Wall clock time and date at job start Wed Apr 1 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00281 * 2 1 4 4 H 1.48505 * 109.46944 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.47250 * 29.99709 * 3 2 1 6 6 H 1.48495 * 109.47414 * 149.99790 * 3 2 1 7 7 C 1.38725 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 180.02562 * 7 2 1 9 9 O 1.34780 * 119.99719 * 0.02562 * 7 2 1 10 10 C 1.35580 * 116.99794 * 174.96151 * 9 7 2 11 11 C 1.39176 * 119.89612 * 5.33630 * 10 9 7 12 12 C 1.37600 * 120.09784 * 179.97438 * 11 10 9 13 13 C 1.40019 * 119.89992 * 0.02562 * 12 11 10 14 14 C 1.46962 * 120.10117 * 180.02562 * 13 12 11 15 15 C 1.35025 * 119.99908 * 179.97438 * 14 13 12 16 16 C 1.46249 * 119.99753 * 179.97438 * 15 14 13 17 17 O 1.21722 * 120.00194 * 355.02840 * 16 15 14 18 18 N 1.34777 * 119.99827 * 175.30464 * 16 15 14 19 19 C 1.46931 * 120.63242 * 185.06937 * 18 16 15 20 20 C 1.53197 * 108.77500 * 233.58610 * 19 18 16 21 21 C 1.53034 * 109.31065 * 305.36355 * 20 19 18 22 22 C 1.53037 * 109.53961 * 61.36544 * 21 20 19 23 23 H 1.08997 * 109.49755 * 58.62193 * 22 21 20 24 24 C 1.50703 * 109.49708 * 178.67854 * 22 21 20 25 25 O 1.20828 * 120.00178 * 0.02562 * 24 22 21 26 26 O 1.34230 * 120.00118 * 180.02562 * 24 22 21 27 27 C 1.46927 * 120.62954 * 4.79040 * 18 16 15 28 28 C 1.40021 * 119.79576 * 0.26987 * 13 12 11 29 29 C 1.37603 * 119.90084 * 359.47044 * 28 13 12 30 30 H 0.96996 * 119.99877 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.95445 * 0.02831 * 11 10 9 32 32 H 1.08002 * 120.05053 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.99864 * 359.97438 * 14 13 12 34 34 H 1.08001 * 120.00254 * 0.02562 * 15 14 13 35 35 H 1.09000 * 109.58083 * 353.37046 * 19 18 16 36 36 H 1.08999 * 109.58377 * 113.65386 * 19 18 16 37 37 H 1.08997 * 109.49408 * 65.31659 * 20 19 18 38 38 H 1.09003 * 109.49454 * 185.37826 * 20 19 18 39 39 H 1.09002 * 109.45755 * 181.38979 * 21 20 19 40 40 H 1.09003 * 109.46122 * 301.34576 * 21 20 19 41 41 H 0.96700 * 117.00494 * 180.02562 * 26 24 22 42 42 H 1.09001 * 109.58406 * 246.20129 * 27 18 16 43 43 H 1.08998 * 109.58516 * 6.62730 * 27 18 16 44 44 H 1.08004 * 120.05179 * 179.72829 * 28 13 12 45 45 H 1.07996 * 119.94844 * 180.27915 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0086 -1.2014 0.0005 8 1 3.0886 -1.2014 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0691 -3.5034 -0.1050 11 6 3.4590 -3.4336 -0.0949 12 6 4.2084 -4.5827 -0.2012 13 6 3.5706 -5.8234 -0.3203 14 6 4.3666 -7.0536 -0.4336 15 6 3.7494 -8.2490 -0.5478 16 6 4.5416 -9.4731 -0.6611 17 8 5.7542 -9.4078 -0.7436 18 7 3.9285 -10.6733 -0.6797 19 6 4.7138 -11.9151 -0.6814 20 6 4.2642 -12.7812 -1.8623 21 6 2.7507 -12.9947 -1.7861 22 6 2.0379 -11.6437 -1.8790 23 1 2.3084 -11.1532 -2.8140 24 6 0.5468 -11.8577 -1.8364 25 8 0.0994 -12.9760 -1.7411 26 8 -0.2844 -10.8059 -1.9045 27 6 2.4621 -10.7646 -0.6927 28 6 2.1719 -5.8881 -0.3363 29 6 1.4306 -4.7342 -0.2240 30 1 -0.4850 0.8400 -0.0004 31 1 3.9502 -2.4762 -0.0026 32 1 5.2870 -4.5276 -0.1937 33 1 5.4453 -7.0014 -0.4255 34 1 2.6706 -8.3012 -0.5563 35 1 5.7726 -11.6777 -0.7846 36 1 4.5491 -12.4527 0.2524 37 1 4.5143 -12.2797 -2.7972 38 1 4.7707 -13.7455 -1.8199 39 1 2.4318 -13.6312 -2.6115 40 1 2.4988 -13.4739 -0.8400 41 1 -1.2327 -10.9929 -1.8731 42 1 2.1157 -11.2117 0.2391 43 1 2.0349 -9.7680 -0.8033 44 1 1.6757 -6.8425 -0.4323 45 1 0.3518 -4.7836 -0.2317 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237944676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:36 Heat of formation + Delta-G solvation = -114.353594 kcal Electronic energy + Delta-G solvation = -28756.672904 eV Core-core repulsion = 24512.053013 eV Total energy + Delta-G solvation = -4244.619891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05192 -39.93346 -39.18597 -37.56452 -36.86401 -36.45352 -33.47295 -33.07640 -32.39373 -31.81764 -30.45011 -28.36055 -26.07787 -25.53537 -25.17230 -23.52771 -22.28063 -21.88926 -20.77860 -20.03686 -18.79535 -18.41221 -18.11398 -17.60304 -17.10902 -16.74518 -16.45530 -15.71285 -15.13527 -15.01200 -14.82453 -14.56463 -14.46456 -14.32162 -13.92890 -13.85153 -13.67677 -13.48682 -13.19594 -13.04241 -12.86867 -12.57800 -12.08748 -11.96942 -11.85958 -11.80714 -11.76413 -11.40237 -11.35184 -11.14838 -11.14188 -11.06135 -10.88754 -10.69181 -10.55500 -9.76762 -9.63001 -9.52268 -8.95277 -8.82260 -8.40275 -7.14038 -6.67284 -4.21920 1.02292 1.76114 2.11759 2.49237 2.54966 2.92202 3.02612 3.03438 3.08195 3.48300 3.80563 4.08339 4.27718 4.40594 4.49012 4.56577 4.75815 4.80528 4.89130 4.93845 5.00986 5.05669 5.10399 5.24424 5.33319 5.41595 5.46257 5.49641 5.54440 5.57550 5.65439 5.71110 5.86177 5.99186 6.09825 6.12143 6.21409 6.44299 6.48863 6.58378 6.76885 6.89411 7.10641 7.20658 7.23952 7.31902 7.49843 7.61783 7.78121 8.20831 8.77534 9.44309 10.49291 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.002006 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.582960 B =13958.033016 C =15438.461118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.098 0.902 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.243 4.243 12 C -0.034 4.034 13 C -0.201 4.201 14 C 0.043 3.957 15 C -0.291 4.291 16 C 0.562 3.438 17 O -0.554 6.554 18 N -0.616 5.616 19 C 0.108 3.892 20 C -0.133 4.133 21 C -0.104 4.104 22 C -0.098 4.098 23 H 0.116 0.884 24 C 0.487 3.513 25 O -0.514 6.514 26 O -0.511 6.511 27 C 0.120 3.880 28 C -0.042 4.042 29 C -0.199 4.199 30 H 0.274 0.726 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.413 0.587 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.640 -21.245 -2.746 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.062 6.062 10 C 0.111 3.889 11 C -0.262 4.262 12 C -0.052 4.052 13 C -0.202 4.202 14 C 0.024 3.976 15 C -0.311 4.311 16 C 0.356 3.644 17 O -0.434 6.434 18 N -0.349 5.349 19 C -0.014 4.014 20 C -0.171 4.171 21 C -0.142 4.142 22 C -0.118 4.118 23 H 0.134 0.866 24 C 0.328 3.672 25 O -0.401 6.401 26 O -0.323 6.323 27 C -0.004 4.004 28 C -0.060 4.060 29 C -0.218 4.218 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.272 0.728 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.119 -21.178 -2.738 21.748 hybrid contribution -0.417 0.616 -0.044 0.745 sum 3.702 -20.562 -2.782 21.077 Atomic orbital electron populations 1.70009 1.06150 1.28296 1.43935 1.25400 0.95908 0.99169 0.96000 0.85644 0.79005 0.79502 0.78967 1.19607 1.20049 1.18945 1.21481 0.92114 0.80553 1.52695 0.88514 1.83905 1.34980 1.11806 1.75548 1.19619 0.90327 0.87878 0.91112 1.21101 0.93642 0.99142 1.12293 1.20989 0.98592 0.91379 0.94253 1.18451 0.92984 0.92269 1.16467 1.22310 0.99189 0.90982 0.85149 1.22513 0.99811 0.91792 1.17023 1.18410 0.87431 0.83478 0.75041 1.90770 1.14459 1.86965 1.51233 1.47871 1.05887 1.06106 1.75079 1.21608 0.97626 0.84306 0.97906 1.21932 0.95126 1.00624 0.99438 1.21452 0.94582 0.94157 1.04015 1.21568 0.86921 1.00185 1.03092 0.86584 1.23280 0.90171 0.82134 0.71571 1.90731 1.78530 1.25522 1.45353 1.84562 1.23273 1.39574 1.84884 1.21735 0.80963 1.01453 0.96260 1.20870 0.92618 0.96880 0.95613 1.20146 0.99782 0.90139 1.11766 0.91571 0.85119 0.86809 0.85941 0.85525 0.88572 0.91503 0.91070 0.89960 0.90561 0.90635 0.72768 0.90775 0.87527 0.86450 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.31 29.55 -169.99 -5.02 14.28 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.39 -10.30 9.48 30.91 0.29 -10.01 16 8 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 9 O -0.16 -4.32 9.74 0.72 0.01 -4.31 16 10 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 11 C -0.24 -4.92 9.14 -39.47 -0.36 -5.28 16 12 C -0.03 -0.59 9.78 -39.15 -0.38 -0.97 16 13 C -0.20 -3.31 5.87 -105.03 -0.62 -3.93 16 14 C 0.04 0.64 9.45 -37.19 -0.35 0.29 16 15 C -0.29 -3.82 8.73 -37.51 -0.33 -4.15 16 16 C 0.56 7.61 7.61 -13.04 -0.10 7.51 16 17 O -0.55 -9.28 15.66 5.17 0.08 -9.20 16 18 N -0.62 -6.30 2.97 -174.20 -0.52 -6.82 16 19 C 0.11 0.92 6.44 -3.71 -0.02 0.90 16 20 C -0.13 -0.87 6.08 -26.61 -0.16 -1.04 16 21 C -0.10 -0.71 4.46 -26.69 -0.12 -0.83 16 22 C -0.10 -0.72 2.79 -91.43 -0.26 -0.97 16 23 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 24 C 0.49 4.00 7.63 36.01 0.27 4.27 16 25 O -0.51 -5.62 16.74 -18.75 -0.31 -5.94 16 26 O -0.51 -3.39 13.36 -39.26 -0.52 -3.91 16 27 C 0.12 0.96 5.56 -3.49 -0.02 0.94 16 28 C -0.04 -0.69 9.40 -39.15 -0.37 -1.05 16 29 C -0.20 -3.88 9.97 -39.47 -0.39 -4.27 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.13 2.63 5.61 -52.49 -0.29 2.33 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.12 1.79 7.53 -52.49 -0.40 1.39 16 34 H 0.13 1.43 3.90 -52.49 -0.20 1.23 16 35 H 0.10 0.97 6.99 -51.93 -0.36 0.61 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 40 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 41 H 0.41 1.16 9.10 45.56 0.41 1.57 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.85 5.36 -51.93 -0.28 0.57 16 44 H 0.12 1.56 6.16 -52.48 -0.32 1.24 16 45 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -32.76 378.73 -7.74 -40.50 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.65 Total: 6.59 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -3.27 Total: -14.09 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.24 Total: -29.63 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.75 Total: -23.36 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.76 -7.74 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237944676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.849 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds