 110.42624 * 214.78273 * 23 22 21 44 44 H 1.07998 * 119.97057 * 179.72234 * 27 13 12 45 45 H 1.07996 * 120.03500 * 180.25839 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1361 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1082 11 6 3.2235 -3.5743 -0.0951 12 6 3.8535 -4.7984 -0.2049 13 6 5.2295 -4.8610 -0.3282 14 6 5.9136 -6.1985 -0.4472 15 6 6.0179 -6.5819 -1.9008 16 8 5.5793 -5.8421 -2.7560 17 7 6.5975 -7.7473 -2.2505 18 6 7.1702 -8.7404 -1.3201 19 6 7.1260 -10.0820 -2.0945 20 6 7.4457 -9.6195 -3.5422 21 6 6.7653 -8.2438 -3.6163 22 6 7.6165 -7.2722 -4.4513 23 6 6.5504 -6.6088 -5.3554 24 8 5.4877 -7.6063 -5.4566 25 6 5.4433 -8.3391 -4.3321 26 8 4.4912 -8.9805 -3.9553 27 6 5.9796 -3.6991 -0.3364 28 6 5.3552 -2.4717 -0.2318 29 1 -0.4851 0.8400 0.0004 30 1 2.1489 -3.5260 -0.0001 31 1 3.2708 -5.7076 -0.1952 32 1 5.3343 -6.9517 0.0867 33 1 6.9126 -6.1352 -0.0156 34 1 6.5662 -8.8047 -0.4151 35 1 8.1989 -8.4799 -1.0709 36 1 6.1350 -10.5327 -2.0384 37 1 7.8871 -10.7706 -1.7274 38 1 7.0125 -10.3043 -4.2712 39 1 8.5214 -9.5273 -3.6926 40 1 8.1015 -6.5328 -3.8141 41 1 8.3521 -7.8124 -5.0473 42 1 6.1766 -5.6944 -4.8948 43 1 6.9662 -6.3955 -6.3402 44 1 7.0544 -3.7514 -0.4283 45 1 5.9410 -1.5645 -0.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186467659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:02 Heat of formation + Delta-G solvation = -101.536725 kcal Electronic energy + Delta-G solvation = -30437.779987 eV Core-core repulsion = 26193.715877 eV Total energy + Delta-G solvation = -4244.064110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.96798 -39.67189 -38.95916 -37.71936 -37.55355 -36.55407 -32.96040 -32.40489 -32.06250 -31.20293 -30.23010 -28.70438 -26.99238 -25.16564 -24.71580 -22.98675 -22.84127 -22.10066 -21.45514 -20.32285 -19.31335 -17.87829 -17.53067 -17.44570 -17.24693 -16.82372 -16.02485 -15.73024 -15.37166 -15.08575 -14.76656 -14.53112 -14.25419 -14.07038 -13.92812 -13.80161 -13.70115 -13.55162 -13.24090 -13.03635 -12.69393 -12.68095 -12.51787 -12.20097 -12.14919 -11.78620 -11.73832 -11.67835 -11.46289 -11.30192 -10.94928 -10.76864 -10.69903 -10.67101 -10.49366 -10.14379 -9.88572 -9.36659 -8.97447 -8.84455 -8.23034 -7.30747 -6.39499 -4.06056 1.69343 2.14431 2.16692 2.47731 2.76674 3.10661 3.23315 3.27385 3.41326 3.56356 3.76445 3.95378 4.17294 4.25338 4.34815 4.45129 4.54530 4.67840 4.79862 4.86625 4.91813 5.02313 5.10913 5.12014 5.15303 5.19600 5.23128 5.26854 5.34743 5.38772 5.55331 5.57560 5.66085 5.67377 5.74123 5.89921 6.14409 6.33476 6.53607 6.56879 6.79978 7.01233 7.13678 7.22380 7.29838 7.32143 7.62631 7.82569 8.03056 8.05884 8.95593 9.57693 10.68222 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.002532 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.792839 B =11056.113478 C =11429.589179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.217 6.217 10 C 0.163 3.837 11 C -0.219 4.219 12 C -0.056 4.056 13 C -0.165 4.165 14 C -0.072 4.072 15 C 0.527 3.473 16 O -0.512 6.512 17 N -0.607 5.607 18 C 0.100 3.900 19 C -0.134 4.134 20 C -0.110 4.110 21 C 0.103 3.897 22 C -0.158 4.158 23 C 0.054 3.946 24 O -0.343 6.343 25 C 0.489 3.511 26 O -0.444 6.444 27 C -0.060 4.060 28 C -0.192 4.192 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.499 -20.107 -4.916 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.111 3.889 11 C -0.238 4.238 12 C -0.074 4.074 13 C -0.167 4.167 14 C -0.111 4.111 15 C 0.317 3.683 16 O -0.385 6.385 17 N -0.346 5.346 18 C -0.022 4.022 19 C -0.172 4.172 20 C -0.148 4.148 21 C 0.015 3.985 22 C -0.196 4.196 23 C -0.020 4.020 24 O -0.258 6.258 25 C 0.326 3.674 26 O -0.326 6.326 27 C -0.079 4.079 28 C -0.211 4.211 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.467 -19.531 -5.336 28.789 hybrid contribution 0.172 0.665 -0.019 0.687 sum 20.638 -18.866 -5.355 28.470 Atomic orbital electron populations 1.69647 1.05581 1.28487 1.48021 1.24470 0.95025 0.98827 0.95686 0.86177 0.80299 0.81419 0.78970 1.19876 1.20789 1.18358 1.20780 0.76881 0.96669 1.52138 0.87616 1.83566 1.22639 1.25791 1.80183 1.19124 0.91713 0.85460 0.92591 1.21230 1.01098 0.91765 1.09674 1.20581 0.93264 0.96803 0.96764 1.18668 0.93582 0.92363 1.12042 1.20384 1.02384 0.97128 0.91251 1.20997 0.76015 0.78688 0.92620 1.90720 1.45723 1.50079 1.51986 1.48547 1.60794 1.20329 1.04904 1.22451 0.99080 0.87326 0.93352 1.22878 1.03737 0.96656 0.93895 1.22544 1.01064 0.92323 0.98878 1.21733 0.94250 0.96817 0.85668 1.23241 0.97979 0.99495 0.98887 1.24323 0.84774 0.91200 1.01704 1.87107 1.55014 1.45764 1.37934 1.22923 0.88496 0.76811 0.79160 1.90684 1.37647 1.39749 1.64521 1.20370 0.98020 0.91314 0.98173 1.20136 0.91945 0.97704 1.11300 0.91047 0.84937 0.87562 0.88696 0.88671 0.89721 0.90580 0.89734 0.89039 0.89511 0.88842 0.88075 0.88535 0.87598 0.87478 0.87243 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.96 55.48 0.77 -25.15 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 3 Si 0.91 22.03 28.62 -169.99 -4.86 17.16 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.39 -11.23 9.95 30.88 0.31 -10.93 16 8 H 0.11 3.13 5.44 -52.49 -0.29 2.85 16 9 O -0.22 -5.85 8.59 0.04 0.00 -5.85 16 10 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.22 -4.92 9.17 -39.39 -0.36 -5.28 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 13 C -0.17 -2.75 4.38 -104.58 -0.46 -3.21 16 14 C -0.07 -0.86 4.85 -29.04 -0.14 -1.00 16 15 C 0.53 7.06 7.36 -10.99 -0.08 6.98 16 16 O -0.51 -8.91 13.06 5.56 0.07 -8.84 16 17 N -0.61 -6.13 2.82 -157.33 -0.44 -6.58 16 18 C 0.10 0.61 6.71 -2.38 -0.02 0.59 16 19 C -0.13 -0.70 7.09 -24.47 -0.17 -0.87 16 20 C -0.11 -0.65 5.95 -25.17 -0.15 -0.80 16 21 C 0.10 0.99 0.84 -132.35 -0.11 0.88 16 22 C -0.16 -1.21 5.96 -25.40 -0.15 -1.36 16 23 C 0.05 0.55 7.29 38.07 0.28 0.83 16 24 O -0.34 -4.78 11.08 -39.06 -0.43 -5.21 16 25 C 0.49 6.93 6.48 35.97 0.23 7.17 16 26 O -0.44 -7.71 18.00 -18.39 -0.33 -8.04 16 27 C -0.06 -1.03 9.69 -39.60 -0.38 -1.41 16 28 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 29 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.13 3.15 5.64 -52.49 -0.30 2.85 16 31 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 0.98 7.80 -51.93 -0.41 0.58 16 33 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.08 0.46 7.50 -51.93 -0.39 0.07 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.53 7.82 -51.93 -0.41 0.13 16 39 H 0.09 0.32 7.68 -51.92 -0.40 -0.08 16 40 H 0.10 0.79 7.92 -51.93 -0.41 0.38 16 41 H 0.10 0.44 7.61 -51.93 -0.40 0.05 16 42 H 0.11 1.35 6.44 -51.93 -0.33 1.01 16 43 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 45 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -36.22 371.97 -7.80 -44.02 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.84 Total: 1.69 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.34 Total: -8.80 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.33 Total: -31.72 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.69 Total: -27.95 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.22 -7.80 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186467659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.519 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds