Wall clock time and date at job start Wed Apr 1 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86811 * 120.00146 * 2 1 4 4 H 1.48505 * 109.46928 * 240.00463 * 3 2 1 5 5 H 1.48504 * 109.46675 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47285 * 120.00218 * 3 2 1 7 7 C 1.38811 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00114 * 191.50388 * 7 2 1 9 9 N 1.36934 * 120.00034 * 11.23477 * 7 2 1 10 10 C 1.46969 * 120.59231 * 32.60846 * 9 7 2 11 11 C 1.53810 * 108.39632 * 124.76217 * 10 9 7 12 12 N 1.46961 * 108.58011 * 49.63575 * 11 10 9 13 13 C 1.34786 * 120.59107 * 124.62348 * 12 11 10 14 14 O 1.21626 * 119.99487 * 190.65761 * 13 12 11 15 15 C 1.47147 * 120.00273 * 10.66137 * 13 12 11 16 16 C 1.37074 * 127.21070 * 27.59754 * 15 13 12 17 17 N 1.33310 * 106.37306 * 179.84885 * 16 15 13 18 18 N 1.28501 * 109.49841 * 0.43153 * 17 16 15 19 19 N 1.28718 * 110.66779 * 359.72573 * 18 17 16 20 20 C 1.40084 * 126.05837 * 179.97438 * 19 18 17 21 21 C 1.38902 * 120.05369 * 303.65145 * 20 19 18 22 22 C 1.38098 * 119.97584 * 179.97438 * 21 20 19 23 23 C 1.38264 * 120.09916 * 359.97438 * 22 21 20 24 24 C 1.38490 * 120.11291 * 0.02562 * 23 22 21 25 25 F 1.35100 * 119.99187 * 180.02562 * 24 23 22 26 26 C 1.38355 * 120.01740 * 359.76190 * 24 23 22 27 27 C 1.46965 * 118.81600 * 304.64596 * 12 11 10 28 28 C 1.46961 * 120.59356 * 212.89131 * 9 7 2 29 29 H 0.97008 * 120.00545 * 4.98764 * 1 2 3 30 30 H 1.09003 * 109.60629 * 244.54486 * 10 9 7 31 31 H 1.09000 * 109.61154 * 5.05023 * 10 9 7 32 32 H 1.08998 * 109.74103 * 289.84284 * 11 10 9 33 33 H 1.09005 * 109.52715 * 169.30075 * 11 10 9 34 34 H 1.08002 * 126.81041 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.01133 * 359.97438 * 21 20 19 36 36 H 1.08004 * 119.94759 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.94521 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.05015 * 180.27531 * 26 24 23 39 39 H 1.08998 * 109.60805 * 295.48292 * 27 12 11 40 40 H 1.08994 * 109.61168 * 174.96961 * 27 12 11 41 41 H 1.08995 * 109.61457 * 354.94429 * 28 9 7 42 42 H 1.09002 * 109.60943 * 115.45817 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0740 -1.2114 0.1871 9 7 1.3452 -2.3768 -0.2300 10 6 0.1829 -2.4144 -1.1287 11 6 0.4433 -3.4717 -2.2150 12 7 0.8754 -4.7160 -1.5634 13 6 0.2202 -5.8720 -1.7895 14 8 0.4574 -6.8493 -1.1054 15 6 -0.7819 -5.9518 -2.8641 16 6 -0.8234 -5.2093 -4.0156 17 7 -1.8973 -5.6212 -4.6897 18 7 -2.4962 -6.5411 -4.0218 19 7 -1.8745 -6.7810 -2.9205 20 6 -2.2470 -7.7211 -1.9512 21 6 -3.5103 -7.6646 -1.3765 22 6 -3.8761 -8.5926 -0.4215 23 6 -2.9867 -9.5787 -0.0364 24 6 -1.7261 -9.6387 -0.6068 25 9 -0.8592 -10.6037 -0.2292 26 6 -1.3563 -8.7141 -1.5673 27 6 2.0342 -4.6774 -0.6603 28 6 1.7772 -3.6211 0.4217 29 1 -0.4851 0.8369 -0.0730 30 1 -0.7093 -2.6804 -0.5618 31 1 0.0470 -1.4372 -1.5921 32 1 1.2246 -3.1216 -2.8897 33 1 -0.4740 -3.6516 -2.7756 34 1 -0.1237 -4.4441 -4.3178 35 1 -4.2063 -6.8951 -1.6765 36 1 -4.8583 -8.5479 0.0254 37 1 -3.2755 -10.3034 0.7104 38 1 -0.3750 -8.7631 -2.0157 39 1 2.9288 -4.4132 -1.2243 40 1 2.1675 -5.6536 -0.1943 41 1 2.6945 -3.4412 0.9823 42 1 0.9959 -3.9712 1.0963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447508757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:14 Heat of formation + Delta-G solvation = 83.676530 kcal Electronic energy + Delta-G solvation = -30362.657704 eV Core-core repulsion = 26067.750241 eV Total energy + Delta-G solvation = -4294.907463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.05996 -44.78647 -41.04396 -40.29791 -38.51842 -36.03425 -35.54675 -33.75141 -32.60976 -31.96687 -31.60472 -31.12181 -28.87616 -26.35656 -25.52940 -24.80145 -24.57796 -23.93417 -23.01733 -22.03593 -20.89415 -19.59688 -18.93586 -18.30335 -17.92617 -17.53073 -17.34828 -17.12564 -17.06668 -16.74664 -16.65244 -16.17236 -15.71751 -15.49826 -15.24562 -15.14395 -14.99266 -14.85703 -14.45255 -14.06628 -13.81293 -13.57906 -13.29690 -13.25846 -13.03676 -12.73833 -12.64257 -12.52438 -12.46129 -12.26407 -12.05232 -12.02035 -11.82866 -11.69398 -11.30161 -10.70529 -10.57235 -10.20827 -9.97791 -9.93131 -8.65294 -7.84830 -5.44021 -0.68067 -0.07053 0.01193 0.70256 1.02270 1.52045 1.52695 1.59492 1.64965 1.85756 2.24320 2.51956 2.92993 3.08149 3.29189 3.31682 3.53522 3.57828 3.67344 3.71258 3.83276 3.96853 4.08973 4.15848 4.20997 4.23180 4.34952 4.53292 4.57385 4.71290 4.72189 4.77021 4.80083 4.83589 5.01186 5.03449 5.05453 5.19376 5.23888 5.43876 5.57357 5.64382 5.64849 6.18671 6.37696 6.76422 7.01783 7.12033 7.77082 8.32232 9.16703 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.003070 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.626884 B = 9119.084504 C = 9734.891880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.041 4.041 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.606 5.606 10 C 0.167 3.833 11 C 0.081 3.919 12 N -0.578 5.578 13 C 0.588 3.412 14 O -0.557 6.557 15 C -0.067 4.067 16 C 0.015 3.985 17 N -0.279 5.279 18 N -0.061 5.061 19 N -0.214 5.214 20 C 0.101 3.899 21 C -0.101 4.101 22 C -0.070 4.070 23 C -0.116 4.116 24 C 0.094 3.906 25 F -0.138 7.138 26 C -0.110 4.110 27 C 0.110 3.890 28 C 0.131 3.869 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.149 0.851 36 H 0.190 0.810 37 H 0.180 0.820 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -16.833 -3.550 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.238 4.238 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.205 1.205 7 C -0.396 4.396 8 H 0.089 0.911 9 N -0.330 5.330 10 C 0.041 3.959 11 C -0.043 4.043 12 N -0.309 5.309 13 C 0.374 3.626 14 O -0.436 6.436 15 C -0.200 4.200 16 C -0.143 4.143 17 N -0.142 5.142 18 N -0.040 5.040 19 N -0.005 5.005 20 C 0.012 3.988 21 C -0.121 4.121 22 C -0.088 4.088 23 C -0.135 4.135 24 C 0.074 3.926 25 F -0.116 7.116 26 C -0.131 4.131 27 C -0.013 4.013 28 C 0.004 3.996 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.167 0.833 36 H 0.207 0.793 37 H 0.197 0.803 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -6.610 -17.566 -4.008 19.192 hybrid contribution 1.483 1.293 0.775 2.114 sum -5.127 -16.274 -3.233 17.366 Atomic orbital electron populations 1.70131 1.06685 1.26495 1.54608 1.25898 0.95986 1.01505 1.00366 0.85351 0.77510 0.79163 0.78406 1.19872 1.22370 1.20474 1.19512 0.91413 0.84824 1.43806 0.91051 1.44206 1.33998 1.04500 1.50277 1.21044 0.87735 0.97254 0.89892 1.23048 1.01357 0.83367 0.96503 1.47777 1.30594 1.07213 1.45346 1.16791 0.80361 0.83596 0.81849 1.90783 1.66816 1.36824 1.49217 1.22183 0.95803 1.00061 1.01923 1.24568 0.98155 1.01016 0.90602 1.74911 1.07536 1.07518 1.24206 1.78358 1.19501 1.13745 0.92398 1.44772 1.16655 1.24668 1.14440 1.17419 0.96882 0.91281 0.93253 1.21462 0.93392 1.00909 0.96327 1.21373 1.01478 0.91459 0.94463 1.21805 0.90665 1.00652 1.00370 1.17495 0.89472 0.88383 0.97258 1.91519 1.69298 1.60781 1.90026 1.20956 0.99990 0.93451 0.98713 1.22203 0.86750 1.00471 0.91886 1.21395 0.98410 0.86579 0.93181 0.93957 0.98969 0.90420 0.88865 0.88309 0.74989 0.83284 0.79268 0.80287 0.85094 0.89482 0.88905 0.90361 0.97614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.06 11.14 21.65 0.24 -51.82 16 2 C -0.04 -2.16 5.03 84.86 0.43 -1.74 16 3 Si 0.97 42.11 29.57 68.60 2.03 44.14 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.27 -13.47 9.56 84.03 0.80 -12.67 16 8 H 0.07 3.49 7.86 -2.91 -0.02 3.47 16 9 N -0.61 -28.11 2.95 -697.34 -2.05 -30.16 16 10 C 0.17 7.32 5.48 86.56 0.47 7.79 16 11 C 0.08 2.58 5.37 86.56 0.46 3.05 16 12 N -0.58 -18.73 2.95 -821.35 -2.42 -21.15 16 13 C 0.59 19.24 7.50 86.58 0.65 19.89 16 14 O -0.56 -20.06 13.09 -4.11 -0.05 -20.12 16 15 C -0.07 -2.02 6.27 40.36 0.25 -1.76 16 16 C 0.02 0.40 9.66 84.19 0.81 1.22 16 17 N -0.28 -8.25 12.34 -57.46 -0.71 -8.96 16 18 N -0.06 -1.85 13.06 37.02 0.48 -1.37 16 19 N -0.21 -6.29 3.42 -176.74 -0.60 -6.89 16 20 C 0.10 2.66 5.80 38.12 0.22 2.88 16 21 C -0.10 -2.00 9.94 22.40 0.22 -1.78 16 22 C -0.07 -0.91 10.04 22.24 0.22 -0.69 16 23 C -0.12 -1.71 10.02 22.34 0.22 -1.48 16 24 C 0.09 2.08 7.30 22.36 0.16 2.25 16 25 F -0.14 -3.28 17.27 44.97 0.78 -2.51 16 26 C -0.11 -2.92 7.80 22.43 0.18 -2.74 16 27 C 0.11 3.53 6.60 86.42 0.57 4.10 16 28 C 0.13 5.11 6.67 86.42 0.58 5.68 16 29 H 0.25 13.68 8.32 -92.70 -0.77 12.91 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.08 3.79 6.13 -2.39 -0.01 3.78 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.10 2.80 4.44 -2.38 -0.01 2.79 16 34 H 0.23 4.66 6.58 -2.91 -0.02 4.64 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.13 3.90 7.09 -2.91 -0.02 3.88 16 39 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.09 2.87 7.01 -2.39 -0.02 2.85 16 41 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -67.17 352.25 5.03 -62.14 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.08 Total: 12.70 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.26 Total: 24.00 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -5.06 Total: -120.35 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -67.17 5.03 -62.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447508757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.817 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds