Wall clock time and date at job start Wed Apr 1 2020 04:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34508 * 124.44719 * 2 1 4 4 O 1.21425 * 125.72393 * 0.02562 * 3 2 1 5 5 C 1.48063 * 108.54991 * 180.02562 * 3 2 1 6 6 C 1.38588 * 134.10056 * 179.97438 * 5 3 2 7 7 C 1.38440 * 119.90410 * 179.71575 * 6 5 3 8 8 C 1.39518 * 120.30541 * 0.30174 * 7 6 5 9 9 C 1.47905 * 119.93177 * 179.97438 * 8 7 6 10 10 O 1.21446 * 119.99632 * 179.97438 * 9 8 7 11 11 O 1.34686 * 119.99947 * 0.02562 * 9 8 7 12 12 C 1.45204 * 117.00010 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47207 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47263 * 300.00528 * 13 12 11 15 15 C 1.53001 * 109.46893 * 60.00313 * 13 12 11 16 16 C 1.52998 * 109.47032 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.47017 * 180.02562 * 16 13 12 18 18 H 1.08004 * 120.00027 * 0.02562 * 17 16 13 19 19 C 1.37880 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31519 * 120.00100 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99799 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47261 * 89.99964 * 21 19 17 23 23 H 1.48498 * 109.47196 * 210.00245 * 21 19 17 24 24 H 1.48503 * 109.47032 * 330.00167 * 21 19 17 25 25 C 1.39814 * 120.13540 * 0.02562 * 8 7 6 26 26 C 1.38424 * 119.61791 * 359.97401 * 25 8 7 27 27 C 1.34519 * 124.44387 * 180.69535 * 2 1 3 28 28 O 1.21451 * 125.68334 * 359.37680 * 27 2 1 29 29 H 1.08997 * 109.46567 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46893 * 119.97767 * 1 2 3 31 31 H 1.08998 * 109.46918 * 239.97666 * 1 2 3 32 32 H 1.08002 * 120.05215 * 359.97438 * 6 5 3 33 33 H 1.08004 * 119.85237 * 180.27995 * 7 6 5 34 34 H 1.09000 * 109.47279 * 300.00105 * 12 11 9 35 35 H 1.09000 * 109.46844 * 60.00579 * 12 11 9 36 36 H 1.08995 * 109.47394 * 59.99579 * 14 13 12 37 37 H 1.09001 * 109.47143 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.46920 * 299.99638 * 14 13 12 39 39 H 1.09000 * 109.47210 * 59.99985 * 15 13 12 40 40 H 1.08999 * 109.47167 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47149 * 299.99507 * 15 13 12 42 42 H 1.09000 * 109.47482 * 300.00266 * 16 13 12 43 43 H 1.09005 * 109.47017 * 60.00443 * 16 13 12 44 44 H 0.96996 * 119.99273 * 179.97438 * 20 19 17 45 45 H 1.07998 * 120.19130 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1092 0.0000 4 8 1.8140 2.2515 0.0004 5 6 3.6499 0.7037 -0.0006 6 6 4.8501 1.3966 -0.0013 7 6 6.0478 0.7025 0.0041 8 6 6.0530 -0.6927 0.0041 9 6 7.3375 -1.4259 0.0094 10 8 7.3434 -2.6404 0.0098 11 8 8.5006 -0.7468 0.0148 12 6 9.7222 -1.5316 0.0204 13 6 10.9310 -0.5937 0.0254 14 6 10.8972 0.2885 -1.2241 15 6 10.8863 0.2891 1.2743 16 6 12.2182 -1.4207 0.0320 17 6 13.4088 -0.4969 0.0376 18 1 13.2620 0.5732 0.0370 19 6 14.6854 -1.0176 0.0434 20 7 15.7245 -0.2113 0.0478 21 14 14.9392 -2.8682 0.0452 22 1 15.0127 -3.3591 -1.3544 23 1 16.2046 -3.1937 0.7510 24 1 13.8021 -3.5231 0.7403 25 6 4.8465 -1.3991 -0.0021 26 6 3.6481 -0.7062 -0.0076 27 6 2.2259 -1.1093 -0.0135 28 8 1.8131 -2.2515 -0.0166 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5135 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 4.8510 2.4767 -0.0019 33 1 6.9827 1.2434 0.0082 34 1 9.7461 -2.1604 0.9104 35 1 9.7543 -2.1601 -0.8696 36 1 9.9802 0.8777 -1.2283 37 1 11.7587 0.9564 -1.2208 38 1 10.9291 -0.3404 -2.1139 39 1 10.9103 -0.3394 2.1645 40 1 11.7472 0.9576 1.2777 41 1 9.9693 0.8783 1.2701 42 1 12.2420 -2.0489 0.9224 43 1 12.2503 -2.0499 -0.8576 44 1 16.6226 -0.5778 0.0523 45 1 4.8494 -2.4791 -0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195065794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:10 Heat of formation + Delta-G solvation = -127.054157 kcal Electronic energy + Delta-G solvation = -29096.527727 eV Core-core repulsion = 24851.357099 eV Total energy + Delta-G solvation = -4245.170629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.51300 -41.69014 -39.92175 -39.62925 -38.63567 -37.08744 -36.94817 -34.39764 -33.60591 -32.46474 -30.00270 -29.19913 -27.92456 -27.85710 -26.60486 -25.26494 -24.20073 -23.83865 -22.13061 -21.17374 -19.90095 -19.42750 -18.87765 -18.63369 -18.01276 -17.96204 -17.81526 -17.50282 -16.69965 -16.32252 -16.18612 -15.81326 -15.44032 -15.38754 -15.29568 -15.22391 -14.85387 -14.53143 -14.29133 -14.19714 -14.15080 -13.79780 -13.63260 -13.57237 -13.03193 -13.00248 -12.84124 -12.64980 -12.24784 -12.13193 -11.97257 -11.83232 -11.80099 -11.73072 -11.59828 -11.33277 -11.19102 -11.07104 -10.91507 -10.69785 -10.54025 -10.45071 -8.21314 -6.21862 -1.40269 -0.42547 0.46496 1.10878 1.37018 1.39755 1.39810 1.43204 1.49097 1.70146 2.39134 2.39643 2.41186 2.99502 3.13806 3.34288 3.38449 3.74865 3.87300 3.92756 3.96741 4.02656 4.20712 4.21810 4.29805 4.37662 4.45480 4.58763 4.60979 4.65252 4.69982 4.70564 4.77364 4.93800 5.03111 5.05219 5.16470 5.27431 5.28308 5.38313 5.41316 5.42116 5.44295 5.57973 5.69439 5.77992 5.92046 6.38290 6.40939 6.55734 6.85357 7.40489 8.94095 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.001975 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.977265 B =14170.687983 C =14951.971729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.578 5.578 3 C 0.581 3.419 4 O -0.475 6.475 5 C -0.110 4.110 6 C -0.039 4.039 7 C -0.016 4.016 8 C -0.104 4.104 9 C 0.506 3.494 10 O -0.529 6.529 11 O -0.333 6.333 12 C 0.086 3.914 13 C -0.048 4.048 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.005 4.005 17 C -0.502 4.502 18 H 0.053 0.947 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.934 3.066 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.250 1.250 25 C 0.014 3.986 26 C -0.162 4.162 27 C 0.582 3.418 28 O -0.485 6.485 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.183 0.817 33 H 0.183 0.817 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.263 0.737 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.593 3.149 -0.115 30.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.370 3.630 4 O -0.347 6.347 5 C -0.114 4.114 6 C -0.057 4.057 7 C -0.033 4.033 8 C -0.106 4.106 9 C 0.352 3.648 10 O -0.420 6.420 11 O -0.249 6.249 12 C 0.013 3.987 13 C -0.048 4.048 14 C -0.181 4.181 15 C -0.181 4.181 16 C -0.042 4.042 17 C -0.540 4.540 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.759 3.241 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.173 1.173 25 C -0.005 4.005 26 C -0.166 4.166 27 C 0.371 3.629 28 O -0.358 6.358 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.201 0.799 33 H 0.200 0.800 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -30.939 2.792 -0.106 31.065 hybrid contribution 0.866 -1.239 -0.023 1.512 sum -30.073 1.552 -0.129 30.114 Atomic orbital electron populations 1.22206 0.73309 1.06089 1.05115 1.46486 1.10582 1.07619 1.67284 1.18420 0.86644 0.83872 0.74065 1.90826 1.79531 1.19792 1.44563 1.20873 0.94400 0.93908 1.02226 1.21122 0.87811 1.02791 0.93978 1.22149 1.00582 0.91630 0.88984 1.19176 0.89227 0.94671 1.07479 1.21312 0.85234 0.85790 0.72499 1.90860 1.88511 1.16019 1.46611 1.86473 1.14309 1.41029 1.83059 1.23267 0.79794 0.93286 1.02382 1.20455 0.91132 0.95536 0.97674 1.21685 1.01534 0.99229 0.95642 1.21683 1.01532 0.99211 0.95651 1.19592 0.92710 0.95497 0.96449 1.21319 0.89999 0.94239 1.48415 0.92907 1.25843 0.96146 1.02088 0.95090 1.70041 0.98834 1.36765 1.53499 0.85900 0.77965 0.81380 0.78850 1.19683 1.21597 1.17324 1.20667 0.88227 1.01495 0.90079 1.20195 0.93243 0.94749 1.08377 1.18331 0.86585 0.83918 0.74024 1.90828 1.79681 1.20324 1.44923 0.87466 0.89088 0.89059 0.79925 0.79958 0.91255 0.91194 0.90827 0.93737 0.93645 0.93676 0.93729 0.90834 0.96370 0.96515 0.92856 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.87 127.77 1.39 1.99 16 2 N -0.58 -8.19 3.02 -786.14 -2.38 -10.57 16 3 C 0.58 8.75 8.03 86.89 0.70 9.45 16 4 O -0.48 -8.90 17.43 -3.48 -0.06 -8.96 16 5 C -0.11 -1.46 6.41 -19.91 -0.13 -1.58 16 6 C -0.04 -0.35 10.08 22.40 0.23 -0.12 16 7 C -0.02 -0.17 9.61 22.63 0.22 0.05 16 8 C -0.10 -1.74 5.88 -20.03 -0.12 -1.86 16 9 C 0.51 11.86 7.90 70.38 0.56 12.41 16 10 O -0.53 -15.74 16.13 20.01 0.32 -15.42 16 11 O -0.33 -8.01 8.10 -55.95 -0.45 -8.47 16 12 C 0.09 2.52 4.33 71.98 0.31 2.83 16 13 C -0.05 -1.63 0.61 -52.18 -0.03 -1.67 16 14 C -0.12 -4.02 8.08 71.98 0.58 -3.44 16 15 C -0.12 -4.02 8.08 71.98 0.58 -3.44 16 16 C -0.01 -0.22 3.11 29.85 0.09 -0.12 16 17 C -0.50 -26.58 8.20 25.60 0.21 -26.37 16 18 H 0.05 3.03 5.92 -2.91 -0.02 3.01 16 19 C 0.00 0.26 5.47 84.65 0.46 0.72 16 20 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 21 Si 0.93 43.23 27.47 68.60 1.88 45.11 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 25 C 0.01 0.24 9.63 22.70 0.22 0.46 16 26 C -0.16 -2.58 6.39 -20.02 -0.13 -2.71 16 27 C 0.58 10.30 8.02 86.82 0.70 10.99 16 28 O -0.48 -11.18 17.80 -3.56 -0.06 -11.25 16 29 H 0.11 0.70 7.58 -2.39 -0.02 0.68 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.18 1.31 7.58 -2.91 -0.02 1.29 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 37 H 0.04 1.69 6.62 -2.39 -0.02 1.67 16 38 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 41 H 0.07 1.90 7.68 -2.39 -0.02 1.88 16 42 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 43 H 0.02 0.71 7.57 -2.38 -0.02 0.69 16 44 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.15 2.75 7.65 -2.91 -0.02 2.72 16 Total: -1.00 -70.73 382.66 6.36 -64.37 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.97 Total: 4.95 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.84 Total: -2.40 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -2.08 Total: -67.94 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.25 Total: -44.09 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Total: -70.73 6.36 -64.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195065794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.686 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds