Wall clock time and date at job start Wed Apr 1 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00511 * 2 1 4 4 H 1.48505 * 109.46998 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47130 * 29.99659 * 3 2 1 6 6 H 1.48498 * 109.47407 * 150.00441 * 3 2 1 7 7 C 1.37878 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00687 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.47034 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47010 * 180.02562 * 11 10 9 13 13 O 1.42103 * 110.54186 * 73.28536 * 12 11 10 14 14 O 1.42100 * 110.54446 * 296.53682 * 12 11 10 15 15 N 1.65595 * 104.44752 * 184.91156 * 12 11 10 16 16 C 1.47405 * 126.02099 * 261.82528 * 15 12 11 17 17 H 1.08999 * 109.89901 * 62.09665 * 16 15 12 18 18 C 1.50696 * 109.90412 * 300.85950 * 16 15 12 19 19 O 1.20831 * 119.99747 * 348.10898 * 18 16 15 20 20 O 1.34227 * 120.00180 * 168.11557 * 18 16 15 21 21 C 1.54488 * 107.15472 * 181.47155 * 16 15 12 22 22 C 1.55959 * 102.65683 * 22.77682 * 21 16 15 23 23 H 1.09000 * 112.77633 * 203.19532 * 22 21 16 24 24 C 1.53017 * 106.57725 * 79.36624 * 22 21 16 25 25 C 1.53174 * 110.42916 * 197.59842 * 24 22 21 26 26 C 1.53237 * 109.27576 * 60.94506 * 25 24 22 27 27 C 1.52874 * 108.41876 * 297.06470 * 26 25 24 28 28 C 1.46521 * 126.02187 * 81.83364 * 15 12 11 29 29 H 1.09001 * 108.48389 * 270.33998 * 28 15 12 30 30 H 0.97010 * 119.99210 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47082 * 60.00361 * 9 7 2 32 32 H 1.08998 * 109.47565 * 299.99987 * 9 7 2 33 33 H 1.08995 * 109.47162 * 60.00479 * 10 9 7 34 34 H 1.08997 * 109.47474 * 299.99772 * 10 9 7 35 35 H 1.08995 * 109.46747 * 60.00235 * 11 10 9 36 36 H 1.08997 * 109.46812 * 300.00188 * 11 10 9 37 37 H 0.96695 * 117.00348 * 179.97438 * 20 18 16 38 38 H 1.08997 * 110.77460 * 264.47971 * 21 16 15 39 39 H 1.09003 * 110.93144 * 141.13724 * 21 16 15 40 40 H 1.09000 * 109.22950 * 317.18466 * 24 22 21 41 41 H 1.09003 * 109.22715 * 76.55761 * 24 22 21 42 42 H 1.09003 * 109.09342 * 301.13100 * 25 24 22 43 43 H 1.08999 * 109.51727 * 181.01605 * 25 24 22 44 44 H 1.09000 * 109.68067 * 177.33096 * 26 25 24 45 45 H 1.09009 * 109.70609 * 56.81197 * 26 25 24 46 46 H 1.09000 * 109.12169 * 298.76852 * 27 26 25 47 47 H 1.08990 * 109.08186 * 179.64456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 0.0001 11 6 5.5515 -2.6368 -0.0012 12 16 6.1560 -4.3471 -0.0018 13 8 5.9603 -4.9446 -1.2761 14 8 5.7626 -5.0155 1.1889 15 7 7.8001 -4.2042 0.1342 16 6 8.7701 -4.2644 -0.9741 17 1 8.5860 -3.4485 -1.6730 18 6 8.6558 -5.5885 -1.6845 19 8 8.0123 -6.4847 -1.1920 20 8 9.2689 -5.7723 -2.8644 21 6 10.1783 -4.1193 -0.3556 22 6 9.9518 -4.5714 1.1197 23 1 10.7005 -4.1712 1.8034 24 6 9.9296 -6.1014 1.1089 25 6 9.2912 -6.6359 2.3946 26 6 7.8465 -6.1338 2.4887 27 6 7.8706 -4.6081 2.5827 28 6 8.5471 -3.9957 1.3774 29 1 8.6393 -2.9233 1.5494 30 1 -0.4849 0.8402 0.0004 31 1 3.8751 -0.6798 0.8895 32 1 3.8745 -0.6810 -0.8905 33 1 3.6577 -3.1507 -0.8896 34 1 3.6584 -3.1503 0.8903 35 1 5.9154 -2.1227 0.8883 36 1 5.9140 -2.1233 -0.8916 37 1 9.1671 -6.6385 -3.2819 38 1 10.5130 -3.0827 -0.3953 39 1 10.8925 -4.7739 -0.8552 40 1 9.3437 -6.4459 0.2568 41 1 10.9496 -6.4746 1.0170 42 1 9.8602 -6.2756 3.2517 43 1 9.2993 -7.7257 2.3794 44 1 7.3708 -6.5487 3.3773 45 1 7.2930 -6.4380 1.6002 46 1 8.4104 -4.3143 3.4829 47 1 6.8470 -4.2387 2.6439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262429491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:00 Heat of formation + Delta-G solvation = -164.657712 kcal Electronic energy + Delta-G solvation = -30750.904897 eV Core-core repulsion = 26639.547607 eV Total energy + Delta-G solvation = -4111.357290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33379 -39.40807 -37.08589 -36.19515 -35.78882 -35.07864 -34.83454 -32.66759 -32.23299 -29.99493 -28.78335 -28.37457 -24.73705 -23.68540 -22.87633 -21.86617 -21.44172 -20.49288 -20.04055 -18.49389 -18.26301 -17.54251 -17.07900 -16.80565 -16.06158 -15.99897 -15.65007 -15.44137 -14.85475 -14.56047 -14.30241 -14.24812 -14.17059 -13.83742 -13.12618 -13.03322 -12.92248 -12.67008 -12.38131 -12.30604 -12.18556 -12.07942 -12.00342 -11.89246 -11.79017 -11.72125 -11.56813 -11.34110 -11.06040 -10.97104 -10.84765 -10.77308 -10.43684 -10.22086 -10.12064 -10.04591 -9.89195 -9.71783 -9.30644 -9.15495 -8.60372 -6.09846 -4.09294 0.26945 2.04749 2.49107 2.83762 3.25116 3.32645 3.34512 3.84052 3.99947 4.03304 4.30941 4.38758 4.43834 4.64291 4.76821 4.90230 4.95080 4.96487 5.00684 5.10141 5.17120 5.21957 5.23778 5.31395 5.34231 5.41692 5.44274 5.54354 5.68275 5.72310 5.79818 5.87928 6.05182 6.07663 6.11917 6.18584 6.22542 6.25195 6.36294 6.38305 6.63256 6.64797 7.09711 7.23769 7.69109 7.73386 8.46112 8.94538 9.51066 11.03463 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.003255 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.123591 B = 8599.054711 C = 8962.924610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.619 4.619 12 S 2.611 3.389 13 O -0.948 6.948 14 O -0.935 6.935 15 N -0.990 5.990 16 C 0.165 3.835 17 H 0.114 0.886 18 C 0.467 3.533 19 O -0.484 6.484 20 O -0.517 6.517 21 C -0.117 4.117 22 C -0.091 4.091 23 H 0.102 0.898 24 C -0.135 4.135 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.140 4.140 28 C 0.155 3.845 29 H 0.072 0.928 30 H 0.264 0.736 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.411 0.589 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.414 -9.017 0.853 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.136 4.136 11 C -0.750 4.750 12 S 2.708 3.292 13 O -0.939 6.939 14 O -0.926 6.926 15 N -0.825 5.825 16 C 0.056 3.944 17 H 0.132 0.868 18 C 0.306 3.694 19 O -0.370 6.370 20 O -0.328 6.328 21 C -0.155 4.155 22 C -0.111 4.111 23 H 0.120 0.880 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.148 4.148 27 C -0.178 4.178 28 C 0.050 3.950 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.270 0.730 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 26.547 -9.604 1.104 28.253 hybrid contribution 0.339 1.069 -0.405 1.192 sum 26.886 -8.535 0.700 28.217 Atomic orbital electron populations 1.69914 1.06291 1.26993 1.50620 1.25025 0.94763 0.99172 0.94436 0.86777 0.80326 0.83614 0.78554 1.20196 1.21214 1.19051 1.21129 0.89212 0.94802 1.51431 0.90726 1.19529 0.97367 0.90599 0.96725 1.21315 0.86468 1.03013 1.02805 1.30712 1.09510 1.23670 1.11117 1.05283 0.71431 0.77780 0.74672 1.93575 1.83432 1.74289 1.42560 1.93588 1.80397 1.70954 1.47647 1.58760 1.22647 1.88691 1.12442 1.20797 0.91891 0.92384 0.89312 0.86825 1.23695 0.75613 0.91004 0.79092 1.90713 1.36975 1.43892 1.65381 1.84461 1.70325 1.42735 1.35326 1.22936 0.92770 1.03782 0.96042 1.22465 0.96243 0.96730 0.95645 0.87966 1.21932 1.00804 0.93894 1.00539 1.21592 0.96878 0.99958 0.97050 1.21494 0.95431 0.94524 1.03336 1.21682 1.02560 0.97533 0.96020 1.20927 0.91084 0.99373 0.83637 0.91005 0.92600 0.96127 0.96637 0.91230 0.90768 0.85373 0.85523 0.72982 0.88705 0.89241 0.90083 0.92281 0.92465 0.92377 0.92010 0.90256 0.90895 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.53 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.08 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.91 5.16 -26.72 -0.14 -2.04 16 11 C -0.62 -9.11 6.18 37.16 0.23 -8.88 16 12 S 2.61 39.72 5.12 -107.50 -0.55 39.17 16 13 O -0.95 -17.34 15.19 -65.94 -1.00 -18.34 16 14 O -0.94 -15.98 12.23 -57.54 -0.70 -16.69 16 15 N -0.99 -11.27 2.71 -100.46 -0.27 -11.55 16 16 C 0.17 1.56 3.41 -67.81 -0.23 1.33 16 17 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 18 C 0.47 5.44 5.35 36.00 0.19 5.63 16 19 O -0.48 -7.37 13.43 -25.71 -0.35 -7.72 16 20 O -0.52 -4.47 13.42 -39.25 -0.53 -5.00 16 21 C -0.12 -0.72 5.94 -24.37 -0.14 -0.87 16 22 C -0.09 -0.66 3.63 -88.51 -0.32 -0.98 16 23 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 24 C -0.13 -1.22 4.98 -26.63 -0.13 -1.36 16 25 C -0.12 -1.15 5.90 -26.52 -0.16 -1.31 16 26 C -0.11 -1.36 5.29 -26.67 -0.14 -1.50 16 27 C -0.14 -1.50 4.77 -27.71 -0.13 -1.64 16 28 C 0.16 1.43 2.93 -68.32 -0.20 1.23 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 32 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.41 2.09 9.10 45.56 0.41 2.50 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.49 7.66 -51.93 -0.40 0.09 16 40 H 0.08 0.93 3.80 -51.93 -0.20 0.73 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.23 6.28 -51.92 -0.33 0.90 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.15 5.94 -51.93 -0.31 0.84 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -37.28 366.68 -10.15 -47.43 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.66 Total: 1.53 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.72 Total: -24.10 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.50 Total: -38.48 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.58 Total: -47.74 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.55 Total: 39.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.28 -10.15 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262429491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.223 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds