Wall clock time and date at job start Wed Apr 1 2020 03:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 110.30414 * 2 1 4 4 O 1.20834 * 119.99694 * 237.82776 * 3 2 1 5 5 O 1.34226 * 120.00449 * 57.54728 * 3 2 1 6 6 C 1.54284 * 110.34307 * 237.82099 * 2 1 3 7 7 C 1.54382 * 104.96333 * 241.02332 * 6 2 1 8 8 N 1.48148 * 104.61618 * 23.86667 * 7 6 2 9 9 C 1.34778 * 127.83648 * 140.39348 * 8 7 6 10 10 O 1.21724 * 119.99730 * 179.97438 * 9 8 7 11 11 C 1.46249 * 120.00161 * 359.97438 * 9 8 7 12 12 C 1.35029 * 120.00052 * 180.02562 * 11 9 8 13 13 C 1.46958 * 119.99940 * 179.97438 * 12 11 9 14 14 C 1.40026 * 120.09945 * 359.72901 * 13 12 11 15 15 C 1.37600 * 119.89116 * 179.69925 * 14 13 12 16 16 C 1.39176 * 120.10546 * 0.59375 * 15 14 13 17 17 O 1.35569 * 119.90033 * 179.70030 * 16 15 14 18 18 C 1.34781 * 117.00286 * 174.42269 * 17 16 15 19 19 H 1.08006 * 119.99565 * 5.05783 * 18 17 16 20 20 C 1.38712 * 120.00315 * 185.05655 * 18 17 16 21 21 N 1.31515 * 120.00255 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00044 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47496 * 89.99848 * 22 20 18 24 24 H 1.48503 * 109.46962 * 210.00174 * 22 20 18 25 25 H 1.48506 * 109.46979 * 329.99572 * 22 20 18 26 26 C 1.39174 * 120.20000 * 359.68002 * 16 15 14 27 27 C 1.37599 * 120.10305 * 0.02562 * 26 16 15 28 28 C 1.48145 * 104.32631 * 320.41654 * 8 7 6 29 29 H 1.09005 * 109.47269 * 60.70177 * 1 2 3 30 30 H 1.09001 * 109.47382 * 180.70332 * 1 2 3 31 31 H 1.09000 * 109.47787 * 300.70077 * 1 2 3 32 32 H 0.96695 * 117.00317 * 180.28014 * 5 3 2 33 33 H 1.09007 * 110.34287 * 359.89729 * 6 2 1 34 34 H 1.09003 * 110.34336 * 122.15123 * 6 2 1 35 35 H 1.09001 * 110.40717 * 142.65225 * 7 6 2 36 36 H 1.09002 * 110.40646 * 264.96948 * 7 6 2 37 37 H 1.07996 * 120.00353 * 359.97438 * 11 9 8 38 38 H 1.07996 * 119.99595 * 359.97438 * 12 11 9 39 39 H 1.07999 * 120.05321 * 359.97438 * 14 13 12 40 40 H 1.08007 * 119.94739 * 180.31604 * 15 14 13 41 41 H 0.96995 * 120.00195 * 180.02562 * 21 20 18 42 42 H 1.08002 * 119.94476 * 180.02562 * 26 16 15 43 43 H 1.07999 * 120.04730 * 179.97438 * 27 26 16 44 44 H 1.09006 * 110.40713 * 280.80351 * 28 8 7 45 45 H 1.08998 * 110.41052 * 158.36752 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0529 1.4133 0.0000 4 8 2.7851 1.7866 -0.8858 5 8 1.7008 2.2593 0.9809 6 6 2.0663 -0.7704 -1.2244 7 6 2.8824 -1.9400 -0.6333 8 7 2.3177 -2.1429 0.7213 9 6 2.0831 -3.3101 1.3529 10 8 1.6113 -3.3108 2.4750 11 6 2.3953 -4.5759 0.6901 12 6 2.1597 -5.7453 1.3227 13 6 2.4729 -7.0172 0.6565 14 6 3.0104 -7.0190 -0.6366 15 6 3.3078 -8.2122 -1.2539 16 6 3.0637 -9.4163 -0.6002 17 8 3.3527 -10.5897 -1.2147 18 6 3.2024 -11.7145 -0.4877 19 1 2.7882 -11.6624 0.5084 20 6 3.5798 -12.9392 -1.0186 21 7 3.4327 -14.0369 -0.3093 22 14 4.2969 -13.0294 -2.7412 23 1 5.7732 -12.8853 -2.6710 24 1 3.9559 -14.3396 -3.3514 25 1 3.7316 -11.9349 -3.5706 26 6 2.5243 -9.4196 0.6828 27 6 2.2294 -8.2311 1.3104 28 6 2.0689 -0.7717 1.2238 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3635 0.5247 0.8836 32 1 2.0580 3.1567 0.9359 33 1 1.2397 -1.1504 -1.8249 34 1 2.7080 -0.1266 -1.8259 35 1 2.7524 -2.8378 -1.2376 36 1 3.9376 -1.6740 -0.5711 37 1 2.8134 -4.5753 -0.3056 38 1 1.7412 -5.7459 2.3182 39 1 3.1953 -6.0852 -1.1467 40 1 3.7271 -8.2144 -2.2493 41 1 3.6969 -14.8932 -0.6805 42 1 2.3370 -10.3564 1.1865 43 1 1.8104 -8.2347 2.3059 44 1 2.9968 -0.3224 1.5779 45 1 1.3252 -0.7879 2.0205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237779150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:45 Heat of formation + Delta-G solvation = -125.117597 kcal Electronic energy + Delta-G solvation = -28456.784563 eV Core-core repulsion = 24211.697909 eV Total energy + Delta-G solvation = -4245.086653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99612 -40.98923 -40.60768 -38.81987 -38.39145 -37.15101 -34.79221 -34.32919 -33.93797 -31.99959 -30.70787 -30.07799 -28.09086 -27.28603 -25.72982 -24.28303 -23.99253 -23.61122 -21.63435 -20.77323 -20.17750 -19.40291 -19.09073 -18.96552 -18.53113 -17.80105 -16.92623 -16.74618 -16.60397 -16.25418 -16.04755 -15.78849 -15.62226 -15.35145 -15.04551 -14.74791 -14.51764 -14.48330 -14.33061 -14.25140 -14.08238 -13.66404 -13.39489 -13.35833 -13.18499 -13.01045 -12.72516 -12.62310 -12.61270 -12.39953 -12.30288 -12.08704 -11.93275 -11.84393 -11.55841 -11.30047 -11.15903 -10.99034 -10.67374 -9.91002 -9.85537 -8.74017 -8.53144 -6.24973 -0.29818 0.56005 1.04980 1.10751 1.33235 1.37827 1.52872 1.76099 2.14244 2.26672 2.30732 2.80489 3.00959 3.15344 3.17692 3.44513 3.67540 3.71651 3.92024 4.04985 4.13221 4.19717 4.23498 4.30302 4.31366 4.45454 4.55638 4.57919 4.61040 4.66741 4.80238 4.84027 4.84997 4.88242 5.06263 5.10286 5.15145 5.21594 5.26686 5.31251 5.42012 5.56139 5.59446 5.70942 5.79772 5.83998 6.14930 6.46152 6.80026 6.93207 7.11330 7.51205 8.57609 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.001708 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.131794 B =16393.033596 C =17119.163913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C 0.501 3.499 4 O -0.536 6.536 5 O -0.507 6.507 6 C -0.124 4.124 7 C 0.095 3.905 8 N -0.620 5.620 9 C 0.572 3.428 10 O -0.592 6.592 11 C -0.237 4.237 12 C 0.016 3.984 13 C -0.160 4.160 14 C -0.038 4.038 15 C -0.193 4.193 16 C 0.137 3.863 17 O -0.233 6.233 18 C -0.403 4.403 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.244 4.244 27 C -0.045 4.045 28 C 0.120 3.880 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.430 0.570 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.286 0.714 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.078 0.922 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 32.278 -2.539 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C 0.344 3.656 4 O -0.426 6.426 5 O -0.321 6.321 6 C -0.162 4.162 7 C -0.027 4.027 8 N -0.352 5.352 9 C 0.367 3.633 10 O -0.474 6.474 11 C -0.258 4.258 12 C -0.004 4.004 13 C -0.161 4.161 14 C -0.056 4.056 15 C -0.212 4.212 16 C 0.086 3.914 17 O -0.139 6.139 18 C -0.479 4.479 19 H 0.101 0.899 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.263 4.263 27 C -0.063 4.063 28 C -0.003 4.003 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.292 0.708 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.184 0.816 40 H 0.157 0.843 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.156 0.844 44 H 0.096 0.904 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.089 31.616 -2.332 31.852 hybrid contribution 0.408 -0.204 0.038 0.457 sum -2.682 31.412 -2.294 31.609 Atomic orbital electron populations 1.21853 0.89672 1.03696 1.03845 1.21408 0.99245 0.87725 0.98398 1.23073 0.76375 0.88216 0.77976 1.90714 1.35918 1.78160 1.37802 1.84507 1.70333 1.28379 1.48863 1.22777 1.01693 0.96257 0.95458 1.22729 0.98173 1.00054 0.81743 1.48788 1.63111 1.04630 1.18710 1.18179 0.76838 0.83765 0.84534 1.90800 1.47761 1.87815 1.21065 1.22692 1.10038 0.90115 1.02922 1.22179 0.89929 0.90448 0.97847 1.18791 1.08912 0.92199 0.96221 1.21343 0.93703 0.97475 0.93042 1.20500 1.09058 0.89290 1.02389 1.19951 0.92957 0.86589 0.91899 1.83460 1.77661 1.12651 1.40146 1.20754 1.43753 0.83167 1.00269 0.89852 1.25332 0.96597 0.93144 1.03661 1.69705 1.47249 0.99104 1.39605 0.85206 0.79128 0.78315 0.78038 1.18999 1.19340 1.18282 1.21224 1.08841 0.99437 0.96802 1.21288 0.95026 0.90717 0.99249 1.22221 1.01467 0.81255 0.95344 0.90527 0.91111 0.90775 0.70811 0.88064 0.87982 0.87322 0.89564 0.82701 0.85937 0.81611 0.84262 0.90400 0.86920 0.84366 0.90388 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.16 71.98 0.59 -0.70 16 2 C -0.07 -0.74 0.97 -52.02 -0.05 -0.79 16 3 C 0.50 6.14 6.85 71.24 0.49 6.63 16 4 O -0.54 -9.40 16.01 21.94 0.35 -9.05 16 5 O -0.51 -4.02 13.30 -51.38 -0.68 -4.71 16 6 C -0.12 -1.18 6.24 31.50 0.20 -0.98 16 7 C 0.09 0.98 6.87 86.53 0.59 1.58 16 8 N -0.62 -10.54 3.32 -813.13 -2.70 -13.24 16 9 C 0.57 13.52 7.83 86.32 0.68 14.19 16 10 O -0.59 -18.75 16.50 -4.43 -0.07 -18.83 16 11 C -0.24 -4.93 8.94 23.61 0.21 -4.72 16 12 C 0.02 0.39 9.45 23.82 0.23 0.62 16 13 C -0.16 -4.60 5.87 -20.13 -0.12 -4.72 16 14 C -0.04 -1.02 9.40 22.55 0.21 -0.81 16 15 C -0.19 -6.58 9.97 22.34 0.22 -6.36 16 16 C 0.14 5.98 6.66 22.72 0.15 6.13 16 17 O -0.23 -11.99 8.57 -20.25 -0.17 -12.17 16 18 C -0.40 -22.88 9.94 67.93 0.68 -22.21 16 19 H 0.08 4.97 5.41 -2.91 -0.02 4.95 16 20 C 0.01 0.68 5.49 84.85 0.47 1.15 16 21 N -0.92 -53.28 13.96 21.62 0.30 -52.97 16 22 Si 0.97 43.50 28.62 68.60 1.96 45.47 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 26 C -0.24 -10.19 9.14 22.34 0.20 -9.99 16 27 C -0.04 -1.49 9.78 22.55 0.22 -1.27 16 28 C 0.12 1.79 6.13 86.53 0.53 2.32 16 29 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.43 -0.11 9.10 -74.06 -0.67 -0.78 16 33 H 0.10 0.73 7.71 -2.38 -0.02 0.71 16 34 H 0.10 1.10 6.47 -2.39 -0.02 1.08 16 35 H 0.11 0.76 6.69 -2.39 -0.02 0.75 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.16 2.24 4.72 -2.91 -0.01 2.23 16 38 H 0.12 3.20 7.52 -2.91 -0.02 3.18 16 39 H 0.17 2.89 6.16 -2.91 -0.02 2.87 16 40 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 41 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.11 5.21 5.62 -2.91 -0.02 5.20 16 43 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 44 H 0.08 1.09 7.86 -2.38 -0.02 1.07 16 45 H 0.09 1.51 7.60 -2.39 -0.02 1.50 16 Total: -1.00 -74.26 381.13 4.86 -69.40 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.38 Total: 16.02 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.49 Total: -19.93 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: -2.39 Total: -66.21 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.58 Total: -44.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.96 Total: 45.47 kcal Total: -74.26 4.86 -69.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237779150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.717 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds