Wall clock time and date at job start Wed Apr 1 2020 04:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00640 * 2 1 4 4 C 1.52988 * 109.47295 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47593 * 65.00065 * 4 3 2 6 6 C 1.46505 * 120.00080 * 84.99783 * 5 4 3 7 7 C 1.50703 * 109.47064 * 275.00439 * 6 5 4 8 8 C 1.34515 * 125.79060 * 89.99944 * 7 6 5 9 9 C 1.41380 * 106.83832 * 179.97438 * 8 7 6 10 10 C 1.34506 * 106.84493 * 359.97438 * 9 8 7 11 11 O 1.34306 * 125.78568 * 269.69282 * 7 6 5 12 12 S 1.65596 * 120.00265 * 265.00204 * 5 4 3 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 5 4 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 5 4 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 5 4 16 16 C 1.52992 * 109.47390 * 179.97438 * 15 12 5 17 17 C 1.53000 * 109.47497 * 300.00345 * 16 15 12 18 18 C 1.53006 * 109.47130 * 60.00093 * 16 15 12 19 19 C 1.50699 * 109.47248 * 180.02562 * 16 15 12 20 20 H 1.07998 * 119.99937 * 359.97438 * 19 16 15 21 21 C 1.37878 * 120.00222 * 180.02562 * 19 16 15 22 22 N 1.31519 * 120.00173 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 120.00157 * 179.97438 * 21 19 16 24 24 H 1.48492 * 109.46791 * 60.00176 * 23 21 19 25 25 H 1.48505 * 109.46852 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46747 * 299.99656 * 23 21 19 27 27 H 1.09000 * 109.47532 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46493 * 300.00107 * 1 2 3 29 29 H 1.08999 * 109.47348 * 59.99478 * 1 2 3 30 30 H 1.09004 * 109.46853 * 59.99830 * 3 2 1 31 31 H 1.09003 * 109.46785 * 300.00584 * 3 2 1 32 32 H 1.08998 * 109.47534 * 304.99678 * 4 3 2 33 33 H 1.09004 * 109.47160 * 185.00429 * 4 3 2 34 34 H 1.09002 * 109.47068 * 35.00407 * 6 5 4 35 35 H 1.09001 * 109.47372 * 155.00495 * 6 5 4 36 36 H 1.07996 * 126.58016 * 0.03378 * 8 7 6 37 37 H 1.08006 * 126.57610 * 179.97438 * 9 8 7 38 38 H 1.08005 * 125.79499 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47162 * 299.99966 * 15 12 5 40 40 H 1.09000 * 109.47109 * 59.99791 * 15 12 5 41 41 H 1.08993 * 109.47283 * 59.99645 * 17 16 15 42 42 H 1.08993 * 109.47560 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.46800 * 299.99704 * 17 16 15 44 44 H 1.09000 * 109.46890 * 59.99978 * 18 16 15 45 45 H 1.08993 * 109.47095 * 180.02562 * 18 16 15 46 46 H 1.08993 * 109.46953 * 299.99928 * 18 16 15 47 47 H 0.96997 * 120.00511 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.1810 1.3888 -2.4461 7 6 2.8685 1.5680 -3.1647 8 6 1.9848 2.5599 -2.9532 9 6 0.9041 2.3412 -3.8380 10 6 1.1921 1.2291 -4.5377 11 8 2.3853 0.7676 -4.1289 12 16 4.2413 -1.0689 -1.3191 13 8 3.4057 -1.6016 -0.3006 14 8 4.0349 -1.4024 -2.6849 15 6 5.9892 -1.2618 -0.8739 16 6 6.3612 -2.7456 -0.8991 17 6 5.4924 -3.5064 0.1045 18 6 6.1278 -3.3061 -2.3035 19 6 7.8132 -2.9058 -0.5286 20 1 8.4109 -2.0363 -0.2986 21 6 8.3787 -4.1625 -0.4843 22 7 7.6513 -5.2214 -0.7658 23 14 10.1787 -4.3610 -0.0257 24 1 10.4050 -3.8175 1.3375 25 1 10.5400 -5.8012 -0.0513 26 1 11.0219 -3.6223 -0.9997 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1763 0.0890 34 1 4.5701 2.3636 -2.1517 35 1 4.8939 0.8980 -3.1087 36 1 2.0827 3.3687 -2.2443 37 1 0.0173 2.9503 -3.9338 38 1 0.5711 0.7847 -5.3015 39 1 6.6082 -0.7195 -1.5887 40 1 6.1554 -0.8629 0.1268 41 1 4.4422 -3.3906 -0.1630 42 1 5.7577 -4.5634 0.0869 43 1 5.6587 -3.1071 1.1050 44 1 6.7468 -2.7642 -3.0185 45 1 6.3924 -4.3633 -2.3213 46 1 5.0776 -3.1903 -2.5710 47 1 8.0490 -6.1055 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295153048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:45 Heat of formation + Delta-G solvation = -109.511895 kcal Electronic energy + Delta-G solvation = -30840.502961 eV Core-core repulsion = 26731.536973 eV Total energy + Delta-G solvation = -4108.965988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.39844 -39.06525 -38.10002 -37.96505 -37.14744 -36.61671 -33.82014 -33.61280 -31.98238 -30.10366 -28.27961 -27.69117 -27.24672 -27.22461 -26.15764 -23.38930 -22.60450 -21.52521 -21.27750 -19.68371 -18.76335 -18.41653 -17.88249 -17.59388 -17.07335 -16.78483 -16.74259 -16.57197 -16.34929 -15.86062 -15.64588 -15.08256 -15.06432 -14.56995 -14.40508 -14.34941 -13.96880 -13.70640 -13.63936 -13.49799 -13.22765 -13.07933 -12.92640 -12.85307 -12.81247 -12.76504 -12.59527 -12.46928 -12.25869 -12.13856 -12.04482 -11.91103 -11.83886 -11.55779 -11.34151 -10.83487 -10.62366 -10.40286 -10.33801 -10.10210 -9.31531 -8.01590 -6.21006 -0.55591 0.84413 1.45940 1.46456 1.53898 1.69739 2.03842 2.27485 2.45325 2.99944 3.17282 3.20296 3.39688 3.74392 3.84896 4.08198 4.16053 4.21458 4.23409 4.26644 4.31718 4.47793 4.51268 4.56516 4.60029 4.61162 4.63764 4.81827 4.86369 4.87402 4.90207 4.95761 5.00718 5.05290 5.08751 5.12920 5.27059 5.38906 5.49588 5.63518 5.64552 5.73492 5.96373 6.11849 6.34727 6.35585 6.46017 6.83778 7.47278 8.98118 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003583 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.909981 B = 7813.726014 C = 8292.033725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.017 3.983 4 C 0.115 3.885 5 N -0.989 5.989 6 C 0.191 3.809 7 C -0.049 4.049 8 C -0.195 4.195 9 C -0.223 4.223 10 C -0.060 4.060 11 O -0.194 6.194 12 S 2.602 3.398 13 O -0.961 6.961 14 O -0.988 6.988 15 C -0.592 4.592 16 C 0.070 3.930 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.519 4.519 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.909 5.909 23 Si 0.956 3.044 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.271 1.271 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.220 0.780 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.069 0.931 46 H 0.029 0.971 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 20.840 -1.080 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.060 4.060 4 C -0.010 4.010 5 N -0.825 5.825 6 C 0.066 3.934 7 C -0.101 4.101 8 C -0.215 4.215 9 C -0.242 4.242 10 C -0.128 4.128 11 O -0.090 6.090 12 S 2.699 3.301 13 O -0.951 6.951 14 O -0.979 6.979 15 C -0.723 4.723 16 C 0.068 3.932 17 C -0.214 4.214 18 C -0.215 4.215 19 C -0.558 4.558 20 H 0.082 0.918 21 C -0.183 4.183 22 N -0.548 5.548 23 Si 0.781 3.219 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.196 1.196 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.108 0.892 36 H 0.193 0.807 37 H 0.188 0.812 38 H 0.236 0.764 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.077 19.588 -1.407 23.055 hybrid contribution 0.905 -0.283 0.188 0.967 sum -11.172 19.305 -1.219 22.338 Atomic orbital electron populations 1.22783 0.81281 1.02443 1.00403 1.88201 1.19877 1.28383 1.95425 1.23497 0.94857 0.85393 1.02293 1.21772 0.92924 1.02031 0.84244 1.57633 1.81899 1.26036 1.16962 1.20044 0.89638 0.99751 0.83976 1.23396 1.00354 0.92709 0.93657 1.21856 0.94474 1.01553 1.03620 1.22153 1.02255 0.99773 1.00023 1.24758 0.86584 0.97919 1.03522 1.84186 1.31725 1.48311 1.44742 1.05304 0.77838 0.73127 0.73789 1.93562 1.64518 1.76796 1.60225 1.93511 1.85924 1.82286 1.36141 1.30571 1.22891 1.06797 1.12089 1.17896 0.96395 0.86310 0.92612 1.22162 0.96353 1.04024 0.98834 1.22177 0.97910 1.04050 0.97352 1.21285 0.94605 0.93000 1.46868 0.91752 1.25719 1.01775 0.95757 0.95060 1.69954 1.37137 0.98560 1.49165 0.85652 0.80424 0.76826 0.78975 1.19510 1.21363 1.19579 0.90899 0.92328 0.94148 0.90395 0.91271 0.89894 0.83756 0.82190 0.89211 0.80670 0.81171 0.76358 0.84923 0.84723 0.95140 0.91297 0.94190 0.94275 0.91215 0.95264 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -12.55 8.51 -129.02 -1.10 -13.65 16 3 C 0.02 0.37 6.13 71.98 0.44 0.81 16 4 C 0.11 2.29 5.82 86.38 0.50 2.80 16 5 N -0.99 -26.07 2.68 -519.86 -1.39 -27.46 16 6 C 0.19 4.12 5.81 85.63 0.50 4.62 16 7 C -0.05 -1.24 6.40 24.83 0.16 -1.08 16 8 C -0.20 -3.72 8.36 22.19 0.19 -3.53 16 9 C -0.22 -4.25 10.91 22.19 0.24 -4.01 16 10 C -0.06 -1.38 12.09 66.97 0.81 -0.57 16 11 O -0.19 -6.04 10.65 -2.58 -0.03 -6.06 16 12 S 2.60 100.35 4.35 -56.49 -0.25 100.10 16 13 O -0.96 -42.37 12.51 -119.58 -1.50 -43.87 16 14 O -0.99 -44.27 14.61 -127.65 -1.86 -46.13 16 15 C -0.59 -23.11 5.12 71.98 0.37 -22.74 16 16 C 0.07 3.49 0.52 -52.93 -0.03 3.46 16 17 C -0.16 -8.06 7.77 71.98 0.56 -7.50 16 18 C -0.16 -8.16 7.78 71.98 0.56 -7.60 16 19 C -0.52 -27.49 8.01 25.60 0.21 -27.28 16 20 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 21 C 0.02 0.87 5.15 84.65 0.44 1.31 16 22 N -0.91 -51.55 9.35 21.45 0.20 -51.35 16 23 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.35 4.54 -2.39 -0.01 1.34 16 32 H 0.08 1.85 7.61 -2.39 -0.02 1.83 16 33 H 0.14 1.31 8.00 -2.39 -0.02 1.30 16 34 H 0.16 1.68 8.00 -2.39 -0.02 1.67 16 35 H 0.09 2.11 7.61 -2.39 -0.02 2.09 16 36 H 0.18 2.11 7.80 -2.91 -0.02 2.09 16 37 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.22 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 40 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 41 H 0.03 1.53 5.46 -2.39 -0.01 1.51 16 42 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 46 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 47 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -79.14 378.32 3.25 -75.88 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.96 Total: 27.42 kcal Atomic # 6 Polarization: -65.60 SS G_CDS: 6.19 Total: -59.41 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.19 Total: -78.81 kcal Atomic # 8 Polarization: -105.23 SS G_CDS: -4.49 Total: -109.71 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 100.35 SS G_CDS: -0.25 Total: 100.10 kcal Total: -79.14 3.25 -75.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295153048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.629 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds