Wall clock time and date at job start Wed Apr 1 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86811 * 120.00146 * 2 1 4 4 H 1.48505 * 109.46928 * 240.00463 * 3 2 1 5 5 H 1.48504 * 109.46675 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47285 * 120.00218 * 3 2 1 7 7 C 1.38811 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00114 * 191.50388 * 7 2 1 9 9 N 1.36934 * 120.00034 * 11.23477 * 7 2 1 10 10 C 1.46969 * 120.59231 * 32.60846 * 9 7 2 11 11 C 1.53810 * 108.39632 * 124.76217 * 10 9 7 12 12 N 1.46961 * 108.58011 * 49.63575 * 11 10 9 13 13 C 1.34786 * 120.59107 * 124.62348 * 12 11 10 14 14 O 1.21626 * 119.99487 * 190.65761 * 13 12 11 15 15 C 1.47147 * 120.00273 * 10.66137 * 13 12 11 16 16 C 1.37074 * 127.21070 * 27.59754 * 15 13 12 17 17 N 1.33310 * 106.37306 * 179.84885 * 16 15 13 18 18 N 1.28501 * 109.49841 * 0.43153 * 17 16 15 19 19 N 1.28718 * 110.66779 * 359.72573 * 18 17 16 20 20 C 1.40084 * 126.05837 * 179.97438 * 19 18 17 21 21 C 1.38902 * 120.05369 * 303.65145 * 20 19 18 22 22 C 1.38098 * 119.97584 * 179.97438 * 21 20 19 23 23 C 1.38264 * 120.09916 * 359.97438 * 22 21 20 24 24 C 1.38490 * 120.11291 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.99187 * 180.02562 * 24 23 22 26 26 C 1.38355 * 120.01740 * 359.76190 * 24 23 22 27 27 C 1.46965 * 118.81600 * 304.64596 * 12 11 10 28 28 C 1.46961 * 120.59356 * 212.89131 * 9 7 2 29 29 H 0.97008 * 120.00545 * 4.98764 * 1 2 3 30 30 H 1.09003 * 109.60629 * 244.54486 * 10 9 7 31 31 H 1.09000 * 109.61154 * 5.05023 * 10 9 7 32 32 H 1.08998 * 109.74103 * 289.84284 * 11 10 9 33 33 H 1.09005 * 109.52715 * 169.30075 * 11 10 9 34 34 H 1.08002 * 126.81041 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.01133 * 359.97438 * 21 20 19 36 36 H 1.08004 * 119.94759 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.94521 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.05015 * 180.27531 * 26 24 23 39 39 H 1.08998 * 109.60805 * 295.48292 * 27 12 11 40 40 H 1.08994 * 109.61168 * 174.96961 * 27 12 11 41 41 H 1.08995 * 109.61457 * 354.94429 * 28 9 7 42 42 H 1.09002 * 109.60943 * 115.45817 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0740 -1.2114 0.1871 9 7 1.3452 -2.3768 -0.2300 10 6 0.1829 -2.4144 -1.1287 11 6 0.4433 -3.4717 -2.2150 12 7 0.8754 -4.7160 -1.5634 13 6 0.2202 -5.8720 -1.7895 14 8 0.4574 -6.8493 -1.1054 15 6 -0.7819 -5.9518 -2.8641 16 6 -0.8234 -5.2093 -4.0156 17 7 -1.8973 -5.6212 -4.6897 18 7 -2.4962 -6.5411 -4.0218 19 7 -1.8745 -6.7810 -2.9205 20 6 -2.2470 -7.7211 -1.9512 21 6 -3.5103 -7.6646 -1.3765 22 6 -3.8761 -8.5926 -0.4215 23 6 -2.9867 -9.5787 -0.0364 24 6 -1.7261 -9.6387 -0.6068 25 9 -0.8592 -10.6037 -0.2292 26 6 -1.3563 -8.7141 -1.5673 27 6 2.0342 -4.6774 -0.6603 28 6 1.7772 -3.6211 0.4217 29 1 -0.4851 0.8369 -0.0730 30 1 -0.7093 -2.6804 -0.5618 31 1 0.0470 -1.4372 -1.5921 32 1 1.2246 -3.1216 -2.8897 33 1 -0.4740 -3.6516 -2.7756 34 1 -0.1237 -4.4441 -4.3178 35 1 -4.2063 -6.8951 -1.6765 36 1 -4.8583 -8.5479 0.0254 37 1 -3.2755 -10.3034 0.7104 38 1 -0.3750 -8.7631 -2.0157 39 1 2.9288 -4.4132 -1.2243 40 1 2.1675 -5.6536 -0.1943 41 1 2.6945 -3.4412 0.9823 42 1 0.9959 -3.9712 1.0963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447508757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:15 Heat of formation + Delta-G solvation = 101.597136 kcal Electronic energy + Delta-G solvation = -30361.880608 eV Core-core repulsion = 26067.750241 eV Total energy + Delta-G solvation = -4294.130368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.16181 -43.65709 -39.67415 -39.43658 -36.99062 -34.86907 -34.06121 -32.28020 -31.24577 -30.84895 -30.23299 -30.13444 -27.25061 -25.04521 -24.21221 -23.62392 -23.19832 -22.79154 -21.84530 -20.70196 -19.61028 -18.29710 -17.54153 -17.26350 -16.78449 -16.33030 -16.26520 -16.04209 -15.84246 -15.76318 -14.93570 -14.86841 -14.59789 -14.14619 -13.86039 -13.67235 -13.55442 -13.45522 -13.39150 -12.89863 -12.59757 -12.48607 -12.32703 -11.88156 -11.67340 -11.40665 -11.39304 -10.92812 -10.85529 -10.80541 -10.61387 -10.36133 -10.23053 -10.04390 -9.89310 -9.47041 -9.31588 -9.11333 -8.69187 -8.47107 -6.78921 -5.90838 -3.46307 0.29389 0.77381 1.02868 1.77716 2.16912 2.91126 3.04709 3.14067 3.30382 3.36813 3.37047 3.87555 4.19186 4.32965 4.38138 4.48006 4.52497 4.59724 4.76405 4.83154 5.05717 5.11018 5.18722 5.25797 5.55481 5.60723 5.63265 5.69043 5.74789 5.77472 5.79156 5.86550 5.94867 6.00691 6.17497 6.20523 6.25921 6.52890 6.65368 6.75259 7.05459 7.32990 7.55012 7.65535 8.06752 8.18502 8.29209 9.03799 9.63893 10.22375 11.13923 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.003070 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.626884 B = 9119.084504 C = 9734.891880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.008 3.992 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.590 5.590 10 C 0.161 3.839 11 C 0.062 3.938 12 N -0.574 5.574 13 C 0.583 3.417 14 O -0.542 6.542 15 C -0.047 4.047 16 C 0.003 3.997 17 N -0.263 5.263 18 N -0.055 5.055 19 N -0.220 5.220 20 C 0.133 3.867 21 C -0.097 4.097 22 C -0.085 4.085 23 C -0.132 4.132 24 C 0.110 3.890 25 F -0.130 7.130 26 C -0.093 4.093 27 C 0.098 3.902 28 C 0.131 3.869 29 H 0.257 0.743 30 H 0.024 0.976 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.208 0.792 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -16.014 -3.550 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.034 3.966 11 C -0.062 4.062 12 N -0.305 5.305 13 C 0.368 3.632 14 O -0.421 6.421 15 C -0.180 4.180 16 C -0.155 4.155 17 N -0.127 5.127 18 N -0.033 5.033 19 N -0.011 5.011 20 C 0.043 3.957 21 C -0.117 4.117 22 C -0.104 4.104 23 C -0.151 4.151 24 C 0.090 3.910 25 F -0.108 7.108 26 C -0.114 4.114 27 C -0.025 4.025 28 C 0.004 3.996 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.345 -16.712 -3.996 18.317 hybrid contribution 1.457 1.154 0.681 1.980 sum -4.888 -15.558 -3.315 16.641 Atomic orbital electron populations 1.69972 1.05341 1.26313 1.52939 1.25201 0.95352 0.98636 0.99928 0.86329 0.78881 0.83020 0.78245 1.20826 1.21531 1.20736 1.19167 0.90962 0.83859 1.44946 0.91530 1.43953 1.33935 1.04014 1.49362 1.21251 0.89152 0.96876 0.89271 1.23288 0.99688 0.84931 0.98248 1.47788 1.30471 1.07167 1.45124 1.16712 0.80572 0.84007 0.81913 1.90786 1.66450 1.36302 1.48526 1.22260 0.95236 0.98863 1.01615 1.24158 0.98502 1.01334 0.91532 1.74915 1.06920 1.07046 1.23791 1.78401 1.19165 1.13561 0.92198 1.44621 1.17075 1.24926 1.14492 1.17068 0.95520 0.90777 0.92301 1.21168 0.94395 1.00090 0.96035 1.20875 1.00108 0.93253 0.96151 1.21381 0.92261 1.00459 1.00984 1.17244 0.88348 0.88520 0.96894 1.91543 1.68766 1.60557 1.89960 1.21062 1.00569 0.92272 0.97530 1.22357 0.86178 1.01377 0.92577 1.21322 0.98841 0.87057 0.92405 0.93333 0.95787 0.87977 0.90841 0.90202 0.77517 0.84061 0.83452 0.83695 0.83064 0.91178 0.89662 0.91176 0.95735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 11.14 55.49 0.62 -24.02 16 2 C 0.01 0.21 5.03 -17.44 -0.09 0.13 16 3 Si 0.91 20.46 29.57 -169.99 -5.03 15.44 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.61 9.56 -15.06 -0.14 -6.76 16 8 H 0.07 1.66 7.86 -52.48 -0.41 1.24 16 9 N -0.59 -13.64 2.95 -171.76 -0.51 -14.15 16 10 C 0.16 3.48 5.48 -3.36 -0.02 3.46 16 11 C 0.06 1.03 5.37 -3.37 -0.02 1.01 16 12 N -0.57 -9.60 2.95 -173.59 -0.51 -10.11 16 13 C 0.58 9.70 7.50 -12.64 -0.09 9.60 16 14 O -0.54 -9.77 13.09 5.25 0.07 -9.70 16 15 C -0.05 -0.72 6.27 -82.24 -0.52 -1.24 16 16 C 0.00 0.04 9.66 -17.33 -0.17 -0.13 16 17 N -0.26 -4.00 12.34 30.49 0.38 -3.63 16 18 N -0.05 -0.83 13.06 60.35 0.79 -0.04 16 19 N -0.22 -3.26 3.42 -7.21 -0.02 -3.28 16 20 C 0.13 1.77 5.80 -83.63 -0.49 1.29 16 21 C -0.10 -1.04 9.94 -39.39 -0.39 -1.43 16 22 C -0.09 -0.70 10.04 -39.62 -0.40 -1.10 16 23 C -0.13 -1.16 10.02 -39.48 -0.40 -1.55 16 24 C 0.11 1.27 7.30 -39.45 -0.29 0.98 16 25 F -0.13 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.09 -1.23 7.80 -39.33 -0.31 -1.53 16 27 C 0.10 1.64 6.60 -3.59 -0.02 1.62 16 28 C 0.13 2.57 6.67 -3.60 -0.02 2.55 16 29 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 2.44 6.13 -51.93 -0.32 2.12 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.18 4.44 -51.93 -0.23 0.95 16 34 H 0.21 2.32 6.58 -52.49 -0.35 1.97 16 35 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.15 2.13 7.09 -52.49 -0.37 1.76 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.37 7.01 -51.93 -0.36 1.00 16 41 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.30 352.25 -6.78 -37.08 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -4.55 Total: 1.75 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.36 Total: 6.90 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.74 Total: -55.23 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.30 -6.78 -37.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447508757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.676 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds