Wall clock time and date at job start Wed Apr 1 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00398 * 2 1 4 4 H 1.48502 * 109.47301 * 269.99934 * 3 2 1 5 5 H 1.48505 * 109.47243 * 29.99455 * 3 2 1 6 6 H 1.48497 * 109.47492 * 149.99751 * 3 2 1 7 7 C 1.38717 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99945 * 180.02562 * 7 2 1 9 9 O 1.34787 * 120.00037 * 0.27736 * 7 2 1 10 10 C 1.35568 * 116.99664 * 174.65191 * 9 7 2 11 11 C 1.39179 * 119.89437 * 185.43775 * 10 9 7 12 12 C 1.37600 * 120.09970 * 179.72730 * 11 10 9 13 13 C 1.40023 * 119.89792 * 0.53721 * 12 11 10 14 14 C 1.46962 * 120.10375 * 179.70943 * 13 12 11 15 15 C 1.35030 * 119.99581 * 0.02562 * 14 13 12 16 16 C 1.46251 * 119.99628 * 180.02562 * 15 14 13 17 17 O 1.21720 * 120.00262 * 5.07598 * 16 15 14 18 18 N 1.34773 * 119.99735 * 185.07624 * 16 15 14 19 19 C 1.46921 * 120.63332 * 354.52497 * 18 16 15 20 20 C 1.53627 * 108.54932 * 126.36982 * 19 18 16 21 21 C 1.53041 * 109.23712 * 54.85440 * 20 19 18 22 22 C 1.53041 * 109.54050 * 298.51060 * 21 20 19 23 23 C 1.46931 * 120.63299 * 174.80321 * 18 16 15 24 24 H 1.08999 * 109.58783 * 113.64929 * 23 18 16 25 25 C 1.50706 * 109.58238 * 353.37205 * 23 18 16 26 26 O 1.20819 * 120.00076 * 310.19668 * 25 23 18 27 27 O 1.34233 * 119.99788 * 130.19901 * 25 23 18 28 28 C 1.40024 * 119.79746 * 359.73268 * 13 12 11 29 29 C 1.37596 * 119.89767 * 359.97438 * 28 13 12 30 30 H 0.97004 * 119.99716 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.94892 * 359.97438 * 11 10 9 32 32 H 1.08005 * 120.05171 * 180.27040 * 12 11 10 33 33 H 1.07997 * 119.99983 * 180.02562 * 14 13 12 34 34 H 1.07994 * 119.99714 * 359.97438 * 15 14 13 35 35 H 1.09010 * 109.58658 * 246.20173 * 19 18 16 36 36 H 1.09000 * 109.58653 * 6.62381 * 19 18 16 37 37 H 1.09005 * 109.62806 * 294.86533 * 20 19 18 38 38 H 1.09000 * 109.45838 * 174.74295 * 20 19 18 39 39 H 1.09004 * 109.45550 * 178.49808 * 21 20 19 40 40 H 1.08994 * 109.45024 * 58.53260 * 21 20 19 41 41 H 1.09002 * 109.50099 * 301.42007 * 22 21 20 42 42 H 1.08996 * 109.49815 * 181.31732 * 22 21 20 43 43 H 0.96700 * 117.00178 * 180.02562 * 27 25 23 44 44 H 1.07999 * 120.05263 * 180.02562 * 28 13 12 45 45 H 1.08005 * 119.94729 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 3.0886 -1.2014 0.0010 9 8 1.3346 -2.3686 -0.0046 10 6 2.0689 -3.5027 -0.1163 11 6 1.4303 -4.7330 -0.2421 12 6 2.1714 -5.8862 -0.3614 13 6 3.5701 -5.8218 -0.3449 14 6 4.3660 -7.0513 -0.4656 15 6 3.7486 -8.2454 -0.5932 16 6 4.5407 -9.4690 -0.7128 17 8 5.7522 -9.4228 -0.6048 18 7 3.9291 -10.6478 -0.9426 19 6 2.4629 -10.7403 -0.9565 20 6 2.0268 -11.3907 -2.2782 21 6 2.7425 -12.7338 -2.4395 22 6 4.2548 -12.5049 -2.4917 23 6 4.7160 -11.8661 -1.1780 24 1 4.5625 -12.5649 -0.3557 25 6 6.1779 -11.5125 -1.2741 26 8 6.5363 -10.6172 -2.0020 27 8 7.0817 -12.1923 -0.5511 28 6 4.2081 -4.5824 -0.2125 29 6 3.4588 -3.4339 -0.0999 30 1 -0.4850 0.8401 -0.0004 31 1 0.3515 -4.7821 -0.2500 32 1 1.6751 -6.8400 -0.4633 33 1 5.4447 -6.9997 -0.4523 34 1 2.6700 -8.2968 -0.6061 35 1 2.1273 -11.3503 -0.1177 36 1 2.0330 -9.7416 -0.8797 37 1 2.2868 -10.7374 -3.1111 38 1 0.9488 -11.5520 -2.2651 39 1 2.4154 -13.2108 -3.3634 40 1 2.5016 -13.3774 -1.5935 41 1 4.4939 -11.8411 -3.3227 42 1 4.7626 -13.4593 -2.6301 43 1 8.0074 -11.9291 -0.6457 44 1 5.2866 -4.5279 -0.1997 45 1 3.9501 -2.4774 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238036973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:22 Heat of formation + Delta-G solvation = -92.671149 kcal Electronic energy + Delta-G solvation = -29223.626670 eV Core-core repulsion = 24979.947000 eV Total energy + Delta-G solvation = -4243.679670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22295 -39.28487 -39.02328 -37.63489 -36.85752 -35.94889 -33.42539 -33.03992 -32.36131 -31.77914 -30.43802 -28.33985 -26.42099 -25.63908 -24.45139 -23.60065 -22.19974 -21.69866 -21.22212 -19.85918 -18.71560 -18.36853 -17.94511 -17.48722 -17.06191 -16.36811 -16.10000 -15.49401 -15.34978 -14.89743 -14.78556 -14.53967 -14.39170 -14.13234 -13.95561 -13.83988 -13.64016 -13.42974 -13.07097 -13.03181 -12.89085 -12.56841 -11.95539 -11.91142 -11.80427 -11.75081 -11.53216 -11.47273 -11.27044 -11.12630 -11.08007 -10.98415 -10.66386 -10.54294 -10.32546 -9.63174 -9.50891 -9.35823 -8.89010 -8.81210 -8.39041 -7.11951 -6.65890 -4.20647 1.05899 2.12345 2.12839 2.51370 2.75804 3.03229 3.04164 3.05385 3.09202 3.56188 3.81845 4.27859 4.39475 4.50083 4.52389 4.59368 4.76180 4.83295 4.90795 4.99921 5.04279 5.11918 5.20007 5.29517 5.35351 5.39227 5.47247 5.53228 5.57702 5.63719 5.65593 5.69037 5.91522 6.00299 6.11547 6.17300 6.45521 6.48445 6.57733 6.59233 6.78408 6.90634 7.11865 7.21244 7.24445 7.31919 7.63021 7.79570 7.94176 8.28455 8.79003 9.45794 10.50737 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.001957 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.406831 B =14303.070252 C =15252.076559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.199 4.199 12 C -0.042 4.042 13 C -0.198 4.198 14 C 0.041 3.959 15 C -0.282 4.282 16 C 0.553 3.447 17 O -0.530 6.530 18 N -0.611 5.611 19 C 0.110 3.890 20 C -0.140 4.140 21 C -0.116 4.116 22 C -0.125 4.125 23 C 0.161 3.839 24 H 0.100 0.900 25 C 0.482 3.518 26 O -0.476 6.476 27 O -0.523 6.523 28 C -0.034 4.034 29 C -0.242 4.242 30 H 0.274 0.726 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.410 0.590 44 H 0.114 0.886 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 -24.101 -2.653 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.063 6.063 10 C 0.111 3.889 11 C -0.218 4.218 12 C -0.061 4.061 13 C -0.199 4.199 14 C 0.022 3.978 15 C -0.303 4.303 16 C 0.347 3.653 17 O -0.409 6.409 18 N -0.348 5.348 19 C -0.012 4.012 20 C -0.179 4.179 21 C -0.153 4.153 22 C -0.163 4.163 23 C 0.056 3.944 24 H 0.117 0.883 25 C 0.322 3.678 26 O -0.360 6.360 27 O -0.335 6.335 28 C -0.053 4.053 29 C -0.261 4.261 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.857 -23.664 -2.734 24.312 hybrid contribution 0.990 0.999 -0.052 1.408 sum 5.848 -22.665 -2.786 23.572 Atomic orbital electron populations 1.70014 1.06139 1.28264 1.44036 1.25396 0.95911 0.99155 0.96011 0.85645 0.79004 0.79511 0.78961 1.19617 1.20046 1.18954 1.21479 0.92108 0.80560 1.52698 0.88541 1.83904 1.34964 1.11826 1.75603 1.19612 0.90315 0.87904 0.91112 1.20141 0.99751 0.90169 1.11771 1.20851 0.92604 0.96827 0.95798 1.18451 0.92972 0.92298 1.16222 1.22299 0.99202 0.91009 0.85332 1.22432 0.99600 0.91615 1.16647 1.18479 0.87592 0.83493 0.75705 1.90893 1.14155 1.85795 1.50104 1.47801 1.06825 1.06806 1.73340 1.21966 0.78382 1.03103 0.97718 1.22065 1.00651 0.96982 0.98170 1.21497 0.93559 0.97514 1.02780 1.21896 0.97398 1.01243 0.95744 1.20483 0.85450 0.88249 1.00241 0.88259 1.22470 0.88569 0.78832 0.77907 1.90746 1.80898 1.26384 1.37967 1.84417 1.22006 1.61494 1.65631 1.20989 0.98605 0.91388 0.94269 1.21101 0.93652 0.99138 1.12226 0.91592 0.86102 0.86534 0.86029 0.85542 0.91000 0.88306 0.90902 0.90151 0.90851 0.91271 0.90239 0.90049 0.73181 0.86838 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.39 -10.44 9.48 30.91 0.29 -10.15 16 8 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 9 O -0.16 -4.39 9.74 0.73 0.01 -4.38 16 10 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 11 C -0.20 -3.95 9.97 -39.46 -0.39 -4.35 16 12 C -0.04 -0.72 9.40 -39.15 -0.37 -1.09 16 13 C -0.20 -3.43 5.87 -105.03 -0.62 -4.05 16 14 C 0.04 0.66 9.45 -37.19 -0.35 0.30 16 15 C -0.28 -4.03 8.75 -37.50 -0.33 -4.35 16 16 C 0.55 8.33 7.23 -13.04 -0.09 8.24 16 17 O -0.53 -9.76 11.47 -20.52 -0.24 -9.99 16 18 N -0.61 -6.89 2.97 -167.95 -0.50 -7.39 16 19 C 0.11 0.85 6.37 -3.49 -0.02 0.83 16 20 C -0.14 -0.87 6.10 -26.38 -0.16 -1.04 16 21 C -0.12 -0.63 5.88 -26.69 -0.16 -0.79 16 22 C -0.12 -0.94 5.35 -26.61 -0.14 -1.08 16 23 C 0.16 1.61 3.34 -68.75 -0.23 1.38 16 24 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 25 C 0.48 6.26 5.44 36.01 0.20 6.46 16 26 O -0.48 -8.08 14.50 -27.25 -0.40 -8.47 16 27 O -0.52 -5.43 13.42 -39.27 -0.53 -5.96 16 28 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 29 C -0.24 -5.04 9.14 -39.47 -0.36 -5.40 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.12 1.58 6.16 -52.48 -0.32 1.26 16 33 H 0.12 1.98 7.53 -52.49 -0.40 1.58 16 34 H 0.13 1.51 3.85 -52.49 -0.20 1.30 16 35 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.10 0.75 5.30 -51.93 -0.28 0.48 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.41 2.85 9.10 45.56 0.41 3.26 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.13 2.70 5.62 -52.48 -0.29 2.40 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -34.41 372.66 -8.48 -42.89 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.71 Total: 7.72 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.47 Total: -11.52 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.26 Total: -30.43 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.15 Total: -28.81 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.41 -8.48 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238036973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.781 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds