Wall clock time and date at job start Wed Apr 1 2020 03:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29429 * 121.49128 * 2 1 4 4 S 1.69448 * 108.06327 * 179.72362 * 3 2 1 5 5 C 1.72012 * 96.09699 * 0.02562 * 4 3 2 6 6 N 1.38190 * 127.35961 * 179.97438 * 5 4 3 7 7 C 1.46962 * 110.99951 * 123.77533 * 6 5 4 8 8 C 1.53050 * 109.36502 * 176.81256 * 7 6 5 9 9 N 1.46958 * 109.36649 * 58.39889 * 8 7 6 10 10 C 1.46894 * 111.00190 * 176.81447 * 9 8 7 11 11 C 1.53002 * 109.47344 * 189.87768 * 10 9 8 12 12 H 1.09003 * 109.46895 * 303.82738 * 11 10 9 13 13 C 1.47198 * 109.47109 * 63.82269 * 11 10 9 14 14 N 8.99935 * 149.38452 * 125.76276 * 2 1 3 15 15 C 1.53001 * 109.47628 * 183.82512 * 11 10 9 16 16 C 1.50697 * 109.47580 * 174.99889 * 15 11 10 17 17 H 1.07998 * 119.99826 * 0.02562 * 16 15 11 18 18 C 1.37873 * 119.99991 * 179.97438 * 16 15 11 19 19 N 1.31507 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47098 * 120.00331 * 20 18 16 23 23 H 1.48504 * 109.47095 * 240.00579 * 20 18 16 24 24 C 1.46957 * 110.87833 * 300.67953 * 9 8 7 25 25 C 1.46958 * 111.00172 * 359.97415 * 6 5 4 26 26 C 1.39016 * 105.28459 * 359.97438 * 5 4 3 27 27 C 1.43196 * 123.23110 * 180.02562 * 26 5 4 28 28 N 3.52962 * 84.00609 * 179.85155 * 2 1 3 29 29 H 1.09000 * 109.46591 * 90.02780 * 1 2 3 30 30 H 1.09000 * 109.46851 * 210.02132 * 1 2 3 31 31 H 1.08993 * 109.47362 * 330.02863 * 1 2 3 32 32 H 1.09001 * 109.48714 * 296.77317 * 7 6 5 33 33 H 1.08995 * 109.49430 * 56.83859 * 7 6 5 34 34 H 1.08996 * 109.49031 * 298.43177 * 8 7 6 35 35 H 1.08996 * 109.49334 * 178.36325 * 8 7 6 36 36 H 1.09001 * 109.47292 * 309.87243 * 10 9 8 37 37 H 1.08999 * 109.47491 * 69.87675 * 10 9 8 38 38 H 1.09004 * 109.46724 * 294.99905 * 15 11 10 39 39 H 1.08999 * 109.46727 * 54.99202 * 15 11 10 40 40 H 0.96998 * 120.00569 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.49220 * 299.35006 * 24 9 8 42 42 H 1.09003 * 109.49283 * 179.28841 * 24 9 8 43 43 H 1.08996 * 109.48341 * 303.15751 * 25 6 5 44 44 H 1.08996 * 109.48717 * 63.21801 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1832 1.1037 0.0000 4 16 3.8313 0.7102 0.0078 5 6 3.6118 -0.9959 0.0104 6 7 4.5942 -1.9677 0.0161 7 6 4.4279 -2.8781 1.1578 8 6 5.4842 -3.9832 1.0837 9 7 6.8235 -3.3782 1.0869 10 6 7.8677 -4.4113 1.0929 11 6 9.2289 -3.7592 1.3436 12 1 9.4066 -2.9891 0.5928 13 6 9.2419 -3.1501 2.6836 14 7 9.2520 -2.6785 3.7190 15 6 10.3272 -4.8207 1.2552 16 6 11.6758 -4.1600 1.3797 17 1 11.7429 -3.0899 1.5094 18 6 12.8240 -4.9216 1.3292 19 7 12.7423 -6.2247 1.1718 20 14 14.4958 -4.1024 1.4828 21 1 14.3158 -2.6378 1.6499 22 1 15.2091 -4.6509 2.6641 23 1 15.2913 -4.3671 0.2571 24 6 6.9897 -2.4680 -0.0548 25 6 5.9335 -1.3628 0.0193 26 6 2.2351 -1.1882 0.0056 27 6 1.6236 -2.4831 0.0065 28 7 1.1385 -3.5103 0.0091 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 4.5486 -2.3215 2.0872 33 1 3.4333 -3.3229 1.1264 34 1 5.3465 -4.5570 0.1673 35 1 5.3812 -4.6430 1.9452 36 1 7.6600 -5.1334 1.8826 37 1 7.8808 -4.9205 0.1293 38 1 10.2004 -5.5426 2.0620 39 1 10.2608 -5.3331 0.2955 40 1 13.5500 -6.7605 1.1359 41 1 6.8692 -3.0245 -0.9841 42 1 7.9843 -2.0231 -0.0234 43 1 6.0365 -0.7030 -0.8421 44 1 6.0712 -0.7890 0.9357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289379951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:56 Heat of formation + Delta-G solvation = 102.064967 kcal Electronic energy + Delta-G solvation = -26789.215906 eV Core-core repulsion = 23061.319001 eV Total energy + Delta-G solvation = -3727.896905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69703 -39.36500 -37.30942 -36.54035 -35.45741 -33.68233 -32.10708 -31.60406 -30.75502 -30.17513 -28.03077 -26.00960 -24.38123 -23.71588 -22.58980 -21.75192 -21.23094 -20.43808 -19.24621 -17.66833 -16.93771 -16.59250 -16.40582 -15.94360 -15.46128 -15.22588 -14.99958 -14.82747 -14.63689 -14.45619 -14.11143 -13.68292 -13.44590 -13.33551 -13.25865 -12.97892 -12.82812 -12.68233 -12.61711 -12.44182 -12.13110 -11.96233 -11.73453 -11.58434 -11.48373 -11.47932 -11.26308 -11.12593 -10.92689 -10.74333 -10.71428 -10.55793 -10.24216 -9.62857 -9.28561 -9.12132 -8.78053 -8.53240 -8.46865 -6.15649 -4.19185 0.00352 0.65336 1.28065 1.39055 2.38628 2.79929 3.09046 3.24253 3.32980 3.36670 3.57430 3.66693 3.71538 3.76118 4.06701 4.30842 4.35909 4.54372 4.58302 4.77319 4.78595 4.82134 4.88063 4.93063 5.01298 5.06049 5.07508 5.22751 5.25650 5.41031 5.45696 5.52574 5.55810 5.60659 5.70908 5.88541 5.97284 6.05660 6.16562 6.23521 6.37376 6.85546 6.88794 7.21700 7.34569 7.44401 7.79241 8.15822 8.49234 8.85691 9.46882 10.95187 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002203 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.379781 B =12704.683472 C =13346.617992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.183 3.817 3 N -0.476 5.476 4 S 0.287 5.713 5 C 0.083 3.917 6 N -0.438 5.438 7 C 0.059 3.941 8 C 0.056 3.944 9 N -0.544 5.544 10 C 0.063 3.937 11 C 0.011 3.989 12 H 0.100 0.900 13 C 0.254 3.746 14 N -0.477 5.477 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.052 3.948 25 C 0.039 3.961 26 C -0.173 4.173 27 C 0.289 3.711 28 N -0.418 5.418 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.054 0.946 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.110 10.856 -5.973 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.004 3.996 3 N -0.296 5.296 4 S 0.439 5.561 5 C -0.152 4.152 6 N -0.152 5.152 7 C -0.067 4.067 8 C -0.072 4.072 9 N -0.269 5.269 10 C -0.065 4.065 11 C -0.011 4.011 12 H 0.118 0.882 13 C -0.063 4.063 14 N -0.154 5.154 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.076 4.076 25 C -0.087 4.087 26 C -0.197 4.197 27 C -0.027 4.027 28 N -0.095 5.095 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.806 11.859 -4.407 25.210 hybrid contribution 0.465 -1.221 -0.581 1.430 sum -21.341 10.638 -4.988 24.361 Atomic orbital electron populations 1.20674 0.85951 1.04353 1.04264 1.20967 0.98690 0.86395 0.93562 1.76408 0.99622 1.25011 1.28603 1.84505 1.10702 0.92828 1.68015 1.24943 0.94433 0.99200 0.96657 1.58165 1.02400 1.14470 1.40195 1.22577 1.00671 0.93775 0.89683 1.22168 0.87631 0.94989 1.02442 1.62236 1.02395 1.19878 1.42356 1.22257 0.89393 0.92771 1.02067 1.19249 0.95856 0.99610 0.86382 0.88205 1.28906 0.90639 0.92199 0.94548 1.81074 1.11033 1.10786 1.12513 1.19181 0.90586 0.92187 0.98814 1.21146 0.90637 0.93907 1.50759 0.92438 1.24955 0.99373 0.94793 0.94861 1.69937 1.28825 1.04619 1.49535 0.86540 0.84024 0.79790 0.77752 1.19658 1.20954 1.20833 1.22252 0.98799 0.93778 0.92817 1.22742 0.84835 0.97571 1.03569 1.15968 0.89630 0.89165 1.24945 1.24366 0.93385 0.91649 0.93345 1.81309 1.07829 1.10178 1.10195 0.89171 0.90148 0.89347 0.91167 0.89397 0.93156 0.88914 0.89807 0.92332 0.95526 0.94411 0.92795 0.92808 0.88044 0.88430 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 9.95 36.01 0.36 -0.15 16 2 C 0.18 1.51 6.75 -83.19 -0.56 0.95 16 3 N -0.48 -4.39 11.95 32.62 0.39 -4.00 16 4 S 0.29 2.31 22.03 -107.50 -2.37 -0.05 16 5 C 0.08 0.73 6.02 -14.40 -0.09 0.65 16 6 N -0.44 -3.95 4.72 -172.29 -0.81 -4.77 16 7 C 0.06 0.55 5.38 -3.76 -0.02 0.53 16 8 C 0.06 0.55 5.61 -3.77 -0.02 0.53 16 9 N -0.54 -6.11 4.38 -234.47 -1.03 -7.14 16 10 C 0.06 0.82 4.33 -3.83 -0.02 0.80 16 11 C 0.01 0.18 2.12 -93.41 -0.20 -0.02 16 12 H 0.10 1.51 6.32 -51.93 -0.33 1.19 16 13 C 0.25 4.91 13.65 -20.70 -0.28 4.62 16 14 N -0.48 -10.18 18.55 42.22 0.78 -9.40 16 15 C 0.03 0.67 4.42 -27.88 -0.12 0.55 16 16 C -0.53 -13.42 8.60 -34.44 -0.30 -13.72 16 17 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.05 0.49 5.41 -3.77 -0.02 0.47 16 25 C 0.04 0.33 4.71 -3.76 -0.02 0.31 16 26 C -0.17 -1.56 5.67 -107.27 -0.61 -2.17 16 27 C 0.29 2.95 12.06 -22.47 -0.27 2.68 16 28 N -0.42 -4.99 18.46 41.84 0.77 -4.21 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.42 7.39 -51.93 -0.38 0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.84 5.66 -51.93 -0.29 0.55 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 37 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.97 6.26 -51.93 -0.33 0.65 16 43 H 0.10 0.64 7.73 -51.93 -0.40 0.24 16 44 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -30.83 382.86 -8.94 -39.77 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -5.90 Total: -5.20 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.26 Total: -2.39 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.84 Total: -53.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.37 Total: -0.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.83 -8.94 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289379951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.838 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds