Wall clock time and date at job start Wed Apr 1 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99578 * 2 1 4 4 H 1.48500 * 109.47544 * 270.00200 * 3 2 1 5 5 H 1.48503 * 109.47461 * 30.00529 * 3 2 1 6 6 H 1.48506 * 109.46995 * 150.00175 * 3 2 1 7 7 C 1.38650 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00374 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99855 * 179.97438 * 7 2 1 10 10 C 1.35755 * 117.00190 * 185.05856 * 9 7 2 11 11 C 1.38883 * 120.06458 * 354.45852 * 10 9 7 12 12 C 1.38102 * 119.92632 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07269 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93208 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.47145 * 90.00426 * 14 13 12 16 16 O 1.21281 * 119.99991 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00136 * 180.02562 * 15 14 13 18 18 C 1.47637 * 125.79737 * 0.02562 * 17 15 14 19 19 C 1.54972 * 104.85284 * 155.97051 * 18 17 15 20 20 C 1.55307 * 101.65955 * 36.62839 * 19 18 17 21 21 C 1.46286 * 125.80256 * 179.97438 * 17 15 14 22 22 C 1.53814 * 110.85282 * 60.29767 * 21 17 15 23 23 C 1.54730 * 101.92986 * 254.29674 * 22 21 17 24 24 O 1.46101 * 104.41131 * 333.44909 * 23 22 21 25 25 C 1.34292 * 109.79638 * 30.55757 * 24 23 22 26 26 O 1.20829 * 125.23081 * 159.23433 * 25 24 23 27 27 C 1.38306 * 120.13900 * 0.27649 * 13 12 11 28 28 C 1.38107 * 120.06571 * 359.49035 * 27 13 12 29 29 H 0.96996 * 120.00578 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.03685 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.96273 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.47102 * 329.99917 * 14 13 12 33 33 H 1.09001 * 109.46983 * 210.00110 * 14 13 12 34 34 H 1.08997 * 110.36432 * 37.12304 * 18 17 15 35 35 H 1.09001 * 110.45102 * 274.86046 * 18 17 15 36 36 H 1.09007 * 110.98724 * 278.53593 * 19 18 17 37 37 H 1.09007 * 111.02281 * 154.73833 * 19 18 17 38 38 H 1.09004 * 110.76112 * 206.74330 * 20 19 18 39 39 H 1.09007 * 110.91590 * 83.44009 * 20 19 18 40 40 H 1.08998 * 110.93954 * 12.45450 * 22 21 17 41 41 H 1.08998 * 110.93469 * 136.09974 * 22 21 17 42 42 H 1.08997 * 110.43135 * 92.40817 * 23 22 21 43 43 H 1.09004 * 110.42624 * 214.78273 * 23 22 21 44 44 H 1.07998 * 119.97057 * 179.72234 * 27 13 12 45 45 H 1.07996 * 120.03500 * 180.25839 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1361 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9735 -2.4055 -0.1082 11 6 3.2235 -3.5743 -0.0951 12 6 3.8535 -4.7984 -0.2049 13 6 5.2295 -4.8610 -0.3282 14 6 5.9136 -6.1985 -0.4472 15 6 6.0179 -6.5819 -1.9008 16 8 5.5793 -5.8421 -2.7560 17 7 6.5975 -7.7473 -2.2505 18 6 7.1702 -8.7404 -1.3201 19 6 7.1260 -10.0820 -2.0945 20 6 7.4457 -9.6195 -3.5422 21 6 6.7653 -8.2438 -3.6163 22 6 7.6165 -7.2722 -4.4513 23 6 6.5504 -6.6088 -5.3554 24 8 5.4877 -7.6063 -5.4566 25 6 5.4433 -8.3391 -4.3321 26 8 4.4912 -8.9805 -3.9553 27 6 5.9796 -3.6991 -0.3364 28 6 5.3552 -2.4717 -0.2318 29 1 -0.4851 0.8400 0.0004 30 1 2.1489 -3.5260 -0.0001 31 1 3.2708 -5.7076 -0.1952 32 1 5.3343 -6.9517 0.0867 33 1 6.9126 -6.1352 -0.0156 34 1 6.5662 -8.8047 -0.4151 35 1 8.1989 -8.4799 -1.0709 36 1 6.1350 -10.5327 -2.0384 37 1 7.8871 -10.7706 -1.7274 38 1 7.0125 -10.3043 -4.2712 39 1 8.5214 -9.5273 -3.6926 40 1 8.1015 -6.5328 -3.8141 41 1 8.3521 -7.8124 -5.0473 42 1 6.1766 -5.6944 -4.8948 43 1 6.9662 -6.3955 -6.3402 44 1 7.0544 -3.7514 -0.4283 45 1 5.9410 -1.5645 -0.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186467659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:01 Heat of formation + Delta-G solvation = -125.658479 kcal Electronic energy + Delta-G solvation = -30438.825985 eV Core-core repulsion = 26193.715877 eV Total energy + Delta-G solvation = -4245.110108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.82046 -41.05540 -40.32488 -38.72053 -38.68975 -38.01489 -34.56190 -33.79219 -32.76528 -32.39298 -31.83627 -29.42273 -28.46028 -26.88064 -25.57596 -23.81109 -23.74887 -23.58745 -22.49092 -21.49689 -20.26010 -19.83313 -19.12601 -18.45782 -18.26468 -17.78808 -16.97470 -16.84279 -16.52263 -16.36498 -16.03605 -15.70813 -15.63848 -15.53009 -15.18914 -15.03428 -14.81407 -14.50934 -14.38680 -14.23948 -14.09471 -13.80557 -13.69961 -13.45864 -13.06620 -12.94886 -12.77858 -12.55320 -12.45547 -12.38728 -12.29176 -12.14730 -12.06209 -11.93915 -11.57835 -11.32226 -11.28542 -11.00460 -10.86646 -9.82252 -9.77048 -9.02125 -8.52852 -6.26221 0.54218 0.55594 0.75009 1.28705 1.33960 1.50256 1.51180 1.91439 2.22376 2.26126 2.73710 2.77784 3.01092 3.13508 3.16970 3.41149 3.63966 3.73803 3.82353 3.98325 4.03510 4.09429 4.13174 4.17705 4.39963 4.48524 4.53532 4.53769 4.62580 4.69380 4.73549 4.78840 4.81037 4.86982 4.88954 4.94705 5.07762 5.20629 5.22515 5.30438 5.35078 5.52932 5.62354 5.70485 5.76511 5.88256 6.18074 6.22680 6.39364 6.80949 7.08741 7.54763 8.59289 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.002532 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.792839 B =11056.113478 C =11429.589179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.402 4.402 8 H 0.075 0.925 9 O -0.243 6.243 10 C 0.120 3.880 11 C -0.240 4.240 12 C -0.069 4.069 13 C -0.138 4.138 14 C -0.070 4.070 15 C 0.521 3.479 16 O -0.566 6.566 17 N -0.603 5.603 18 C 0.091 3.909 19 C -0.131 4.131 20 C -0.105 4.105 21 C 0.102 3.898 22 C -0.143 4.143 23 C 0.045 3.955 24 O -0.371 6.371 25 C 0.474 3.526 26 O -0.495 6.495 27 C -0.051 4.051 28 C -0.190 4.190 29 H 0.285 0.715 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.161 0.839 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.506 -22.055 -4.583 35.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.478 4.478 8 H 0.092 0.908 9 O -0.151 6.151 10 C 0.071 3.929 11 C -0.260 4.260 12 C -0.087 4.087 13 C -0.139 4.139 14 C -0.109 4.109 15 C 0.312 3.688 16 O -0.444 6.444 17 N -0.339 5.339 18 C -0.029 4.029 19 C -0.168 4.168 20 C -0.143 4.143 21 C 0.014 3.986 22 C -0.181 4.181 23 C -0.028 4.028 24 O -0.288 6.288 25 C 0.314 3.686 26 O -0.381 6.381 27 C -0.069 4.069 28 C -0.209 4.209 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.125 0.875 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.157 0.843 44 H 0.179 0.821 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 26.540 -21.552 -4.992 34.552 hybrid contribution -1.534 0.890 -0.214 1.786 sum 25.006 -20.662 -5.206 32.853 Atomic orbital electron populations 1.69739 1.07061 1.29703 1.50172 1.25354 0.95935 1.02388 0.95372 0.85155 0.78872 0.76980 0.79288 1.19190 1.18911 1.18309 1.20687 0.78243 0.96021 1.52849 0.90764 1.83502 1.21061 1.27390 1.83157 1.19694 0.93425 0.84854 0.94932 1.21209 0.99919 0.93479 1.11369 1.20851 0.95108 0.95815 0.96894 1.19249 0.92480 0.95218 1.06911 1.20506 1.04808 0.94406 0.91165 1.21110 0.75794 0.79364 0.92528 1.90736 1.48163 1.52191 1.53271 1.48581 1.59431 1.19780 1.06154 1.22882 1.00962 0.86367 0.92728 1.22910 1.03549 0.96909 0.93481 1.22689 1.02810 0.89553 0.99204 1.21961 0.91788 0.99670 0.85175 1.23322 0.97334 0.99096 0.98351 1.24545 0.84704 0.89473 1.04081 1.87056 1.56813 1.46354 1.38532 1.23945 0.89815 0.75545 0.79258 1.90634 1.39901 1.41738 1.65803 1.20952 1.00528 0.89770 0.95668 1.20544 0.90294 1.00042 1.10024 0.90506 0.88104 0.86182 0.86579 0.83784 0.88929 0.86777 0.92383 0.85431 0.90200 0.84793 0.87510 0.84404 0.90831 0.84263 0.82115 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.96 21.61 0.30 -57.37 16 2 C 0.01 0.45 5.49 84.83 0.47 0.92 16 3 Si 0.98 46.97 28.62 68.60 1.96 48.94 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.40 -24.98 9.95 67.92 0.68 -24.30 16 8 H 0.07 4.91 5.44 -2.91 -0.02 4.89 16 9 O -0.24 -13.87 8.59 -22.77 -0.20 -14.07 16 10 C 0.12 5.94 6.65 22.58 0.15 6.09 16 11 C -0.24 -11.58 9.17 22.39 0.21 -11.37 16 12 C -0.07 -2.64 9.69 22.25 0.22 -2.42 16 13 C -0.14 -4.21 4.38 -19.83 -0.09 -4.29 16 14 C -0.07 -1.34 4.85 29.10 0.14 -1.20 16 15 C 0.52 12.39 7.36 87.65 0.65 13.04 16 16 O -0.57 -19.20 13.06 -3.03 -0.04 -19.24 16 17 N -0.60 -9.92 2.82 -770.04 -2.17 -12.09 16 18 C 0.09 0.60 6.71 86.84 0.58 1.18 16 19 C -0.13 -0.79 7.09 32.06 0.23 -0.56 16 20 C -0.11 -0.78 5.95 31.61 0.19 -0.59 16 21 C 0.10 1.66 0.84 3.37 0.00 1.66 16 22 C -0.14 -1.65 5.96 31.46 0.19 -1.46 16 23 C 0.05 0.87 7.29 72.57 0.53 1.39 16 24 O -0.37 -10.55 11.08 -52.36 -0.58 -11.13 16 25 C 0.47 13.48 6.48 71.22 0.46 13.94 16 26 O -0.50 -17.94 18.00 21.61 0.39 -17.55 16 27 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 28 C -0.19 -7.46 9.99 22.39 0.22 -7.24 16 29 H 0.29 16.21 8.31 -92.71 -0.77 15.44 16 30 H 0.10 5.40 5.64 -2.92 -0.02 5.38 16 31 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.12 1.84 7.80 -2.39 -0.02 1.83 16 33 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.09 0.50 7.50 -2.39 -0.02 0.48 16 35 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 38 H 0.08 0.75 7.82 -2.38 -0.02 0.73 16 39 H 0.13 -0.03 7.68 -2.38 -0.02 -0.05 16 40 H 0.11 1.18 7.92 -2.39 -0.02 1.16 16 41 H 0.14 0.46 7.61 -2.39 -0.02 0.44 16 42 H 0.07 1.91 6.44 -2.39 -0.02 1.89 16 43 H 0.14 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -91.22 371.97 5.72 -85.50 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.02 Total: 13.58 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 5.03 Total: -16.56 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.87 Total: -69.46 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -0.43 Total: -62.00 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.96 Total: 48.94 kcal Total: -91.22 5.72 -85.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186467659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.156 kcal (2) G-P(sol) polarization free energy of solvation -91.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds