Wall clock time and date at job start Wed Apr 1 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47258 * 269.99669 * 3 2 1 5 5 H 1.48505 * 109.46831 * 29.99734 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99517 * 3 2 1 7 7 C 1.38656 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 0.02562 * 7 2 1 9 9 O 1.34827 * 120.00262 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00244 * 185.05739 * 9 7 2 11 11 C 1.38880 * 120.06948 * 354.46273 * 10 9 7 12 12 C 1.38104 * 119.93374 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06600 * 0.02570 * 12 11 10 14 14 C 1.50691 * 119.92911 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47285 * 89.99916 * 14 13 12 16 16 O 1.21278 * 119.99979 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00193 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.47083 * 34.99993 * 18 17 15 20 20 C 1.53004 * 109.47376 * 275.00291 * 18 17 15 21 21 C 1.53001 * 109.46831 * 64.99754 * 20 18 17 22 22 O 1.42903 * 109.46761 * 180.02562 * 21 20 18 23 23 C 1.50701 * 109.47525 * 155.00034 * 18 17 15 24 24 C 1.34507 * 125.79029 * 220.00290 * 23 18 17 25 25 C 1.41393 * 106.83765 * 180.02562 * 24 23 18 26 26 C 1.34511 * 106.84164 * 359.97438 * 25 24 23 27 27 O 1.34303 * 125.78367 * 39.69654 * 23 18 17 28 28 C 1.38304 * 120.13985 * 0.25028 * 13 12 11 29 29 C 1.38102 * 120.06767 * 359.45211 * 28 13 12 30 30 H 0.97000 * 119.99559 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03200 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.96351 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.47441 * 330.00033 * 14 13 12 34 34 H 1.08997 * 109.47466 * 210.00065 * 14 13 12 35 35 H 0.96998 * 120.00163 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47031 * 305.00078 * 20 18 17 37 37 H 1.09001 * 109.47183 * 184.99836 * 20 18 17 38 38 H 1.08992 * 109.47513 * 60.00610 * 21 20 18 39 39 H 1.09001 * 109.47304 * 300.00008 * 21 20 18 40 40 H 0.96709 * 113.99877 * 179.97438 * 22 21 20 41 41 H 1.08001 * 126.58205 * 0.03086 * 24 23 18 42 42 H 1.07998 * 126.57574 * 179.97438 * 25 24 23 43 43 H 1.07998 * 125.78903 * 180.02562 * 26 25 24 44 44 H 1.07995 * 119.96254 * 179.70810 * 28 13 12 45 45 H 1.08004 * 120.03466 * 180.27578 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8535 -4.7987 -0.1997 13 6 5.2299 -4.8615 -0.3197 14 6 5.9141 -6.1991 -0.4364 15 6 6.0217 -6.5833 -1.8896 16 8 5.5860 -5.8436 -2.7462 17 7 6.6030 -7.7485 -2.2373 18 6 6.7070 -8.1223 -3.6500 19 1 6.8708 -7.2281 -4.2513 20 6 5.4117 -8.8051 -4.0937 21 6 4.2574 -7.8032 -4.0240 22 8 3.0475 -8.4411 -4.4379 23 6 7.8636 -9.0707 -3.8349 24 6 8.7315 -9.0619 -4.8624 25 6 9.6462 -10.1158 -4.6349 26 6 9.2827 -10.7052 -3.4817 27 8 8.2058 -10.0643 -2.9986 28 6 5.9800 -3.6997 -0.3272 29 6 5.3554 -2.4721 -0.2262 30 1 -0.4849 0.8401 -0.0004 31 1 2.1488 -3.5261 0.0029 32 1 3.2708 -5.7079 -0.1901 33 1 5.3334 -6.9520 0.0965 34 1 6.9120 -6.1358 -0.0025 35 1 6.9517 -8.3400 -1.5522 36 1 5.2013 -9.6480 -3.4354 37 1 5.5215 -9.1623 -5.1176 38 1 4.4676 -6.9603 -4.6823 39 1 4.1476 -7.4461 -3.0001 40 1 2.2719 -7.8638 -4.4183 41 1 8.7301 -8.3805 -5.7003 42 1 10.4772 -10.3942 -5.2660 43 1 9.7760 -11.5478 -3.0202 44 1 7.0550 -3.7523 -0.4164 45 1 5.9414 -1.5649 -0.2365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187809163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:26 Heat of formation + Delta-G solvation = -71.207919 kcal Electronic energy + Delta-G solvation = -29214.437352 eV Core-core repulsion = 24971.688398 eV Total energy + Delta-G solvation = -4242.748954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.01412 -40.18771 -39.04692 -37.25300 -36.60947 -35.55822 -33.44211 -32.60796 -32.21325 -31.04140 -30.22809 -29.82623 -27.08895 -25.56701 -24.72952 -22.29365 -22.12342 -22.05167 -21.17409 -20.56176 -20.10067 -18.28282 -17.87721 -17.46730 -17.25019 -16.94706 -16.47284 -16.37237 -15.53614 -15.05834 -14.81660 -14.50475 -14.38294 -13.99895 -13.91783 -13.79515 -13.58022 -13.45564 -13.22457 -13.19464 -12.94994 -12.73042 -12.66494 -12.44844 -12.18961 -11.90624 -11.65693 -11.31796 -11.14528 -10.93358 -10.75440 -10.66946 -10.32517 -10.14774 -9.99378 -9.83556 -9.38530 -9.36615 -8.89981 -8.84586 -8.23138 -7.30246 -6.40600 -4.06961 1.27102 2.12719 2.16399 2.22125 2.47105 2.64910 3.04236 3.23049 3.27109 3.41270 3.91329 4.24798 4.32433 4.45649 4.59507 4.68148 4.80186 4.85385 4.86762 4.90633 5.11450 5.11781 5.21493 5.26369 5.33187 5.41223 5.49028 5.54000 5.59655 5.65036 5.65665 5.75784 5.80002 5.90687 6.03103 6.13915 6.17724 6.33677 6.57203 6.71423 6.80021 7.02579 7.22545 7.30924 7.31301 7.55706 7.62591 7.81362 8.05066 8.15666 8.94784 9.57460 10.67038 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.002154 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.816966 B =12997.002885 C =13700.428254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.082 4.082 15 C 0.512 3.488 16 O -0.515 6.515 17 N -0.736 5.736 18 C 0.235 3.765 19 H 0.118 0.882 20 C -0.128 4.128 21 C 0.080 3.920 22 O -0.583 6.583 23 C -0.020 4.020 24 C -0.194 4.194 25 C -0.213 4.213 26 C -0.037 4.037 27 O -0.173 6.173 28 C -0.061 4.061 29 C -0.191 4.191 30 H 0.279 0.721 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.404 0.596 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.383 0.617 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.204 0.796 44 H 0.110 0.890 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.626 -21.424 -5.866 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.163 4.163 14 C -0.121 4.121 15 C 0.300 3.700 16 O -0.389 6.389 17 N -0.390 5.390 18 C 0.130 3.870 19 H 0.135 0.865 20 C -0.167 4.167 21 C 0.003 3.997 22 O -0.389 6.389 23 C -0.070 4.070 24 C -0.214 4.214 25 C -0.232 4.232 26 C -0.104 4.104 27 O -0.069 6.069 28 C -0.079 4.079 29 C -0.210 4.210 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.239 0.761 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.231 0.769 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.221 0.779 44 H 0.128 0.872 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.417 -21.049 -6.266 28.030 hybrid contribution 0.193 0.713 0.102 0.746 sum 17.610 -20.336 -6.165 27.598 Atomic orbital electron populations 1.69649 1.05552 1.28459 1.48100 1.24472 0.95039 0.98835 0.95713 0.86178 0.80306 0.81426 0.78970 1.19885 1.20806 1.18375 1.20766 0.76896 0.96619 1.52130 0.87628 1.83569 1.22620 1.25803 1.80272 1.19125 0.91706 0.85479 0.92674 1.21219 1.01034 0.91794 1.09799 1.20554 0.93227 0.96684 0.97163 1.18669 0.93525 0.92439 1.11666 1.20431 1.02488 0.97128 0.92084 1.21058 0.76684 0.79919 0.92363 1.90753 1.45811 1.50609 1.51764 1.46185 1.62900 1.22631 1.07305 1.19297 0.88785 0.94162 0.84714 0.86467 1.21975 0.92618 0.99119 1.02977 1.22259 0.83873 0.93855 0.99752 1.86348 1.18818 1.43022 1.90694 1.22342 0.99695 0.92673 0.92309 1.21636 0.96598 1.02103 1.01026 1.21862 1.03046 0.98968 0.99322 1.24092 0.89574 1.00040 0.96724 1.83981 1.40191 1.37449 1.45275 1.20399 0.98133 0.91355 0.98032 1.20154 0.91956 0.97747 1.11163 0.91074 0.84988 0.87595 0.88735 0.88735 0.76148 0.90650 0.90054 0.92723 0.92800 0.76932 0.83114 0.83232 0.77909 0.87216 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.48 0.77 -24.76 16 2 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.03 9.95 30.89 0.31 -10.73 16 8 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 9 O -0.22 -5.81 8.59 0.06 0.00 -5.81 16 10 C 0.16 3.79 6.65 -39.10 -0.26 3.53 16 11 C -0.22 -4.76 9.17 -39.39 -0.36 -5.13 16 12 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 13 C -0.16 -2.60 4.38 -104.58 -0.46 -3.06 16 14 C -0.08 -0.92 5.83 -29.04 -0.17 -1.09 16 15 C 0.51 6.24 6.39 -10.99 -0.07 6.17 16 16 O -0.52 -8.28 13.18 5.56 0.07 -8.21 16 17 N -0.74 -6.84 5.02 -54.93 -0.28 -7.12 16 18 C 0.24 2.22 2.71 -69.08 -0.19 2.04 16 19 H 0.12 1.21 7.57 -51.93 -0.39 0.82 16 20 C -0.13 -1.30 5.24 -26.73 -0.14 -1.44 16 21 C 0.08 0.97 5.65 37.16 0.21 1.18 16 22 O -0.58 -7.16 13.66 -35.23 -0.48 -7.64 16 23 C -0.02 -0.17 6.12 -35.63 -0.22 -0.39 16 24 C -0.19 -1.60 10.80 -39.70 -0.43 -2.03 16 25 C -0.21 -1.49 10.91 -39.70 -0.43 -1.92 16 26 C -0.04 -0.24 12.09 29.41 0.36 0.12 16 27 O -0.17 -1.45 10.30 5.69 0.06 -1.39 16 28 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 29 C -0.19 -3.84 9.99 -39.39 -0.39 -4.23 16 30 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.13 3.01 5.64 -52.49 -0.30 2.72 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.40 2.92 8.31 -40.82 -0.34 2.58 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.05 0.72 5.65 -51.93 -0.29 0.43 16 40 H 0.38 3.44 9.12 45.56 0.42 3.86 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.20 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -34.04 384.08 -6.99 -41.03 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.96 Total: 9.26 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -3.11 Total: -18.15 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.50 Total: -31.88 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.35 Total: -23.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.04 -6.99 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187809163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.176 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds