Wall clock time and date at job start Wed Apr 1 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99938 * 2 1 4 4 O 1.20823 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.50008 * 300.07116 * 5 3 2 7 7 C 1.53045 * 109.52282 * 60.15130 * 5 3 2 8 8 C 1.53033 * 109.53765 * 181.33002 * 7 5 3 9 9 C 1.53623 * 109.24361 * 298.51176 * 8 7 5 10 10 N 1.46922 * 108.54311 * 54.85499 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.37057 * 10 9 8 12 12 O 1.42102 * 104.27719 * 153.64872 * 11 10 9 13 13 O 1.42099 * 104.27748 * 25.78889 * 11 10 9 14 14 C 1.81397 * 104.44673 * 269.72075 * 11 10 9 15 15 C 1.53010 * 109.47081 * 184.56304 * 14 11 10 16 16 C 1.50697 * 115.54730 * 294.70057 * 15 14 11 17 17 H 1.08003 * 120.00258 * 99.55716 * 16 15 14 18 18 C 1.37880 * 120.00025 * 279.55927 * 16 15 14 19 19 N 1.31519 * 119.99753 * 5.57874 * 18 16 15 20 20 Si 1.86798 * 120.00211 * 185.57291 * 18 16 15 21 21 H 1.48501 * 109.47331 * 270.00630 * 20 18 16 22 22 H 1.48509 * 109.47034 * 30.00271 * 20 18 16 23 23 H 1.48497 * 109.46975 * 150.00178 * 20 18 16 24 24 C 1.52997 * 117.51611 * 80.39486 * 15 14 11 25 25 C 1.52992 * 117.49786 * 149.02793 * 15 14 11 26 26 C 1.46920 * 118.74018 * 306.09803 * 10 9 8 27 27 H 1.08999 * 109.47033 * 299.99302 * 1 2 3 28 28 H 1.08996 * 109.47519 * 60.00003 * 1 2 3 29 29 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47071 * 299.92992 * 6 5 3 31 31 H 1.09003 * 109.47468 * 59.92952 * 6 5 3 32 32 H 1.09002 * 109.47380 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.45863 * 301.35523 * 7 5 3 34 34 H 1.09000 * 109.45644 * 61.31016 * 7 5 3 35 35 H 1.09001 * 109.49973 * 58.58515 * 8 7 5 36 36 H 1.09006 * 109.49567 * 178.65109 * 8 7 5 37 37 H 1.08998 * 109.73750 * 295.11578 * 9 8 7 38 38 H 1.09005 * 109.66530 * 174.55290 * 9 8 7 39 39 H 1.09000 * 109.47511 * 64.56631 * 14 11 10 40 40 H 1.09006 * 109.47242 * 304.55709 * 14 11 10 41 41 H 0.96993 * 119.99608 * 174.98887 * 19 18 16 42 42 H 1.08996 * 117.49766 * 214.97046 * 24 15 14 43 43 H 1.08998 * 117.50231 * 359.97438 * 24 15 14 44 44 H 1.08993 * 117.50463 * 359.97438 * 25 15 14 45 45 H 1.09003 * 117.49588 * 145.00025 * 25 15 14 46 46 H 1.09001 * 109.58721 * 173.64995 * 26 10 9 47 47 H 1.09006 * 109.58783 * 294.07101 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1136 0.5802 1.2490 7 6 4.1151 0.5845 -1.2502 8 6 5.6445 0.6353 -1.2334 9 6 6.1026 2.1016 -1.2506 10 7 5.4635 2.8039 -0.1294 11 16 6.3735 3.6530 0.9631 12 8 5.4869 4.6453 1.4615 13 8 7.5434 4.0119 0.2409 14 6 6.7699 2.4454 2.2573 15 6 7.5210 3.1432 3.3932 16 6 8.8807 3.6861 3.0361 17 1 9.0016 4.7360 2.8136 18 6 9.9704 2.8424 2.9934 19 7 9.8063 1.5476 3.1559 20 14 11.6796 3.5382 2.7045 21 1 11.9609 3.5710 1.2467 22 1 11.7525 4.9161 3.2537 23 1 12.6843 2.6810 3.3834 24 6 6.6917 3.9287 4.4111 25 6 7.3284 2.5954 4.8086 26 6 4.0013 2.7437 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 -0.0005 30 1 3.7249 1.0741 2.1395 31 1 3.8038 -0.4648 1.2487 32 1 5.2022 0.6371 1.2488 33 1 3.7864 -0.4547 -1.2651 34 1 3.7445 1.0952 -2.1390 35 1 6.0149 0.1465 -0.3323 36 1 6.0352 0.1225 -2.1123 37 1 5.8074 2.5684 -2.1902 38 1 7.1862 2.1487 -1.1414 39 1 7.3952 1.6566 1.8392 40 1 5.8478 2.0115 2.6443 41 1 10.5607 0.9466 3.0538 42 1 7.1297 4.8381 4.8226 43 1 5.6109 3.9489 4.2716 44 1 6.6664 1.7383 4.9309 45 1 8.1852 2.6277 5.4817 46 1 3.6979 3.2147 0.9355 47 1 3.5381 3.2619 -0.8392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416631832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:20 Heat of formation + Delta-G solvation = -134.745545 kcal Electronic energy + Delta-G solvation = -30810.523371 eV Core-core repulsion = 26700.463170 eV Total energy + Delta-G solvation = -4110.060201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06388 -38.71344 -36.78414 -36.61481 -36.32869 -35.11714 -33.43472 -32.06610 -31.74561 -28.35887 -28.04824 -27.13102 -25.48867 -24.55152 -24.11364 -21.55078 -21.23249 -19.82717 -19.28570 -18.23115 -17.54213 -17.28112 -16.62451 -16.52731 -16.35148 -15.60312 -15.12829 -14.75842 -14.68990 -14.52397 -14.19855 -14.11259 -13.80235 -13.54396 -13.22201 -13.13067 -12.82870 -12.62298 -12.23559 -12.02387 -11.93316 -11.83520 -11.52603 -11.51142 -11.33638 -11.27810 -11.05098 -11.01885 -11.00354 -10.94164 -10.89664 -10.61705 -10.51462 -10.44673 -10.26052 -10.10956 -9.70576 -8.98893 -8.84671 -8.59742 -8.08392 -6.15290 -4.25711 0.99825 2.02183 2.45590 3.30384 3.30954 3.35982 3.41094 4.25648 4.36716 4.46378 4.51262 4.63138 4.81069 4.84748 4.88159 4.93708 5.01463 5.08226 5.10796 5.15936 5.21383 5.27429 5.36197 5.54495 5.61055 5.65188 5.70668 5.75584 5.80046 5.85998 5.90450 5.95570 6.01247 6.16289 6.20933 6.25730 6.29538 6.37531 6.60280 6.70119 6.78126 6.96909 7.22602 7.36242 7.55340 7.79418 8.19021 8.79675 9.45699 10.92441 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003782 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.171292 B = 7401.325959 C = 7698.322994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.503 6.503 5 C -0.066 4.066 6 C -0.155 4.155 7 C -0.102 4.102 8 C -0.138 4.138 9 C 0.117 3.883 10 N -1.008 6.008 11 S 2.602 3.398 12 O -0.969 6.969 13 O -0.944 6.944 14 C -0.555 4.555 15 C 0.045 3.955 16 C -0.514 4.514 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.285 1.285 24 C -0.209 4.209 25 C -0.143 4.143 26 C 0.144 3.856 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.263 0.737 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 -7.938 -8.051 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.389 6.389 5 C -0.069 4.069 6 C -0.212 4.212 7 C -0.140 4.140 8 C -0.176 4.176 9 C -0.008 4.008 10 N -0.842 5.842 11 S 2.700 3.300 12 O -0.960 6.960 13 O -0.934 6.934 14 C -0.688 4.688 15 C 0.043 3.957 16 C -0.551 4.551 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.511 5.511 20 Si 0.718 3.282 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.211 1.211 24 C -0.246 4.246 25 C -0.183 4.183 26 C 0.018 3.982 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.134 -6.871 -8.117 17.688 hybrid contribution 0.512 -0.515 0.104 0.733 sum -13.623 -7.385 -8.013 17.445 Atomic orbital electron populations 1.23274 0.76509 1.03626 1.02590 1.86511 1.23203 1.33395 1.83999 1.23654 0.91530 0.81332 0.71866 1.90683 1.67046 1.36300 1.44913 1.20963 0.86460 0.99640 0.99874 1.22118 1.03316 1.01009 0.94711 1.21515 0.96550 1.00844 0.95088 1.22095 0.94651 0.97265 1.03627 1.21522 0.98643 0.91189 0.89485 1.58218 1.14783 1.69892 1.41347 1.05451 0.73193 0.76136 0.75197 1.93499 1.65346 1.55792 1.81331 1.93537 1.48438 1.81220 1.70204 1.30098 1.07436 1.15917 1.15337 1.18274 0.93927 0.97685 0.85844 1.20532 0.89943 0.95405 1.49249 0.91421 1.24934 0.99142 0.94777 0.93359 1.69965 1.31671 1.02094 1.47367 0.86589 0.83474 0.79352 0.78829 1.19979 1.19467 1.21100 1.23175 0.97420 0.96256 1.07792 1.22572 1.01030 0.94074 1.00575 1.21137 0.80237 0.92204 1.04622 0.91834 0.91951 0.88126 0.91747 0.90723 0.89569 0.90327 0.91251 0.90259 0.90127 0.91256 0.88343 0.84551 0.88304 0.92756 0.89532 0.90659 0.91525 0.89638 0.88370 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.69 10.35 -39.26 -0.41 -4.10 16 3 C 0.47 5.83 6.56 36.01 0.24 6.06 16 4 O -0.50 -7.44 15.67 -18.75 -0.29 -7.74 16 5 C -0.07 -0.78 0.71 -155.54 -0.11 -0.89 16 6 C -0.15 -1.75 7.25 37.15 0.27 -1.49 16 7 C -0.10 -0.98 4.65 -26.69 -0.12 -1.11 16 8 C -0.14 -1.38 5.75 -26.39 -0.15 -1.53 16 9 C 0.12 1.51 6.34 -3.49 -0.02 1.49 16 10 N -1.01 -15.56 2.65 -113.28 -0.30 -15.86 16 11 S 2.60 53.00 5.17 -107.50 -0.56 52.44 16 12 O -0.97 -21.62 16.72 -57.54 -0.96 -22.59 16 13 O -0.94 -22.30 16.30 -57.54 -0.94 -23.24 16 14 C -0.55 -11.33 5.15 37.16 0.19 -11.14 16 15 C 0.05 1.08 1.26 -155.66 -0.20 0.88 16 16 C -0.51 -13.87 8.10 -34.44 -0.28 -14.15 16 17 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 18 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 19 N -0.88 -23.41 13.10 55.43 0.73 -22.68 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C -0.21 -4.55 9.96 -26.73 -0.27 -4.82 16 25 C -0.14 -3.19 9.68 -26.73 -0.26 -3.45 16 26 C 0.14 2.04 4.34 -3.72 -0.02 2.03 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.09 1.03 4.32 -51.93 -0.22 0.81 16 33 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.39 7.09 -51.93 -0.37 1.02 16 39 H 0.14 2.86 8.14 -51.92 -0.42 2.43 16 40 H 0.10 1.70 6.67 -51.92 -0.35 1.36 16 41 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 46 H 0.10 1.50 7.10 -51.93 -0.37 1.13 16 47 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -33.02 386.04 -9.20 -42.22 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.51 Total: 4.30 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 0.24 Total: -24.67 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.43 Total: -38.54 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -2.60 Total: -57.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 53.00 SS G_CDS: -0.56 Total: 52.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.02 -9.20 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416631832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.528 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds