Wall clock time and date at job start Wed Apr 1 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 120.00205 * 2 1 4 4 H 1.48493 * 109.47258 * 269.99669 * 3 2 1 5 5 H 1.48505 * 109.46831 * 29.99734 * 3 2 1 6 6 H 1.48499 * 109.47294 * 149.99517 * 3 2 1 7 7 C 1.38656 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 0.02562 * 7 2 1 9 9 O 1.34827 * 120.00262 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00244 * 185.05739 * 9 7 2 11 11 C 1.38880 * 120.06948 * 354.46273 * 10 9 7 12 12 C 1.38104 * 119.93374 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.06600 * 0.02570 * 12 11 10 14 14 C 1.50691 * 119.92911 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47285 * 89.99916 * 14 13 12 16 16 O 1.21278 * 119.99979 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00119 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00193 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.47083 * 34.99993 * 18 17 15 20 20 C 1.53004 * 109.47376 * 275.00291 * 18 17 15 21 21 C 1.53001 * 109.46831 * 64.99754 * 20 18 17 22 22 O 1.42903 * 109.46761 * 180.02562 * 21 20 18 23 23 C 1.50701 * 109.47525 * 155.00034 * 18 17 15 24 24 C 1.34507 * 125.79029 * 220.00290 * 23 18 17 25 25 C 1.41393 * 106.83765 * 180.02562 * 24 23 18 26 26 C 1.34511 * 106.84164 * 359.97438 * 25 24 23 27 27 O 1.34303 * 125.78367 * 39.69654 * 23 18 17 28 28 C 1.38304 * 120.13985 * 0.25028 * 13 12 11 29 29 C 1.38102 * 120.06767 * 359.45211 * 28 13 12 30 30 H 0.97000 * 119.99559 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.03200 * 359.97438 * 11 10 9 32 32 H 1.07996 * 119.96351 * 180.02562 * 12 11 10 33 33 H 1.09004 * 109.47441 * 330.00033 * 14 13 12 34 34 H 1.08997 * 109.47466 * 210.00065 * 14 13 12 35 35 H 0.96998 * 120.00163 * 0.02562 * 17 15 14 36 36 H 1.09002 * 109.47031 * 305.00078 * 20 18 17 37 37 H 1.09001 * 109.47183 * 184.99836 * 20 18 17 38 38 H 1.08992 * 109.47513 * 60.00610 * 21 20 18 39 39 H 1.09001 * 109.47304 * 300.00008 * 21 20 18 40 40 H 0.96709 * 113.99877 * 179.97438 * 22 21 20 41 41 H 1.08001 * 126.58205 * 0.03086 * 24 23 18 42 42 H 1.07998 * 126.57574 * 179.97438 * 25 24 23 43 43 H 1.07998 * 125.78903 * 180.02562 * 26 25 24 44 44 H 1.07995 * 119.96254 * 179.70810 * 28 13 12 45 45 H 1.08004 * 120.03466 * 180.27578 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1051 11 6 3.2235 -3.5745 -0.0921 12 6 3.8535 -4.7987 -0.1997 13 6 5.2299 -4.8615 -0.3197 14 6 5.9141 -6.1991 -0.4364 15 6 6.0217 -6.5833 -1.8896 16 8 5.5860 -5.8436 -2.7462 17 7 6.6030 -7.7485 -2.2373 18 6 6.7070 -8.1223 -3.6500 19 1 6.8708 -7.2281 -4.2513 20 6 5.4117 -8.8051 -4.0937 21 6 4.2574 -7.8032 -4.0240 22 8 3.0475 -8.4411 -4.4379 23 6 7.8636 -9.0707 -3.8349 24 6 8.7315 -9.0619 -4.8624 25 6 9.6462 -10.1158 -4.6349 26 6 9.2827 -10.7052 -3.4817 27 8 8.2058 -10.0643 -2.9986 28 6 5.9800 -3.6997 -0.3272 29 6 5.3554 -2.4721 -0.2262 30 1 -0.4849 0.8401 -0.0004 31 1 2.1488 -3.5261 0.0029 32 1 3.2708 -5.7079 -0.1901 33 1 5.3334 -6.9520 0.0965 34 1 6.9120 -6.1358 -0.0025 35 1 6.9517 -8.3400 -1.5522 36 1 5.2013 -9.6480 -3.4354 37 1 5.5215 -9.1623 -5.1176 38 1 4.4676 -6.9603 -4.6823 39 1 4.1476 -7.4461 -3.0001 40 1 2.2719 -7.8638 -4.4183 41 1 8.7301 -8.3805 -5.7003 42 1 10.4772 -10.3942 -5.2660 43 1 9.7760 -11.5478 -3.0202 44 1 7.0550 -3.7523 -0.4164 45 1 5.9414 -1.5649 -0.2365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187809163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:25 Heat of formation + Delta-G solvation = -96.145367 kcal Electronic energy + Delta-G solvation = -29215.518721 eV Core-core repulsion = 24971.688398 eV Total energy + Delta-G solvation = -4243.830323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.56910 -41.27359 -40.61972 -38.54471 -37.88885 -36.48390 -34.51854 -34.02460 -33.39597 -32.20955 -31.78200 -30.49675 -28.49004 -26.99063 -26.01273 -23.69869 -23.05423 -22.86408 -22.29232 -21.29760 -21.19186 -19.81694 -19.15740 -18.90442 -18.36546 -17.85328 -17.24949 -16.97297 -16.71024 -16.56901 -15.95126 -15.82787 -15.69527 -15.52670 -15.31900 -15.10563 -14.75951 -14.39692 -14.32587 -14.26182 -14.07987 -13.84199 -13.76488 -13.53485 -13.35974 -13.04600 -12.87043 -12.65324 -12.51078 -12.40528 -12.31104 -12.04290 -11.92405 -11.27156 -11.01841 -10.93403 -10.86581 -10.81054 -10.23708 -9.77444 -9.45933 -8.97115 -8.50230 -6.22488 0.59992 0.60817 0.72426 1.30195 1.34729 1.51094 1.64688 1.68392 1.96198 2.18008 2.27701 2.78809 3.06442 3.15962 3.19435 3.64066 3.84126 3.92785 4.03399 4.04910 4.12346 4.14126 4.17876 4.24967 4.37525 4.46204 4.47890 4.58876 4.61898 4.70974 4.82846 4.86452 4.87314 4.99171 4.99916 5.03602 5.16326 5.26618 5.33628 5.38433 5.57525 5.58421 5.75215 5.80847 5.91946 6.15487 6.25525 6.53357 6.72539 6.84173 7.27178 7.59398 8.61459 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.002154 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.816966 B =12997.002885 C =13700.428254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.398 4.398 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.237 4.237 12 C -0.063 4.063 13 C -0.135 4.135 14 C -0.081 4.081 15 C 0.515 3.485 16 O -0.561 6.561 17 N -0.718 5.718 18 C 0.243 3.757 19 H 0.107 0.893 20 C -0.120 4.120 21 C 0.083 3.917 22 O -0.594 6.594 23 C -0.037 4.037 24 C -0.202 4.202 25 C -0.229 4.229 26 C -0.029 4.029 27 O -0.181 6.181 28 C -0.058 4.058 29 C -0.194 4.194 30 H 0.284 0.716 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.042 0.958 40 H 0.395 0.605 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.240 0.760 44 H 0.153 0.847 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.425 -23.977 -5.664 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.257 4.257 12 C -0.081 4.081 13 C -0.136 4.136 14 C -0.120 4.120 15 C 0.304 3.696 16 O -0.439 6.439 17 N -0.373 5.373 18 C 0.137 3.863 19 H 0.124 0.876 20 C -0.159 4.159 21 C 0.006 3.994 22 O -0.402 6.402 23 C -0.087 4.087 24 C -0.222 4.222 25 C -0.247 4.247 26 C -0.096 4.096 27 O -0.078 6.078 28 C -0.076 4.076 29 C -0.213 4.213 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.244 0.756 41 H 0.174 0.826 42 H 0.185 0.815 43 H 0.256 0.744 44 H 0.170 0.830 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.255 -23.672 -6.051 32.384 hybrid contribution -0.760 1.099 -0.025 1.336 sum 20.494 -22.573 -6.076 31.088 Atomic orbital electron populations 1.69733 1.06854 1.29549 1.50304 1.25297 0.95932 1.02181 0.95621 0.85207 0.78822 0.77409 0.79199 1.19276 1.19026 1.18675 1.20700 0.78158 0.96075 1.52523 0.90265 1.83509 1.21196 1.27532 1.83226 1.19687 0.93266 0.85075 0.95070 1.21238 1.00026 0.93322 1.11087 1.20881 0.94703 0.96023 0.96467 1.19240 0.92744 0.94916 1.06666 1.20553 1.04607 0.94722 0.92112 1.21097 0.76214 0.80140 0.92195 1.90768 1.47962 1.52186 1.52953 1.45986 1.61628 1.21848 1.07792 1.19114 0.88804 0.93953 0.84389 0.87568 1.21916 0.92185 0.98521 1.03288 1.22208 0.84524 0.94071 0.98610 1.86324 1.19468 1.43774 1.90664 1.22109 1.00014 0.93443 0.93108 1.21918 0.96751 1.02535 1.01006 1.22172 1.03606 0.98837 1.00131 1.24858 0.88393 0.99996 0.96373 1.83971 1.40951 1.37454 1.45400 1.20930 1.00330 0.90202 0.96100 1.20501 0.90562 0.99826 1.10379 0.90599 0.87664 0.85024 0.85695 0.84846 0.74521 0.90511 0.89761 0.94126 0.93946 0.75593 0.82622 0.81469 0.74399 0.82988 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.96 21.61 0.30 -55.93 16 2 C 0.01 0.46 5.49 84.83 0.47 0.93 16 3 Si 0.97 46.55 28.62 68.60 1.96 48.51 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.40 -24.13 9.95 67.92 0.68 -23.45 16 8 H 0.08 5.03 5.44 -2.91 -0.02 5.02 16 9 O -0.25 -13.85 8.59 -22.69 -0.19 -14.05 16 10 C 0.12 5.71 6.65 22.58 0.15 5.86 16 11 C -0.24 -10.78 9.17 22.39 0.21 -10.57 16 12 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 13 C -0.13 -3.90 4.38 -19.84 -0.09 -3.99 16 14 C -0.08 -1.43 5.83 29.10 0.17 -1.26 16 15 C 0.52 10.90 6.39 87.66 0.56 11.46 16 16 O -0.56 -17.10 13.18 -3.02 -0.04 -17.14 16 17 N -0.72 -11.10 5.02 -446.09 -2.24 -13.34 16 18 C 0.24 4.14 2.71 44.25 0.12 4.26 16 19 H 0.11 2.09 7.57 -2.39 -0.02 2.07 16 20 C -0.12 -2.29 5.24 30.60 0.16 -2.13 16 21 C 0.08 1.99 5.65 71.98 0.41 2.39 16 22 O -0.59 -14.29 13.66 -148.98 -2.04 -16.33 16 23 C -0.04 -0.56 6.12 24.83 0.15 -0.41 16 24 C -0.20 -2.93 10.80 22.19 0.24 -2.69 16 25 C -0.23 -2.54 10.91 22.19 0.24 -2.30 16 26 C -0.03 -0.27 12.09 66.97 0.81 0.54 16 27 O -0.18 -2.48 10.30 -2.55 -0.03 -2.51 16 28 C -0.06 -1.78 9.69 22.25 0.22 -1.57 16 29 C -0.19 -7.64 9.99 22.39 0.22 -7.41 16 30 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.11 5.26 5.64 -2.91 -0.02 5.25 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 35 H 0.42 4.31 8.31 -92.71 -0.77 3.54 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.07 7.85 -2.39 -0.02 1.05 16 39 H 0.04 1.10 5.65 -2.39 -0.01 1.09 16 40 H 0.39 7.04 9.12 -74.05 -0.68 6.37 16 41 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.24 0.21 8.06 -2.91 -0.02 0.18 16 44 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -79.43 384.08 2.26 -77.18 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.40 Total: 25.93 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.93 Total: -32.33 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.94 Total: -69.27 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.30 Total: -50.02 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.96 Total: 48.51 kcal Total: -79.43 2.26 -77.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187809163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.969 kcal (2) G-P(sol) polarization free energy of solvation -79.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds