Wall clock time and date at job start Wed Apr 1 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00511 * 2 1 4 4 H 1.48505 * 109.46998 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47130 * 29.99659 * 3 2 1 6 6 H 1.48498 * 109.47407 * 150.00441 * 3 2 1 7 7 C 1.37878 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00687 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53012 * 109.47034 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.47010 * 180.02562 * 11 10 9 13 13 O 1.42103 * 110.54186 * 73.28536 * 12 11 10 14 14 O 1.42100 * 110.54446 * 296.53682 * 12 11 10 15 15 N 1.65595 * 104.44752 * 184.91156 * 12 11 10 16 16 C 1.47405 * 126.02099 * 261.82528 * 15 12 11 17 17 H 1.08999 * 109.89901 * 62.09665 * 16 15 12 18 18 C 1.50696 * 109.90412 * 300.85950 * 16 15 12 19 19 O 1.20831 * 119.99747 * 348.10898 * 18 16 15 20 20 O 1.34227 * 120.00180 * 168.11557 * 18 16 15 21 21 C 1.54488 * 107.15472 * 181.47155 * 16 15 12 22 22 C 1.55959 * 102.65683 * 22.77682 * 21 16 15 23 23 H 1.09000 * 112.77633 * 203.19532 * 22 21 16 24 24 C 1.53017 * 106.57725 * 79.36624 * 22 21 16 25 25 C 1.53174 * 110.42916 * 197.59842 * 24 22 21 26 26 C 1.53237 * 109.27576 * 60.94506 * 25 24 22 27 27 C 1.52874 * 108.41876 * 297.06470 * 26 25 24 28 28 C 1.46521 * 126.02187 * 81.83364 * 15 12 11 29 29 H 1.09001 * 108.48389 * 270.33998 * 28 15 12 30 30 H 0.97010 * 119.99210 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47082 * 60.00361 * 9 7 2 32 32 H 1.08998 * 109.47565 * 299.99987 * 9 7 2 33 33 H 1.08995 * 109.47162 * 60.00479 * 10 9 7 34 34 H 1.08997 * 109.47474 * 299.99772 * 10 9 7 35 35 H 1.08995 * 109.46747 * 60.00235 * 11 10 9 36 36 H 1.08997 * 109.46812 * 300.00188 * 11 10 9 37 37 H 0.96695 * 117.00348 * 179.97438 * 20 18 16 38 38 H 1.08997 * 110.77460 * 264.47971 * 21 16 15 39 39 H 1.09003 * 110.93144 * 141.13724 * 21 16 15 40 40 H 1.09000 * 109.22950 * 317.18466 * 24 22 21 41 41 H 1.09003 * 109.22715 * 76.55761 * 24 22 21 42 42 H 1.09003 * 109.09342 * 301.13100 * 25 24 22 43 43 H 1.08999 * 109.51727 * 181.01605 * 25 24 22 44 44 H 1.09000 * 109.68067 * 177.33096 * 26 25 24 45 45 H 1.09009 * 109.70609 * 56.81197 * 26 25 24 46 46 H 1.09000 * 109.12169 * 298.76852 * 27 26 25 47 47 H 1.08990 * 109.08186 * 179.64456 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6367 0.0001 11 6 5.5515 -2.6368 -0.0012 12 16 6.1560 -4.3471 -0.0018 13 8 5.9603 -4.9446 -1.2761 14 8 5.7626 -5.0155 1.1889 15 7 7.8001 -4.2042 0.1342 16 6 8.7701 -4.2644 -0.9741 17 1 8.5860 -3.4485 -1.6730 18 6 8.6558 -5.5885 -1.6845 19 8 8.0123 -6.4847 -1.1920 20 8 9.2689 -5.7723 -2.8644 21 6 10.1783 -4.1193 -0.3556 22 6 9.9518 -4.5714 1.1197 23 1 10.7005 -4.1712 1.8034 24 6 9.9296 -6.1014 1.1089 25 6 9.2912 -6.6359 2.3946 26 6 7.8465 -6.1338 2.4887 27 6 7.8706 -4.6081 2.5827 28 6 8.5471 -3.9957 1.3774 29 1 8.6393 -2.9233 1.5494 30 1 -0.4849 0.8402 0.0004 31 1 3.8751 -0.6798 0.8895 32 1 3.8745 -0.6810 -0.8905 33 1 3.6577 -3.1507 -0.8896 34 1 3.6584 -3.1503 0.8903 35 1 5.9154 -2.1227 0.8883 36 1 5.9140 -2.1233 -0.8916 37 1 9.1671 -6.6385 -3.2819 38 1 10.5130 -3.0827 -0.3953 39 1 10.8925 -4.7739 -0.8552 40 1 9.3437 -6.4459 0.2568 41 1 10.9496 -6.4746 1.0170 42 1 9.8602 -6.2756 3.2517 43 1 9.2993 -7.7257 2.3794 44 1 7.3708 -6.5487 3.3773 45 1 7.2930 -6.4380 1.6002 46 1 8.4104 -4.3143 3.4829 47 1 6.8470 -4.2387 2.6439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262429491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:59 Heat of formation + Delta-G solvation = -192.095469 kcal Electronic energy + Delta-G solvation = -30752.094688 eV Core-core repulsion = 26639.547607 eV Total energy + Delta-G solvation = -4112.547080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06706 -40.17902 -38.27593 -37.08286 -36.98192 -36.54321 -35.88191 -34.27755 -33.34867 -30.70923 -30.20320 -29.47536 -25.50178 -25.38977 -23.67470 -22.59488 -22.41367 -21.91402 -20.90889 -19.54479 -19.09235 -18.97240 -18.47139 -17.74085 -17.27040 -17.07219 -16.47150 -16.41782 -16.21291 -15.91735 -15.40675 -15.30705 -15.01926 -14.83648 -14.58712 -14.10029 -13.85171 -13.76385 -13.69136 -13.43427 -13.27771 -13.21504 -13.05501 -12.93551 -12.71794 -12.64719 -12.59923 -12.51387 -12.43479 -12.30548 -11.86573 -11.81593 -11.67888 -11.54709 -11.44210 -11.25210 -11.20800 -10.89667 -10.80270 -10.78920 -10.01161 -8.31173 -6.38034 -0.87628 1.24641 1.36642 1.39830 1.51563 1.57397 2.09285 2.36034 2.89915 2.99106 3.03885 3.35246 3.55304 3.65980 3.81140 3.86699 4.04632 4.11816 4.22624 4.28016 4.31959 4.40044 4.47170 4.53685 4.56097 4.65721 4.68682 4.78150 4.81438 4.88506 4.94259 5.00610 5.05482 5.09719 5.18932 5.28702 5.30251 5.35751 5.41843 5.42950 5.47485 5.59086 5.60311 5.65089 5.79603 6.23063 6.70002 7.00540 7.26756 8.86041 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.003255 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.123591 B = 8599.054711 C = 8962.924610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.548 4.548 8 H 0.026 0.974 9 C -0.002 4.002 10 C -0.102 4.102 11 C -0.608 4.608 12 S 2.619 3.381 13 O -0.989 6.989 14 O -0.967 6.967 15 N -0.986 5.986 16 C 0.152 3.848 17 H 0.140 0.860 18 C 0.460 3.540 19 O -0.532 6.532 20 O -0.509 6.509 21 C -0.104 4.104 22 C -0.084 4.084 23 H 0.139 0.861 24 C -0.139 4.139 25 C -0.114 4.114 26 C -0.115 4.115 27 C -0.143 4.143 28 C 0.143 3.857 29 H 0.111 0.889 30 H 0.268 0.732 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.424 0.576 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.101 0.899 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.389 -5.806 1.115 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.158 1.158 7 C -0.586 4.586 8 H 0.044 0.956 9 C -0.041 4.041 10 C -0.142 4.142 11 C -0.740 4.740 12 S 2.718 3.282 13 O -0.979 6.979 14 O -0.957 6.957 15 N -0.825 5.825 16 C 0.044 3.956 17 H 0.157 0.843 18 C 0.302 3.698 19 O -0.421 6.421 20 O -0.322 6.322 21 C -0.142 4.142 22 C -0.103 4.103 23 H 0.157 0.843 24 C -0.177 4.177 25 C -0.151 4.151 26 C -0.153 4.153 27 C -0.181 4.181 28 C 0.039 3.961 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.285 0.715 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.119 0.881 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.542 -6.425 1.346 32.218 hybrid contribution -1.271 -0.110 -0.501 1.371 sum 30.271 -6.536 0.844 30.980 Atomic orbital electron populations 1.70095 1.08642 1.28409 1.52184 1.26161 0.95738 1.04069 0.93706 0.85560 0.79786 0.77238 0.79489 1.18855 1.21036 1.15771 1.21549 0.92411 0.93240 1.51369 0.95593 1.19491 0.93624 0.93032 0.97934 1.21166 0.90517 1.00741 1.01755 1.30580 1.05290 1.23946 1.14134 1.04633 0.72546 0.77753 0.73248 1.93516 1.84725 1.75453 1.44228 1.93563 1.81745 1.71997 1.48420 1.58342 1.21375 1.88427 1.14311 1.21349 0.93391 0.91579 0.89315 0.84291 1.24377 0.74616 0.91529 0.79282 1.90714 1.39138 1.45636 1.66613 1.84431 1.69553 1.43788 1.34383 1.23035 0.90392 1.06254 0.94523 1.22550 0.95620 0.94820 0.97332 0.84304 1.21969 1.01047 0.95979 0.98661 1.21558 0.95453 0.99299 0.98807 1.21465 0.96638 0.96487 1.00743 1.21713 1.02055 0.95881 0.98498 1.21317 0.91500 1.01547 0.81737 0.87170 0.92369 0.94528 0.94937 0.92691 0.91998 0.82205 0.82684 0.71511 0.84923 0.88367 0.92749 0.90503 0.90081 0.93687 0.93350 0.94297 0.88076 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 3 Si 0.96 42.83 27.47 68.60 1.88 44.72 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.23 -9.28 6.54 99.48 0.65 -8.63 16 7 C -0.55 -32.15 9.66 25.60 0.25 -31.90 16 8 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 9 C 0.00 -0.10 4.04 29.85 0.12 0.02 16 10 C -0.10 -4.05 5.16 30.60 0.16 -3.90 16 11 C -0.61 -16.51 6.18 71.99 0.44 -16.06 16 12 S 2.62 79.73 5.12 -56.49 -0.29 79.44 16 13 O -0.99 -37.38 15.19 -119.61 -1.82 -39.19 16 14 O -0.97 -34.78 12.23 -127.65 -1.56 -36.34 16 15 N -0.99 -20.26 2.71 -471.76 -1.28 -21.54 16 16 C 0.15 2.39 3.41 44.58 0.15 2.55 16 17 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 18 C 0.46 10.31 5.35 71.23 0.38 10.69 16 19 O -0.53 -16.85 13.43 28.60 0.38 -16.46 16 20 O -0.51 -8.12 13.42 -51.39 -0.69 -8.81 16 21 C -0.10 -0.73 5.94 32.12 0.19 -0.54 16 22 C -0.08 -0.81 3.63 -9.43 -0.03 -0.85 16 23 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 24 C -0.14 -2.22 4.98 30.66 0.15 -2.06 16 25 C -0.11 -2.12 5.90 30.73 0.18 -1.94 16 26 C -0.12 -2.92 5.29 30.63 0.16 -2.76 16 27 C -0.14 -2.84 4.77 29.96 0.14 -2.69 16 28 C 0.14 2.10 2.93 44.73 0.13 2.23 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 31 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 32 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 35 H 0.16 3.31 8.14 -2.39 -0.02 3.30 16 36 H 0.16 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.42 4.10 9.10 -74.06 -0.67 3.43 16 38 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.10 0.59 7.66 -2.39 -0.02 0.57 16 40 H 0.05 1.21 3.80 -2.39 -0.01 1.20 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.30 6.28 -2.38 -0.01 1.28 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.07 1.69 5.94 -2.39 -0.01 1.67 16 Total: -1.00 -88.98 366.68 0.08 -88.90 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.25 Total: 16.30 kcal Atomic # 6 Polarization: -49.65 SS G_CDS: 2.89 Total: -46.75 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -0.98 Total: -81.79 kcal Atomic # 8 Polarization: -97.13 SS G_CDS: -3.68 Total: -100.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 16 Polarization: 79.73 SS G_CDS: -0.29 Total: 79.44 kcal Total: -88.98 0.08 -88.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262429491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.194 kcal (2) G-P(sol) polarization free energy of solvation -88.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds