Wall clock time and date at job start Wed Apr 1 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29429 * 121.49128 * 2 1 4 4 S 1.69448 * 108.06327 * 179.72362 * 3 2 1 5 5 C 1.72012 * 96.09699 * 0.02562 * 4 3 2 6 6 N 1.38190 * 127.35961 * 179.97438 * 5 4 3 7 7 C 1.46962 * 110.99951 * 123.77533 * 6 5 4 8 8 C 1.53050 * 109.36502 * 176.81256 * 7 6 5 9 9 N 1.46958 * 109.36649 * 58.39889 * 8 7 6 10 10 C 1.46894 * 111.00190 * 176.81447 * 9 8 7 11 11 C 1.53002 * 109.47344 * 189.87768 * 10 9 8 12 12 H 1.09003 * 109.46895 * 303.82738 * 11 10 9 13 13 C 1.47198 * 109.47109 * 63.82269 * 11 10 9 14 14 N 8.99935 * 149.38452 * 125.76276 * 2 1 3 15 15 C 1.53001 * 109.47628 * 183.82512 * 11 10 9 16 16 C 1.50697 * 109.47580 * 174.99889 * 15 11 10 17 17 H 1.07998 * 119.99826 * 0.02562 * 16 15 11 18 18 C 1.37873 * 119.99991 * 179.97438 * 16 15 11 19 19 N 1.31507 * 120.00255 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47098 * 120.00331 * 20 18 16 23 23 H 1.48504 * 109.47095 * 240.00579 * 20 18 16 24 24 C 1.46957 * 110.87833 * 300.67953 * 9 8 7 25 25 C 1.46958 * 111.00172 * 359.97415 * 6 5 4 26 26 C 1.39016 * 105.28459 * 359.97438 * 5 4 3 27 27 C 1.43196 * 123.23110 * 180.02562 * 26 5 4 28 28 N 3.52962 * 84.00609 * 179.85155 * 2 1 3 29 29 H 1.09000 * 109.46591 * 90.02780 * 1 2 3 30 30 H 1.09000 * 109.46851 * 210.02132 * 1 2 3 31 31 H 1.08993 * 109.47362 * 330.02863 * 1 2 3 32 32 H 1.09001 * 109.48714 * 296.77317 * 7 6 5 33 33 H 1.08995 * 109.49430 * 56.83859 * 7 6 5 34 34 H 1.08996 * 109.49031 * 298.43177 * 8 7 6 35 35 H 1.08996 * 109.49334 * 178.36325 * 8 7 6 36 36 H 1.09001 * 109.47292 * 309.87243 * 10 9 8 37 37 H 1.08999 * 109.47491 * 69.87675 * 10 9 8 38 38 H 1.09004 * 109.46724 * 294.99905 * 15 11 10 39 39 H 1.08999 * 109.46727 * 54.99202 * 15 11 10 40 40 H 0.96998 * 120.00569 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.49220 * 299.35006 * 24 9 8 42 42 H 1.09003 * 109.49283 * 179.28841 * 24 9 8 43 43 H 1.08996 * 109.48341 * 303.15751 * 25 6 5 44 44 H 1.08996 * 109.48717 * 63.21801 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1832 1.1037 0.0000 4 16 3.8313 0.7102 0.0078 5 6 3.6118 -0.9959 0.0104 6 7 4.5942 -1.9677 0.0161 7 6 4.4279 -2.8781 1.1578 8 6 5.4842 -3.9832 1.0837 9 7 6.8235 -3.3782 1.0869 10 6 7.8677 -4.4113 1.0929 11 6 9.2289 -3.7592 1.3436 12 1 9.4066 -2.9891 0.5928 13 6 9.2419 -3.1501 2.6836 14 7 9.2520 -2.6785 3.7190 15 6 10.3272 -4.8207 1.2552 16 6 11.6758 -4.1600 1.3797 17 1 11.7429 -3.0899 1.5094 18 6 12.8240 -4.9216 1.3292 19 7 12.7423 -6.2247 1.1718 20 14 14.4958 -4.1024 1.4828 21 1 14.3158 -2.6378 1.6499 22 1 15.2091 -4.6509 2.6641 23 1 15.2913 -4.3671 0.2571 24 6 6.9897 -2.4680 -0.0548 25 6 5.9335 -1.3628 0.0193 26 6 2.2351 -1.1882 0.0056 27 6 1.6236 -2.4831 0.0065 28 7 1.1385 -3.5103 0.0091 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 4.5486 -2.3215 2.0872 33 1 3.4333 -3.3229 1.1264 34 1 5.3465 -4.5570 0.1673 35 1 5.3812 -4.6430 1.9452 36 1 7.6600 -5.1334 1.8826 37 1 7.8808 -4.9205 0.1293 38 1 10.2004 -5.5426 2.0620 39 1 10.2608 -5.3331 0.2955 40 1 13.5500 -6.7605 1.1359 41 1 6.8692 -3.0245 -0.9841 42 1 7.9843 -2.0231 -0.0234 43 1 6.0365 -0.7030 -0.8421 44 1 6.0712 -0.7890 0.9357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289379951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:55 Heat of formation + Delta-G solvation = 82.991248 kcal Electronic energy + Delta-G solvation = -26790.043004 eV Core-core repulsion = 23061.319001 eV Total energy + Delta-G solvation = -3728.724003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42011 -40.11857 -38.48081 -37.37574 -36.67758 -35.42258 -33.62149 -32.32163 -31.69265 -30.70663 -29.21901 -27.35605 -25.18825 -24.63991 -23.85197 -23.17872 -21.91081 -21.18855 -19.92163 -18.53801 -18.46277 -18.01308 -17.31399 -16.73192 -16.55566 -16.22984 -15.96206 -15.79445 -15.64981 -15.49571 -14.82816 -14.65146 -14.44069 -14.38304 -14.26701 -14.13804 -13.91064 -13.74292 -13.51539 -13.32380 -13.24825 -13.10784 -13.00387 -12.76166 -12.64346 -12.49058 -12.46148 -12.38577 -12.21684 -12.17776 -11.69474 -11.58172 -11.43643 -11.31256 -11.07967 -10.54399 -9.75158 -9.49097 -9.33849 -8.18380 -6.26033 -0.68086 -0.00526 0.64507 0.72706 1.40009 1.43936 1.53337 1.60355 2.08893 2.11007 2.16210 2.33572 2.42239 2.76763 2.97167 3.17752 3.36169 3.42500 3.58978 3.80052 3.90903 4.05142 4.11070 4.21239 4.27721 4.29906 4.35179 4.39734 4.53206 4.58718 4.68028 4.69056 4.72222 4.80599 4.92293 4.97639 4.99162 5.14733 5.27611 5.37413 5.49342 5.54825 5.63369 5.80557 5.93733 6.02768 6.22087 6.43792 6.85945 6.96771 7.42812 8.92578 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002203 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.379781 B =12704.683472 C =13346.617992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.186 3.814 3 N -0.496 5.496 4 S 0.312 5.688 5 C 0.080 3.920 6 N -0.442 5.442 7 C 0.065 3.935 8 C 0.059 3.941 9 N -0.552 5.552 10 C 0.074 3.926 11 C 0.023 3.977 12 H 0.122 0.878 13 C 0.266 3.734 14 N -0.514 5.514 15 C 0.036 3.964 16 C -0.534 4.534 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.946 3.054 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.049 3.951 25 C 0.041 3.959 26 C -0.182 4.182 27 C 0.307 3.693 28 N -0.452 5.452 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.000 1.000 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.697 12.241 -6.893 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.007 3.993 3 N -0.318 5.318 4 S 0.464 5.536 5 C -0.155 4.155 6 N -0.156 5.156 7 C -0.061 4.061 8 C -0.069 4.069 9 N -0.278 5.278 10 C -0.054 4.054 11 C 0.001 3.999 12 H 0.139 0.861 13 C -0.050 4.050 14 N -0.191 5.191 15 C -0.002 4.002 16 C -0.572 4.572 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.079 4.079 25 C -0.085 4.085 26 C -0.206 4.206 27 C -0.009 4.009 28 N -0.130 5.130 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.404 13.263 -5.335 26.576 hybrid contribution 0.637 -1.608 -0.297 1.754 sum -21.767 11.656 -5.631 25.325 Atomic orbital electron populations 1.20790 0.84290 1.04952 1.05275 1.21236 0.99776 0.85754 0.92514 1.76388 1.00354 1.25539 1.29484 1.84404 1.10092 0.91689 1.67378 1.25017 0.94328 0.99763 0.96418 1.58159 1.02786 1.14669 1.40027 1.22473 1.00208 0.93659 0.89774 1.22156 0.86866 0.95172 1.02691 1.62164 1.02475 1.19565 1.43555 1.22046 0.87922 0.92784 1.02690 1.19191 0.96434 0.98679 0.85587 0.86052 1.29383 0.89522 0.91359 0.94747 1.81078 1.12286 1.12135 1.13631 1.19001 0.90919 0.92776 0.97538 1.21573 0.92314 0.93968 1.49380 0.92599 1.25699 1.02712 0.95336 0.95105 1.70030 1.29583 1.05736 1.51043 0.85676 0.80432 0.78992 0.77661 1.19178 1.21420 1.19967 1.22324 0.99338 0.93815 0.92394 1.22781 0.84029 0.97280 1.04444 1.16065 0.89861 0.88902 1.25818 1.24460 0.92566 0.91526 0.92349 1.81322 1.08925 1.11138 1.11565 0.87876 0.89934 0.88337 0.91396 0.89759 0.92940 0.88682 0.90222 0.90867 0.98136 0.94611 0.92810 0.92179 0.87923 0.86480 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.95 71.24 0.71 -0.16 16 2 C 0.19 2.77 6.75 43.18 0.29 3.07 16 3 N -0.50 -8.34 11.95 -50.70 -0.61 -8.95 16 4 S 0.31 4.45 22.03 -56.49 -1.24 3.20 16 5 C 0.08 1.28 6.02 83.88 0.51 1.78 16 6 N -0.44 -7.17 4.72 -698.99 -3.30 -10.47 16 7 C 0.07 1.12 5.38 86.31 0.46 1.59 16 8 C 0.06 1.07 5.61 86.31 0.48 1.56 16 9 N -0.55 -11.43 4.38 -895.73 -3.92 -15.35 16 10 C 0.07 1.81 4.33 86.30 0.37 2.18 16 11 C 0.02 0.73 2.12 -12.60 -0.03 0.70 16 12 H 0.12 3.41 6.32 -2.39 -0.02 3.39 16 13 C 0.27 10.06 13.65 89.42 1.22 11.28 16 14 N -0.51 -21.67 18.55 20.03 0.37 -21.30 16 15 C 0.04 1.58 4.42 29.85 0.13 1.71 16 16 C -0.53 -26.99 8.60 25.60 0.22 -26.77 16 17 H 0.06 2.79 7.59 -2.91 -0.02 2.76 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.92 -51.76 13.29 21.44 0.28 -51.48 16 20 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.05 0.83 5.41 86.31 0.47 1.29 16 25 C 0.04 0.58 4.71 86.31 0.41 0.99 16 26 C -0.18 -3.04 5.67 -21.58 -0.12 -3.16 16 27 C 0.31 5.97 12.06 88.33 1.07 7.04 16 28 N -0.45 -10.52 18.46 19.00 0.35 -10.17 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.76 7.39 -2.39 -0.02 0.74 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.54 5.66 -2.39 -0.01 1.52 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 36 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 38 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.70 6.26 -2.39 -0.01 1.69 16 43 H 0.12 1.22 7.73 -2.39 -0.02 1.20 16 44 H 0.07 1.08 8.01 -2.39 -0.02 1.06 16 Total: -1.00 -65.20 382.86 1.65 -63.55 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.04 Total: 2.59 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 6.65 Total: 4.10 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -6.82 Total: -117.72 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.24 Total: 3.20 kcal Total: -65.20 1.65 -63.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289379951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.544 kcal (2) G-P(sol) polarization free energy of solvation -65.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds