Wall clock time and date at job start Wed Apr 1 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99938 * 2 1 4 4 O 1.20823 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.50008 * 300.07116 * 5 3 2 7 7 C 1.53045 * 109.52282 * 60.15130 * 5 3 2 8 8 C 1.53033 * 109.53765 * 181.33002 * 7 5 3 9 9 C 1.53623 * 109.24361 * 298.51176 * 8 7 5 10 10 N 1.46922 * 108.54311 * 54.85499 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.37057 * 10 9 8 12 12 O 1.42102 * 104.27719 * 153.64872 * 11 10 9 13 13 O 1.42099 * 104.27748 * 25.78889 * 11 10 9 14 14 C 1.81397 * 104.44673 * 269.72075 * 11 10 9 15 15 C 1.53010 * 109.47081 * 184.56304 * 14 11 10 16 16 C 1.50697 * 115.54730 * 294.70057 * 15 14 11 17 17 H 1.08003 * 120.00258 * 99.55716 * 16 15 14 18 18 C 1.37880 * 120.00025 * 279.55927 * 16 15 14 19 19 N 1.31519 * 119.99753 * 5.57874 * 18 16 15 20 20 Si 1.86798 * 120.00211 * 185.57291 * 18 16 15 21 21 H 1.48501 * 109.47331 * 270.00630 * 20 18 16 22 22 H 1.48509 * 109.47034 * 30.00271 * 20 18 16 23 23 H 1.48497 * 109.46975 * 150.00178 * 20 18 16 24 24 C 1.52997 * 117.51611 * 80.39486 * 15 14 11 25 25 C 1.52992 * 117.49786 * 149.02793 * 15 14 11 26 26 C 1.46920 * 118.74018 * 306.09803 * 10 9 8 27 27 H 1.08999 * 109.47033 * 299.99302 * 1 2 3 28 28 H 1.08996 * 109.47519 * 60.00003 * 1 2 3 29 29 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47071 * 299.92992 * 6 5 3 31 31 H 1.09003 * 109.47468 * 59.92952 * 6 5 3 32 32 H 1.09002 * 109.47380 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.45863 * 301.35523 * 7 5 3 34 34 H 1.09000 * 109.45644 * 61.31016 * 7 5 3 35 35 H 1.09001 * 109.49973 * 58.58515 * 8 7 5 36 36 H 1.09006 * 109.49567 * 178.65109 * 8 7 5 37 37 H 1.08998 * 109.73750 * 295.11578 * 9 8 7 38 38 H 1.09005 * 109.66530 * 174.55290 * 9 8 7 39 39 H 1.09000 * 109.47511 * 64.56631 * 14 11 10 40 40 H 1.09006 * 109.47242 * 304.55709 * 14 11 10 41 41 H 0.96993 * 119.99608 * 174.98887 * 19 18 16 42 42 H 1.08996 * 117.49766 * 214.97046 * 24 15 14 43 43 H 1.08998 * 117.50231 * 359.97438 * 24 15 14 44 44 H 1.08993 * 117.50463 * 359.97438 * 25 15 14 45 45 H 1.09003 * 117.49588 * 145.00025 * 25 15 14 46 46 H 1.09001 * 109.58721 * 173.64995 * 26 10 9 47 47 H 1.09006 * 109.58783 * 294.07101 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1136 0.5802 1.2490 7 6 4.1151 0.5845 -1.2502 8 6 5.6445 0.6353 -1.2334 9 6 6.1026 2.1016 -1.2506 10 7 5.4635 2.8039 -0.1294 11 16 6.3735 3.6530 0.9631 12 8 5.4869 4.6453 1.4615 13 8 7.5434 4.0119 0.2409 14 6 6.7699 2.4454 2.2573 15 6 7.5210 3.1432 3.3932 16 6 8.8807 3.6861 3.0361 17 1 9.0016 4.7360 2.8136 18 6 9.9704 2.8424 2.9934 19 7 9.8063 1.5476 3.1559 20 14 11.6796 3.5382 2.7045 21 1 11.9609 3.5710 1.2467 22 1 11.7525 4.9161 3.2537 23 1 12.6843 2.6810 3.3834 24 6 6.6917 3.9287 4.4111 25 6 7.3284 2.5954 4.8086 26 6 4.0013 2.7437 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0278 -0.0005 30 1 3.7249 1.0741 2.1395 31 1 3.8038 -0.4648 1.2487 32 1 5.2022 0.6371 1.2488 33 1 3.7864 -0.4547 -1.2651 34 1 3.7445 1.0952 -2.1390 35 1 6.0149 0.1465 -0.3323 36 1 6.0352 0.1225 -2.1123 37 1 5.8074 2.5684 -2.1902 38 1 7.1862 2.1487 -1.1414 39 1 7.3952 1.6566 1.8392 40 1 5.8478 2.0115 2.6443 41 1 10.5607 0.9466 3.0538 42 1 7.1297 4.8381 4.8226 43 1 5.6109 3.9489 4.2716 44 1 6.6664 1.7383 4.9309 45 1 8.1852 2.6277 5.4817 46 1 3.6979 3.2147 0.9355 47 1 3.5381 3.2619 -0.8392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416631832.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:20 Heat of formation + Delta-G solvation = -155.536203 kcal Electronic energy + Delta-G solvation = -30811.424922 eV Core-core repulsion = 26700.463170 eV Total energy + Delta-G solvation = -4110.961752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98558 -39.67256 -38.58135 -38.05805 -37.50577 -36.83413 -34.50534 -34.08218 -32.69717 -29.96873 -28.73082 -28.14737 -27.44621 -25.62178 -25.03631 -23.00280 -22.48439 -21.40716 -20.61734 -19.46421 -18.84209 -18.36115 -18.26923 -17.55311 -17.38186 -17.05462 -16.80477 -16.59257 -15.73812 -15.65764 -15.64034 -15.15540 -15.02981 -14.84633 -14.57267 -14.08799 -13.84638 -13.77210 -13.66738 -13.41559 -13.13242 -13.11742 -13.01760 -12.90540 -12.87032 -12.84835 -12.69456 -12.42660 -12.30587 -12.24324 -12.11846 -11.97940 -11.86917 -11.77586 -11.53835 -11.39556 -11.18490 -10.87266 -10.55418 -10.16989 -9.76195 -8.17827 -6.32282 -0.58740 1.09736 1.39624 1.42460 1.50260 1.56285 1.96959 2.41148 2.97123 3.08471 3.27294 3.33839 3.40285 3.60026 3.70039 3.84779 4.00396 4.03721 4.16651 4.23866 4.28291 4.33813 4.36202 4.48523 4.50103 4.57541 4.61987 4.70923 4.74124 4.78850 4.81782 4.83753 4.89374 4.96194 5.01467 5.09495 5.17340 5.20391 5.22432 5.32725 5.44443 5.46586 5.57609 5.63554 5.73539 6.23530 6.66387 6.72601 7.39903 8.89223 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003782 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.171292 B = 7401.325959 C = 7698.322994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.480 3.520 4 O -0.535 6.535 5 C -0.063 4.063 6 C -0.158 4.158 7 C -0.098 4.098 8 C -0.131 4.131 9 C 0.105 3.895 10 N -0.998 5.998 11 S 2.611 3.389 12 O -0.995 6.995 13 O -0.985 6.985 14 C -0.546 4.546 15 C 0.014 3.986 16 C -0.535 4.535 17 H 0.045 0.955 18 C 0.048 3.952 19 N -0.888 5.888 20 Si 0.932 3.068 21 H -0.276 1.276 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.202 4.202 25 C -0.137 4.137 26 C 0.140 3.860 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.497 -10.181 -8.882 20.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.323 3.677 4 O -0.424 6.424 5 C -0.066 4.066 6 C -0.215 4.215 7 C -0.135 4.135 8 C -0.170 4.170 9 C -0.019 4.019 10 N -0.835 5.835 11 S 2.710 3.290 12 O -0.986 6.986 13 O -0.975 6.975 14 C -0.679 4.679 15 C 0.011 3.989 16 C -0.572 4.572 17 H 0.063 0.937 18 C -0.156 4.156 19 N -0.524 5.524 20 Si 0.757 3.243 21 H -0.201 1.201 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.239 4.239 25 C -0.176 4.176 26 C 0.014 3.986 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.381 -9.128 -8.940 19.995 hybrid contribution 0.810 0.174 0.339 0.895 sum -14.571 -8.954 -8.601 19.143 Atomic orbital electron populations 1.23580 0.74830 1.05795 1.02493 1.86493 1.24788 1.32071 1.83379 1.23669 0.91594 0.81422 0.71030 1.90678 1.67727 1.37431 1.46568 1.20890 0.86466 0.97878 1.01355 1.22166 1.02815 1.02235 0.94319 1.21552 0.95900 1.01939 0.94108 1.22089 0.95068 0.94925 1.04898 1.21833 0.97744 0.93301 0.89006 1.57761 1.15093 1.69812 1.40874 1.04820 0.72561 0.76245 0.75327 1.93455 1.65645 1.57411 1.82060 1.93478 1.50539 1.82308 1.71154 1.29940 1.08257 1.15303 1.14381 1.18406 0.93641 0.99393 0.87427 1.20671 0.92141 0.94607 1.49809 0.93676 1.25442 1.01492 0.95220 0.93426 1.69993 1.32402 1.02384 1.47615 0.85953 0.80834 0.78903 0.78592 1.20132 1.19752 1.19706 1.23218 0.98319 0.95918 1.06460 1.22538 1.00831 0.95124 0.99083 1.21229 0.78968 0.94404 1.04021 0.92257 0.91831 0.84835 0.92239 0.88618 0.90244 0.88114 0.90399 0.90513 0.87293 0.89502 0.89979 0.85151 0.85248 0.92437 0.90057 0.88638 0.89184 0.91371 0.89946 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.32 10.35 -51.42 -0.53 -6.85 16 3 C 0.48 10.82 6.56 71.24 0.47 11.29 16 4 O -0.53 -15.29 15.67 21.97 0.34 -14.95 16 5 C -0.06 -1.34 0.71 -52.85 -0.04 -1.38 16 6 C -0.16 -3.23 7.25 71.98 0.52 -2.71 16 7 C -0.10 -1.55 4.65 30.62 0.14 -1.40 16 8 C -0.13 -2.26 5.75 30.81 0.18 -2.08 16 9 C 0.11 2.59 6.34 86.51 0.55 3.14 16 10 N -1.00 -30.26 2.65 -512.30 -1.36 -31.62 16 11 S 2.61 107.74 5.17 -56.49 -0.29 107.45 16 12 O -1.00 -45.14 16.72 -127.65 -2.13 -47.27 16 13 O -0.98 -47.93 16.30 -127.65 -2.08 -50.02 16 14 C -0.55 -22.12 5.15 71.99 0.37 -21.74 16 15 C 0.01 0.65 1.26 -52.93 -0.07 0.58 16 16 C -0.54 -29.46 8.10 25.60 0.21 -29.25 16 17 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 18 C 0.05 2.56 5.42 84.65 0.46 3.02 16 19 N -0.89 -47.36 13.10 21.45 0.28 -47.08 16 20 Si 0.93 43.49 29.54 68.60 2.03 45.52 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C -0.20 -8.73 9.96 30.60 0.30 -8.42 16 25 C -0.14 -6.00 9.68 30.59 0.30 -5.70 16 26 C 0.14 3.83 4.34 86.36 0.37 4.21 16 27 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 28 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 29 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 32 H 0.08 1.74 4.32 -2.39 -0.01 1.73 16 33 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.40 6.33 -2.39 -0.02 1.38 16 36 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.30 7.09 -2.38 -0.02 2.29 16 39 H 0.13 5.45 8.14 -2.39 -0.02 5.43 16 40 H 0.13 4.30 6.67 -2.39 -0.02 4.28 16 41 H 0.27 13.47 8.32 -92.71 -0.77 12.70 16 42 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 44 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 45 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.08 2.52 7.10 -2.39 -0.02 2.50 16 47 H 0.08 2.19 7.96 -2.38 -0.02 2.17 16 Total: -1.00 -71.98 386.04 2.18 -69.80 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.96 Total: 23.95 kcal Atomic # 6 Polarization: -53.90 SS G_CDS: 4.96 Total: -48.93 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.08 Total: -78.70 kcal Atomic # 8 Polarization: -114.68 SS G_CDS: -4.40 Total: -119.08 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 107.74 SS G_CDS: -0.29 Total: 107.45 kcal Total: -71.98 2.18 -69.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416631832.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.737 kcal (2) G-P(sol) polarization free energy of solvation -71.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds