Wall clock time and date at job start Wed Apr 1 2020 03:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 110.30414 * 2 1 4 4 O 1.20834 * 119.99694 * 237.82776 * 3 2 1 5 5 O 1.34226 * 120.00449 * 57.54728 * 3 2 1 6 6 C 1.54284 * 110.34307 * 237.82099 * 2 1 3 7 7 C 1.54382 * 104.96333 * 241.02332 * 6 2 1 8 8 N 1.48148 * 104.61618 * 23.86667 * 7 6 2 9 9 C 1.34778 * 127.83648 * 140.39348 * 8 7 6 10 10 O 1.21724 * 119.99730 * 179.97438 * 9 8 7 11 11 C 1.46249 * 120.00161 * 359.97438 * 9 8 7 12 12 C 1.35029 * 120.00052 * 180.02562 * 11 9 8 13 13 C 1.46958 * 119.99940 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.09945 * 359.72901 * 13 12 11 15 15 C 1.37600 * 119.89116 * 179.69925 * 14 13 12 16 16 C 1.39176 * 120.10546 * 0.59375 * 15 14 13 17 17 O 1.35569 * 119.90033 * 179.70030 * 16 15 14 18 18 C 1.34781 * 117.00286 * 174.42269 * 17 16 15 19 19 H 1.08006 * 119.99565 * 5.05783 * 18 17 16 20 20 C 1.38712 * 120.00315 * 185.05655 * 18 17 16 21 21 N 1.31515 * 120.00255 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00044 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47496 * 89.99848 * 22 20 18 24 24 H 1.48503 * 109.46962 * 210.00174 * 22 20 18 25 25 H 1.48506 * 109.46979 * 329.99572 * 22 20 18 26 26 C 1.39174 * 120.20000 * 359.68002 * 16 15 14 27 27 C 1.37599 * 120.10305 * 0.02562 * 26 16 15 28 28 C 1.48145 * 104.32631 * 320.41654 * 8 7 6 29 29 H 1.09005 * 109.47269 * 60.70177 * 1 2 3 30 30 H 1.09001 * 109.47382 * 180.70332 * 1 2 3 31 31 H 1.09000 * 109.47787 * 300.70077 * 1 2 3 32 32 H 0.96695 * 117.00317 * 180.28014 * 5 3 2 33 33 H 1.09007 * 110.34287 * 359.89729 * 6 2 1 34 34 H 1.09003 * 110.34336 * 122.15123 * 6 2 1 35 35 H 1.09001 * 110.40717 * 142.65225 * 7 6 2 36 36 H 1.09002 * 110.40646 * 264.96948 * 7 6 2 37 37 H 1.07996 * 120.00353 * 359.97438 * 11 9 8 38 38 H 1.07996 * 119.99595 * 359.97438 * 12 11 9 39 39 H 1.07999 * 120.05321 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.94739 * 180.31604 * 15 14 13 41 41 H 0.96995 * 120.00195 * 180.02562 * 21 20 18 42 42 H 1.08002 * 119.94476 * 180.02562 * 26 16 15 43 43 H 1.07999 * 120.04730 * 179.97438 * 27 26 16 44 44 H 1.09006 * 110.40713 * 280.80351 * 28 8 7 45 45 H 1.08998 * 110.41052 * 158.36752 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4133 0.0000 4 8 2.7851 1.7866 -0.8858 5 8 1.7008 2.2593 0.9809 6 6 2.0663 -0.7704 -1.2244 7 6 2.8824 -1.9400 -0.6333 8 7 2.3177 -2.1429 0.7213 9 6 2.0831 -3.3101 1.3529 10 8 1.6113 -3.3108 2.4750 11 6 2.3953 -4.5759 0.6901 12 6 2.1597 -5.7453 1.3227 13 6 2.4729 -7.0172 0.6565 14 6 3.0104 -7.0190 -0.6366 15 6 3.3078 -8.2122 -1.2539 16 6 3.0637 -9.4163 -0.6002 17 8 3.3527 -10.5897 -1.2147 18 6 3.2024 -11.7145 -0.4877 19 1 2.7882 -11.6624 0.5084 20 6 3.5798 -12.9392 -1.0186 21 7 3.4327 -14.0369 -0.3093 22 14 4.2969 -13.0294 -2.7412 23 1 5.7732 -12.8853 -2.6710 24 1 3.9559 -14.3396 -3.3514 25 1 3.7316 -11.9349 -3.5706 26 6 2.5243 -9.4196 0.6828 27 6 2.2294 -8.2311 1.3104 28 6 2.0689 -0.7717 1.2238 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3635 0.5247 0.8836 32 1 2.0580 3.1567 0.9359 33 1 1.2397 -1.1504 -1.8249 34 1 2.7080 -0.1266 -1.8259 35 1 2.7524 -2.8378 -1.2376 36 1 3.9376 -1.6740 -0.5711 37 1 2.8134 -4.5753 -0.3056 38 1 1.7412 -5.7459 2.3182 39 1 3.1953 -6.0852 -1.1467 40 1 3.7271 -8.2144 -2.2493 41 1 3.6969 -14.8932 -0.6805 42 1 2.3370 -10.3564 1.1865 43 1 1.8104 -8.2347 2.3059 44 1 2.9968 -0.3224 1.5779 45 1 1.3252 -0.7879 2.0205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237779150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:46 Heat of formation + Delta-G solvation = -104.987805 kcal Electronic energy + Delta-G solvation = -28455.911669 eV Core-core repulsion = 24211.697909 eV Total energy + Delta-G solvation = -4244.213760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36911 -39.81442 -39.34313 -37.84750 -37.02314 -36.59038 -33.52567 -33.13547 -32.46690 -30.55654 -30.08151 -28.78463 -27.18464 -25.69729 -24.89853 -23.63195 -22.72336 -22.23946 -20.38372 -20.19010 -18.84657 -18.41778 -18.07826 -17.50557 -17.46338 -17.04741 -16.21057 -15.72687 -15.40632 -15.01907 -14.84634 -14.42055 -14.13333 -14.07778 -14.03093 -13.91893 -13.80161 -13.56212 -13.03787 -12.87244 -12.81218 -12.61979 -12.43283 -12.37117 -12.07957 -11.93061 -11.90674 -11.68459 -11.52974 -11.31359 -11.21533 -11.03858 -10.93793 -10.77878 -10.29479 -9.90694 -9.69311 -9.56996 -9.03471 -8.91091 -8.49423 -7.27092 -6.62156 -4.25950 0.93580 1.64774 2.01239 2.37132 2.42716 2.84926 3.10473 3.14516 3.27508 3.42002 3.77977 4.04467 4.07221 4.25086 4.40517 4.60536 4.67596 4.72292 4.73631 4.81117 4.92137 5.06915 5.15956 5.20437 5.24846 5.30222 5.39361 5.40377 5.45485 5.53993 5.55952 5.57374 5.68019 5.88711 5.93330 5.98645 5.99387 6.27160 6.41874 6.49800 6.64718 6.90211 7.06439 7.13200 7.35520 7.38829 7.39461 7.60732 7.82134 8.14996 8.71011 9.30997 10.43996 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.001708 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.131794 B =16393.033596 C =17119.163913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.495 3.505 4 O -0.509 6.509 5 O -0.510 6.510 6 C -0.129 4.129 7 C 0.101 3.899 8 N -0.625 5.625 9 C 0.580 3.420 10 O -0.553 6.553 11 C -0.277 4.277 12 C 0.039 3.961 13 C -0.191 4.191 14 C -0.044 4.044 15 C -0.199 4.199 16 C 0.174 3.826 17 O -0.202 6.202 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.866 5.866 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.036 4.036 28 C 0.124 3.876 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.283 0.717 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.072 0.928 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 27.852 -0.863 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C 0.336 3.664 4 O -0.397 6.397 5 O -0.321 6.321 6 C -0.167 4.167 7 C -0.022 4.022 8 N -0.359 5.359 9 C 0.375 3.625 10 O -0.433 6.433 11 C -0.297 4.297 12 C 0.019 3.981 13 C -0.192 4.192 14 C -0.063 4.063 15 C -0.219 4.219 16 C 0.119 3.881 17 O -0.104 6.104 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.139 4.139 21 N -0.502 5.502 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.054 4.054 28 C 0.000 4.000 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.271 0.729 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.357 27.080 -0.659 27.295 hybrid contribution 0.603 0.436 -0.702 1.023 sum -2.754 27.516 -1.360 27.687 Atomic orbital electron populations 1.21870 0.90385 1.03937 1.03157 1.21437 0.98741 0.87883 0.99032 1.23106 0.77079 0.87995 0.78221 1.90715 1.34673 1.77590 1.36698 1.84542 1.70591 1.27190 1.49826 1.22791 1.01399 0.96738 0.95757 1.22450 0.97597 0.98878 0.83305 1.48774 1.64584 1.04867 1.17711 1.18055 0.76851 0.82714 0.84858 1.90802 1.46014 1.87147 1.19298 1.22386 1.13879 0.90989 1.02481 1.22319 0.87545 0.90860 0.97355 1.18506 1.12223 0.92059 0.96369 1.20870 0.95317 0.96612 0.93455 1.20146 1.10077 0.89943 1.01697 1.19365 0.91706 0.86176 0.90842 1.83503 1.74371 1.12554 1.40003 1.20881 1.43289 0.81754 1.00747 0.87173 1.24543 0.95942 0.93589 0.99853 1.69616 1.44316 0.98541 1.37688 0.86157 0.79844 0.78184 0.82640 1.19626 1.20503 1.18197 1.21224 1.07980 0.99069 0.96623 1.21044 0.94952 0.91253 0.98166 1.22134 1.01309 0.81793 0.94760 0.91670 0.90485 0.90891 0.72948 0.89341 0.87847 0.89090 0.90637 0.85758 0.85716 0.86309 0.86100 0.90632 0.84481 0.86491 0.90951 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.16 37.16 0.30 -0.54 16 2 C -0.07 -0.49 0.97 -154.26 -0.15 -0.64 16 3 C 0.49 3.70 6.85 36.00 0.25 3.94 16 4 O -0.51 -5.10 16.01 -18.76 -0.30 -5.40 16 5 O -0.51 -2.69 13.30 -39.25 -0.52 -3.21 16 6 C -0.13 -0.86 6.24 -25.33 -0.16 -1.02 16 7 C 0.10 0.76 6.87 -2.41 -0.02 0.74 16 8 N -0.62 -6.46 3.32 -171.00 -0.57 -7.03 16 9 C 0.58 7.85 7.83 -13.04 -0.10 7.75 16 10 O -0.55 -9.32 16.50 5.17 0.09 -9.24 16 11 C -0.28 -3.54 8.94 -37.51 -0.34 -3.88 16 12 C 0.04 0.56 9.45 -37.19 -0.35 0.20 16 13 C -0.19 -3.03 5.87 -105.03 -0.62 -3.65 16 14 C -0.04 -0.69 9.40 -39.14 -0.37 -1.06 16 15 C -0.20 -3.62 9.97 -39.47 -0.39 -4.01 16 16 C 0.17 3.73 6.66 -38.89 -0.26 3.47 16 17 O -0.20 -4.98 8.57 0.74 0.01 -4.97 16 18 C -0.39 -10.40 9.94 30.91 0.31 -10.09 16 19 H 0.11 2.98 5.41 -52.48 -0.28 2.69 16 20 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -23.73 13.96 55.48 0.77 -22.95 16 22 Si 0.91 20.42 28.62 -169.99 -4.86 15.56 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 26 C -0.23 -4.62 9.14 -39.47 -0.36 -4.98 16 27 C -0.04 -0.61 9.78 -39.15 -0.38 -0.99 16 28 C 0.12 1.09 6.13 -2.41 -0.01 1.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.41 0.49 9.10 45.56 0.41 0.90 16 33 H 0.09 0.51 7.71 -51.92 -0.40 0.11 16 34 H 0.10 0.74 6.47 -51.93 -0.34 0.40 16 35 H 0.09 0.60 6.69 -51.93 -0.35 0.25 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 1.34 4.72 -52.49 -0.25 1.10 16 38 H 0.13 1.78 7.52 -52.49 -0.39 1.38 16 39 H 0.12 1.46 6.16 -52.49 -0.32 1.14 16 40 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 41 H 0.28 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.14 2.88 5.62 -52.49 -0.29 2.59 16 43 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.07 0.60 7.86 -51.93 -0.41 0.19 16 45 H 0.10 0.94 7.60 -51.93 -0.39 0.54 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -32.03 381.13 -7.08 -39.10 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.69 Total: 4.42 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.75 Total: -12.02 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.21 Total: -29.98 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.73 Total: -22.82 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.86 Total: 15.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.03 -7.08 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237779150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.883 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds