Wall clock time and date at job start Wed Apr 1 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00640 * 2 1 4 4 C 1.52988 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47593 * 65.00065 * 4 3 2 6 6 C 1.46505 * 120.00080 * 84.99783 * 5 4 3 7 7 C 1.50703 * 109.47064 * 275.00439 * 6 5 4 8 8 C 1.34515 * 125.79060 * 89.99944 * 7 6 5 9 9 C 1.41380 * 106.83832 * 179.97438 * 8 7 6 10 10 C 1.34506 * 106.84493 * 359.97438 * 9 8 7 11 11 O 1.34306 * 125.78568 * 269.69282 * 7 6 5 12 12 S 1.65596 * 120.00265 * 265.00204 * 5 4 3 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 5 4 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 5 4 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 5 4 16 16 C 1.52992 * 109.47390 * 179.97438 * 15 12 5 17 17 C 1.53000 * 109.47497 * 300.00345 * 16 15 12 18 18 C 1.53006 * 109.47130 * 60.00093 * 16 15 12 19 19 C 1.50699 * 109.47248 * 180.02562 * 16 15 12 20 20 H 1.07998 * 119.99937 * 359.97438 * 19 16 15 21 21 C 1.37878 * 120.00222 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00173 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 120.00157 * 179.97438 * 21 19 16 24 24 H 1.48492 * 109.46791 * 60.00176 * 23 21 19 25 25 H 1.48505 * 109.46852 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46747 * 299.99656 * 23 21 19 27 27 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46493 * 300.00107 * 1 2 3 29 29 H 1.08999 * 109.47348 * 59.99478 * 1 2 3 30 30 H 1.09004 * 109.46853 * 59.99830 * 3 2 1 31 31 H 1.09003 * 109.46785 * 300.00584 * 3 2 1 32 32 H 1.08998 * 109.47534 * 304.99678 * 4 3 2 33 33 H 1.09004 * 109.47160 * 185.00429 * 4 3 2 34 34 H 1.09002 * 109.47068 * 35.00407 * 6 5 4 35 35 H 1.09001 * 109.47372 * 155.00495 * 6 5 4 36 36 H 1.07996 * 126.58016 * 0.03378 * 8 7 6 37 37 H 1.08006 * 126.57610 * 179.97438 * 9 8 7 38 38 H 1.08005 * 125.79499 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47162 * 299.99966 * 15 12 5 40 40 H 1.09000 * 109.47109 * 59.99791 * 15 12 5 41 41 H 1.08993 * 109.47283 * 59.99645 * 17 16 15 42 42 H 1.08993 * 109.47560 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.46800 * 299.99704 * 17 16 15 44 44 H 1.09000 * 109.46890 * 59.99978 * 18 16 15 45 45 H 1.08993 * 109.47095 * 180.02562 * 18 16 15 46 46 H 1.08993 * 109.46953 * 299.99928 * 18 16 15 47 47 H 0.96997 * 120.00511 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1810 1.3888 -2.4461 7 6 2.8685 1.5680 -3.1647 8 6 1.9848 2.5599 -2.9532 9 6 0.9041 2.3412 -3.8380 10 6 1.1921 1.2291 -4.5377 11 8 2.3853 0.7676 -4.1289 12 16 4.2413 -1.0689 -1.3191 13 8 3.4057 -1.6016 -0.3006 14 8 4.0349 -1.4024 -2.6849 15 6 5.9892 -1.2618 -0.8739 16 6 6.3612 -2.7456 -0.8991 17 6 5.4924 -3.5064 0.1045 18 6 6.1278 -3.3061 -2.3035 19 6 7.8132 -2.9058 -0.5286 20 1 8.4109 -2.0363 -0.2986 21 6 8.3787 -4.1625 -0.4843 22 7 7.6513 -5.2214 -0.7658 23 14 10.1787 -4.3610 -0.0257 24 1 10.4050 -3.8175 1.3375 25 1 10.5400 -5.8012 -0.0513 26 1 11.0219 -3.6223 -0.9997 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1763 0.0890 34 1 4.5701 2.3636 -2.1517 35 1 4.8939 0.8980 -3.1087 36 1 2.0827 3.3687 -2.2443 37 1 0.0173 2.9503 -3.9338 38 1 0.5711 0.7847 -5.3015 39 1 6.6082 -0.7195 -1.5887 40 1 6.1554 -0.8629 0.1268 41 1 4.4422 -3.3906 -0.1630 42 1 5.7577 -4.5634 0.0869 43 1 5.6587 -3.1071 1.1050 44 1 6.7468 -2.7642 -3.0185 45 1 6.3924 -4.3633 -2.3213 46 1 5.0776 -3.1903 -2.5710 47 1 8.0490 -6.1055 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295153048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:46 Heat of formation + Delta-G solvation = -86.004430 kcal Electronic energy + Delta-G solvation = -30839.483601 eV Core-core repulsion = 26731.536973 eV Total energy + Delta-G solvation = -4107.946628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.49858 -38.06704 -36.42190 -36.22714 -36.04466 -35.01654 -32.92635 -31.61449 -31.09983 -29.15103 -26.58653 -26.28030 -25.65222 -25.24405 -25.14208 -22.43624 -21.73404 -20.60859 -19.40674 -18.39133 -17.50506 -17.30733 -16.60008 -15.98140 -15.94524 -15.61248 -15.45597 -15.23943 -14.74302 -14.63222 -14.52427 -14.03365 -13.63080 -13.11740 -12.90495 -12.85658 -12.74308 -12.66061 -12.43304 -12.19707 -12.08311 -11.88248 -11.76198 -11.38790 -11.14686 -11.03336 -10.95887 -10.92463 -10.81411 -10.59146 -10.31717 -10.17406 -10.04699 -9.93722 -9.59250 -9.55591 -9.39637 -9.07452 -8.62625 -8.40899 -8.36012 -5.99382 -4.11556 0.90674 1.77079 2.55716 3.08208 3.23957 3.28985 3.34455 3.35882 3.93719 4.38248 4.56847 4.68589 4.70469 4.80623 4.98631 5.05625 5.11511 5.16518 5.25295 5.27554 5.37651 5.42622 5.44316 5.45637 5.64179 5.75366 5.76046 5.79912 5.82028 5.85365 6.06208 6.11135 6.44106 6.46847 6.64909 6.76146 6.86230 6.98448 7.11923 7.22396 7.37225 7.37329 7.56293 7.71418 8.03341 8.14612 8.37741 8.86632 9.53519 11.01765 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003583 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.909981 B = 7813.726014 C = 8292.033725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.026 3.974 4 C 0.126 3.874 5 N -0.999 5.999 6 C 0.200 3.800 7 C -0.016 4.016 8 C -0.209 4.209 9 C -0.223 4.223 10 C -0.039 4.039 11 O -0.151 6.151 12 S 2.587 3.413 13 O -0.930 6.930 14 O -0.955 6.955 15 C -0.589 4.589 16 C 0.083 3.917 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.502 4.502 20 H 0.057 0.943 21 C 0.065 3.935 22 N -0.883 5.883 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.199 0.801 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.094 0.906 46 H 0.028 0.972 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 17.330 -1.873 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.053 4.053 4 C 0.001 3.999 5 N -0.832 5.832 6 C 0.074 3.926 7 C -0.069 4.069 8 C -0.229 4.229 9 C -0.243 4.243 10 C -0.108 4.108 11 O -0.045 6.045 12 S 2.684 3.316 13 O -0.921 6.921 14 O -0.945 6.945 15 C -0.722 4.722 16 C 0.081 3.919 17 C -0.220 4.220 18 C -0.220 4.220 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.215 0.785 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.048 0.952 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.112 0.888 46 H 0.047 0.953 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.196 16.072 -2.206 20.296 hybrid contribution 1.047 0.723 0.464 1.354 sum -11.149 16.795 -1.742 20.233 Atomic orbital electron populations 1.22692 0.82343 1.02545 0.98957 1.88254 1.18324 1.25674 1.95098 1.23240 0.94797 0.86590 1.00663 1.21317 0.92723 0.99813 0.86091 1.58127 1.82220 1.27846 1.15044 1.19601 0.89947 0.98010 0.85062 1.23013 0.99140 0.91816 0.92941 1.21470 0.95540 1.01891 1.04010 1.21749 1.01508 1.00183 1.00822 1.24095 0.87072 0.97053 1.02542 1.84220 1.30187 1.46670 1.43421 1.06149 0.78597 0.71695 0.75138 1.93608 1.64024 1.74893 1.59530 1.93561 1.85738 1.80654 1.34535 1.30651 1.21445 1.09913 1.10170 1.17903 0.97045 0.83264 0.93724 1.22254 0.96103 1.05395 0.98241 1.22261 0.97915 1.05530 0.96335 1.20918 0.93526 0.92688 1.47048 0.92435 1.24939 0.97894 0.95896 0.94991 1.69798 1.35629 0.98310 1.48418 0.86613 0.85050 0.77069 0.78982 1.20283 1.21187 1.20291 0.89817 0.94694 0.94824 0.93190 0.91987 0.88871 0.89116 0.87352 0.88123 0.83741 0.83828 0.78456 0.86803 0.86674 0.95209 0.88804 0.94588 0.94606 0.88753 0.95288 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -5.77 8.51 -56.11 -0.48 -6.24 16 3 C 0.03 0.31 6.13 37.15 0.23 0.54 16 4 C 0.13 1.48 5.82 -4.05 -0.02 1.45 16 5 N -1.00 -14.24 2.68 -115.67 -0.31 -14.55 16 6 C 0.20 2.41 5.81 -5.19 -0.03 2.38 16 7 C -0.02 -0.22 6.40 -35.62 -0.23 -0.44 16 8 C -0.21 -2.34 8.36 -39.70 -0.33 -2.67 16 9 C -0.22 -2.41 10.91 -39.71 -0.43 -2.85 16 10 C -0.04 -0.46 12.09 29.41 0.36 -0.11 16 11 O -0.15 -2.36 10.65 5.68 0.06 -2.30 16 12 S 2.59 50.09 4.35 -107.50 -0.47 49.63 16 13 O -0.93 -20.27 12.51 -65.98 -0.83 -21.09 16 14 O -0.95 -20.91 14.61 -57.54 -0.84 -21.75 16 15 C -0.59 -11.74 5.12 37.15 0.19 -11.55 16 16 C 0.08 2.05 0.52 -155.66 -0.08 1.97 16 17 C -0.16 -4.09 7.77 37.16 0.29 -3.80 16 18 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 19 C -0.50 -13.36 8.01 -34.44 -0.28 -13.64 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.74 5.15 -17.82 -0.09 1.65 16 22 N -0.88 -24.45 9.35 55.43 0.52 -23.93 16 23 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.72 4.54 -51.93 -0.24 0.48 16 32 H 0.09 1.15 7.61 -51.93 -0.40 0.75 16 33 H 0.09 0.67 8.00 -51.93 -0.42 0.26 16 34 H 0.11 0.83 8.00 -51.93 -0.42 0.42 16 35 H 0.10 1.24 7.61 -51.93 -0.40 0.84 16 36 H 0.14 1.25 7.80 -52.49 -0.41 0.84 16 37 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.11 2.04 8.14 -51.92 -0.42 1.62 16 40 H 0.11 2.07 8.14 -51.92 -0.42 1.65 16 41 H 0.03 0.72 5.46 -51.93 -0.28 0.44 16 42 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 46 H 0.03 0.70 5.46 -51.93 -0.28 0.42 16 47 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -35.06 378.32 -7.93 -42.98 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.23 Total: 5.17 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 0.97 Total: -29.38 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.21 Total: -38.48 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -2.08 Total: -51.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.47 Total: 49.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.06 -7.93 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295153048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.022 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds