Wall clock time and date at job start Wed Apr 1 2020 03:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00398 * 2 1 4 4 H 1.48502 * 109.47301 * 269.99934 * 3 2 1 5 5 H 1.48505 * 109.47243 * 29.99455 * 3 2 1 6 6 H 1.48497 * 109.47492 * 149.99751 * 3 2 1 7 7 C 1.38717 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99945 * 180.02562 * 7 2 1 9 9 O 1.34787 * 120.00037 * 0.27736 * 7 2 1 10 10 C 1.35568 * 116.99664 * 174.65191 * 9 7 2 11 11 C 1.39179 * 119.89437 * 185.43775 * 10 9 7 12 12 C 1.37600 * 120.09970 * 179.72730 * 11 10 9 13 13 C 1.40023 * 119.89792 * 0.53721 * 12 11 10 14 14 C 1.46962 * 120.10375 * 179.70943 * 13 12 11 15 15 C 1.35030 * 119.99581 * 0.02562 * 14 13 12 16 16 C 1.46251 * 119.99628 * 180.02562 * 15 14 13 17 17 O 1.21720 * 120.00262 * 5.07598 * 16 15 14 18 18 N 1.34773 * 119.99735 * 185.07624 * 16 15 14 19 19 C 1.46921 * 120.63332 * 354.52497 * 18 16 15 20 20 C 1.53627 * 108.54932 * 126.36982 * 19 18 16 21 21 C 1.53041 * 109.23712 * 54.85440 * 20 19 18 22 22 C 1.53041 * 109.54050 * 298.51060 * 21 20 19 23 23 C 1.46931 * 120.63299 * 174.80321 * 18 16 15 24 24 H 1.08999 * 109.58783 * 113.64929 * 23 18 16 25 25 C 1.50706 * 109.58238 * 353.37205 * 23 18 16 26 26 O 1.20819 * 120.00076 * 310.19668 * 25 23 18 27 27 O 1.34233 * 119.99788 * 130.19901 * 25 23 18 28 28 C 1.40024 * 119.79746 * 359.73268 * 13 12 11 29 29 C 1.37596 * 119.89767 * 359.97438 * 28 13 12 30 30 H 0.97004 * 119.99716 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.94892 * 359.97438 * 11 10 9 32 32 H 1.08005 * 120.05171 * 180.27040 * 12 11 10 33 33 H 1.07997 * 119.99983 * 180.02562 * 14 13 12 34 34 H 1.07994 * 119.99714 * 359.97438 * 15 14 13 35 35 H 1.09010 * 109.58658 * 246.20173 * 19 18 16 36 36 H 1.09000 * 109.58653 * 6.62381 * 19 18 16 37 37 H 1.09005 * 109.62806 * 294.86533 * 20 19 18 38 38 H 1.09000 * 109.45838 * 174.74295 * 20 19 18 39 39 H 1.09004 * 109.45550 * 178.49808 * 21 20 19 40 40 H 1.08994 * 109.45024 * 58.53260 * 21 20 19 41 41 H 1.09002 * 109.50099 * 301.42007 * 22 21 20 42 42 H 1.08996 * 109.49815 * 181.31732 * 22 21 20 43 43 H 0.96700 * 117.00178 * 180.02562 * 27 25 23 44 44 H 1.07999 * 120.05263 * 180.02562 * 28 13 12 45 45 H 1.08005 * 119.94729 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 3.0886 -1.2014 0.0010 9 8 1.3346 -2.3686 -0.0046 10 6 2.0689 -3.5027 -0.1163 11 6 1.4303 -4.7330 -0.2421 12 6 2.1714 -5.8862 -0.3614 13 6 3.5701 -5.8218 -0.3449 14 6 4.3660 -7.0513 -0.4656 15 6 3.7486 -8.2454 -0.5932 16 6 4.5407 -9.4690 -0.7128 17 8 5.7522 -9.4228 -0.6048 18 7 3.9291 -10.6478 -0.9426 19 6 2.4629 -10.7403 -0.9565 20 6 2.0268 -11.3907 -2.2782 21 6 2.7425 -12.7338 -2.4395 22 6 4.2548 -12.5049 -2.4917 23 6 4.7160 -11.8661 -1.1780 24 1 4.5625 -12.5649 -0.3557 25 6 6.1779 -11.5125 -1.2741 26 8 6.5363 -10.6172 -2.0020 27 8 7.0817 -12.1923 -0.5511 28 6 4.2081 -4.5824 -0.2125 29 6 3.4588 -3.4339 -0.0999 30 1 -0.4850 0.8401 -0.0004 31 1 0.3515 -4.7821 -0.2500 32 1 1.6751 -6.8400 -0.4633 33 1 5.4447 -6.9997 -0.4523 34 1 2.6700 -8.2968 -0.6061 35 1 2.1273 -11.3503 -0.1177 36 1 2.0330 -9.7416 -0.8797 37 1 2.2868 -10.7374 -3.1111 38 1 0.9488 -11.5520 -2.2651 39 1 2.4154 -13.2108 -3.3634 40 1 2.5016 -13.3774 -1.5935 41 1 4.4939 -11.8411 -3.3227 42 1 4.7626 -13.4593 -2.6301 43 1 8.0074 -11.9291 -0.6457 44 1 5.2866 -4.5279 -0.1997 45 1 3.9501 -2.4774 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238036973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:21 Heat of formation + Delta-G solvation = -114.397342 kcal Electronic energy + Delta-G solvation = -29224.568788 eV Core-core repulsion = 24979.947000 eV Total energy + Delta-G solvation = -4244.621788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18041 -40.86206 -40.10306 -38.67755 -38.29996 -36.93351 -34.81599 -34.18306 -33.77598 -32.56542 -31.98213 -29.75747 -27.62331 -27.10268 -25.13675 -24.85910 -23.72353 -22.75538 -22.11054 -21.00317 -20.09373 -19.39737 -19.21061 -18.82509 -18.50680 -17.31998 -17.05653 -16.69143 -16.49113 -16.24974 -16.05767 -15.83728 -15.61888 -15.32903 -15.09647 -14.91955 -14.77643 -14.54773 -14.37030 -14.08813 -13.91996 -13.64947 -13.59756 -13.33795 -13.09328 -12.73061 -12.64000 -12.55625 -12.41480 -12.23143 -12.13991 -12.09595 -11.76370 -11.60667 -11.27974 -11.21866 -11.12707 -10.63886 -10.45525 -9.90915 -9.72935 -8.69618 -8.53088 -6.18994 -0.28312 0.56985 1.07698 1.22948 1.35272 1.45091 1.52001 1.88119 2.14025 2.14578 2.35906 2.84917 3.15977 3.40957 3.58170 3.74525 3.80144 3.89373 3.97812 4.05632 4.08078 4.14718 4.23099 4.25390 4.40390 4.45621 4.52480 4.62104 4.71969 4.78964 4.86599 4.92905 4.98640 5.03590 5.12272 5.17540 5.22053 5.24586 5.31971 5.45043 5.47081 5.56565 5.62329 5.73882 5.78212 5.96413 6.08153 6.27684 6.91367 6.99701 7.22270 7.67932 8.68878 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.001957 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.406831 B =14303.070252 C =15252.076559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.018 4.018 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.417 4.417 8 H 0.104 0.896 9 O -0.217 6.217 10 C 0.131 3.869 11 C -0.204 4.204 12 C -0.035 4.035 13 C -0.171 4.171 14 C 0.016 3.984 15 C -0.245 4.245 16 C 0.538 3.462 17 O -0.567 6.567 18 N -0.603 5.603 19 C 0.100 3.900 20 C -0.138 4.138 21 C -0.112 4.112 22 C -0.120 4.120 23 C 0.154 3.846 24 H 0.128 0.872 25 C 0.478 3.522 26 O -0.524 6.524 27 O -0.518 6.518 28 C -0.042 4.042 29 C -0.249 4.249 30 H 0.275 0.725 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.422 0.578 44 H 0.139 0.861 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 -28.123 -2.680 28.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.493 4.493 8 H 0.122 0.878 9 O -0.122 6.122 10 C 0.079 3.921 11 C -0.223 4.223 12 C -0.053 4.053 13 C -0.172 4.172 14 C -0.004 4.004 15 C -0.265 4.265 16 C 0.331 3.669 17 O -0.449 6.449 18 N -0.339 5.339 19 C -0.021 4.021 20 C -0.176 4.176 21 C -0.149 4.149 22 C -0.158 4.158 23 C 0.050 3.950 24 H 0.145 0.855 25 C 0.320 3.680 26 O -0.412 6.412 27 O -0.331 6.331 28 C -0.060 4.060 29 C -0.268 4.268 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.179 0.821 33 H 0.134 0.866 34 H 0.175 0.825 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.283 0.717 44 H 0.157 0.843 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.137 -27.798 -2.759 28.403 hybrid contribution 1.132 1.535 -0.093 1.910 sum 6.269 -26.262 -2.852 27.151 Atomic orbital electron populations 1.70143 1.07987 1.29118 1.47632 1.26591 0.96846 1.02716 0.95501 0.84596 0.77879 0.74555 0.79295 1.18823 1.19446 1.17710 1.21883 0.92677 0.81254 1.53466 0.87840 1.83885 1.36142 1.12727 1.79489 1.20186 0.91422 0.88123 0.92402 1.20426 1.00488 0.90013 1.11344 1.21257 0.92358 0.97593 0.94092 1.18741 0.93394 0.92547 1.12474 1.22140 0.98941 0.90919 0.88423 1.22805 1.01079 0.90868 1.11715 1.18697 0.87230 0.84853 0.76094 1.90892 1.15803 1.86545 1.51685 1.47931 1.08527 1.06097 1.71310 1.22344 0.75869 1.04123 0.99721 1.22072 1.02216 0.96878 0.96481 1.21526 0.91440 0.97487 1.04436 1.21918 0.99379 1.01227 0.93256 1.20864 0.83423 0.88072 1.02621 0.85477 1.23174 0.90013 0.77941 0.76826 1.90725 1.81850 1.28617 1.40005 1.84396 1.22968 1.60936 1.64793 1.21281 0.99935 0.90862 0.93907 1.21184 0.93193 0.99982 1.12421 0.91551 0.85538 0.82128 0.86622 0.82503 0.88220 0.88096 0.92753 0.87690 0.89545 0.89162 0.92796 0.88128 0.71724 0.84277 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.16 13.67 21.62 0.30 -53.86 16 2 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 3 Si 1.02 41.68 29.55 68.60 2.03 43.71 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 7 C -0.42 -23.53 9.48 67.93 0.64 -22.88 16 8 H 0.10 5.37 5.18 -2.91 -0.02 5.35 16 9 O -0.22 -12.57 9.74 -20.30 -0.20 -12.77 16 10 C 0.13 6.24 6.66 22.72 0.15 6.39 16 11 C -0.20 -8.03 9.97 22.35 0.22 -7.81 16 12 C -0.04 -1.10 9.40 22.55 0.21 -0.89 16 13 C -0.17 -5.51 5.87 -20.13 -0.12 -5.63 16 14 C 0.02 0.46 9.45 23.82 0.23 0.68 16 15 C -0.24 -6.10 8.75 23.62 0.21 -5.90 16 16 C 0.54 14.83 7.23 86.33 0.62 15.45 16 17 O -0.57 -20.22 11.47 20.15 0.23 -19.99 16 18 N -0.60 -11.51 2.97 -803.50 -2.38 -13.90 16 19 C 0.10 1.05 6.37 86.51 0.55 1.60 16 20 C -0.14 -1.10 6.10 30.82 0.19 -0.92 16 21 C -0.11 -0.70 5.88 30.62 0.18 -0.52 16 22 C -0.12 -1.42 5.35 30.67 0.16 -1.25 16 23 C 0.15 2.61 3.34 44.23 0.15 2.76 16 24 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 25 C 0.48 11.70 5.44 71.24 0.39 12.09 16 26 O -0.52 -17.67 14.50 30.12 0.44 -17.24 16 27 O -0.52 -9.86 13.42 -51.44 -0.69 -10.55 16 28 C -0.04 -1.48 9.78 22.55 0.22 -1.26 16 29 C -0.25 -10.61 9.14 22.34 0.20 -10.40 16 30 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 32 H 0.16 3.53 6.16 -2.91 -0.02 3.51 16 33 H 0.12 3.60 7.53 -2.91 -0.02 3.58 16 34 H 0.16 2.88 3.85 -2.91 -0.01 2.87 16 35 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.10 1.00 5.30 -2.39 -0.01 0.99 16 37 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.42 5.42 9.10 -74.06 -0.67 4.75 16 44 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.12 5.35 5.62 -2.91 -0.02 5.33 16 Total: -1.00 -82.09 372.66 4.78 -77.31 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.38 Total: 26.28 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.68 Total: -18.99 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.09 Total: -67.76 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.22 Total: -60.55 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -82.09 4.78 -77.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238036973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.087 kcal (2) G-P(sol) polarization free energy of solvation -82.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds