Wall clock time and date at job start Wed Apr 1 2020 03:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 119.99799 * 2 1 4 4 N 1.46505 * 109.47156 * 124.99920 * 3 2 1 5 5 C 1.46502 * 119.99405 * 274.64099 * 4 3 2 6 6 C 1.50700 * 109.47550 * 269.99736 * 5 4 3 7 7 H 1.08000 * 119.99458 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00440 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00238 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47112 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46925 * 120.00320 * 10 8 6 13 13 H 1.48499 * 109.47201 * 240.00485 * 10 8 6 14 14 C 1.34770 * 120.00394 * 94.64259 * 4 3 2 15 15 O 1.21595 * 120.00072 * 4.97578 * 14 4 3 16 16 C 1.47540 * 120.00207 * 184.97018 * 14 4 3 17 17 C 1.39773 * 120.10443 * 303.58147 * 16 14 4 18 18 C 1.37656 * 119.94600 * 180.02562 * 17 16 14 19 19 C 1.39112 * 120.14993 * 0.02562 * 18 17 16 20 20 N 1.39982 * 119.89394 * 180.02562 * 19 18 17 21 21 N 1.40603 * 127.39443 * 324.68406 * 20 19 18 22 22 N 1.28945 * 106.65144 * 179.83220 * 21 20 19 23 23 N 1.28417 * 110.21779 * 0.44297 * 22 21 20 24 24 C 1.30720 * 110.65386 * 359.71188 * 23 22 21 25 25 C 1.50695 * 126.36883 * 179.97438 * 24 23 22 26 26 C 1.38860 * 120.21009 * 0.02562 * 19 18 17 27 27 C 1.38105 * 120.05426 * 359.97438 * 26 19 18 28 28 F 1.35101 * 120.07781 * 179.97438 * 27 26 19 29 29 H 1.08005 * 120.00125 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00477 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00477 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47536 * 4.99471 * 3 2 1 33 33 H 1.08997 * 109.46901 * 244.99213 * 3 2 1 34 34 H 1.08996 * 109.47679 * 30.00413 * 5 4 3 35 35 H 1.09005 * 109.47011 * 149.99916 * 5 4 3 36 36 H 0.96992 * 120.00161 * 179.97438 * 9 8 6 37 37 H 1.08000 * 120.02597 * 0.04503 * 17 16 14 38 38 H 1.07995 * 119.92306 * 179.72666 * 18 17 16 39 39 H 1.09000 * 109.46935 * 270.02149 * 25 24 23 40 40 H 1.08999 * 109.47376 * 30.02053 * 25 24 23 41 41 H 1.09002 * 109.47578 * 150.02044 * 25 24 23 42 42 H 1.08008 * 119.97178 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5301 1.7697 2.4505 6 6 2.7227 3.2585 2.5821 7 1 3.1475 3.8224 1.7648 8 6 2.3557 3.9010 3.7455 9 7 1.8379 3.2144 4.7406 10 14 2.5938 5.7466 3.9083 11 1 3.1897 6.2811 2.6576 12 1 1.2797 6.3960 4.1470 13 1 3.5006 6.0299 5.0497 14 6 4.2758 0.9541 0.9589 15 8 4.6838 0.6776 -0.1526 16 6 5.1843 0.8759 2.1188 17 6 5.3834 1.9965 2.9301 18 6 6.2323 1.9201 4.0111 19 6 6.8930 0.7300 4.2979 20 7 7.7546 0.6582 5.3988 21 7 8.5965 1.6707 5.8918 22 7 9.2067 1.1781 6.9153 23 7 8.8409 -0.0379 7.1073 24 6 7.9600 -0.4011 6.2124 25 6 7.2971 -1.7503 6.1073 26 6 6.7007 -0.3868 3.4955 27 6 5.8510 -0.3197 2.4088 28 9 5.6640 -1.4059 1.6275 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 1.4731 1.5288 2.5626 35 1 3.1031 1.2594 3.2247 36 1 1.5801 3.6663 5.5592 37 1 4.8715 2.9215 2.7092 38 1 6.3893 2.7875 4.6351 39 1 7.8950 -2.4000 5.4681 40 1 7.2148 -2.1930 7.0999 41 1 6.3021 -1.6339 5.6777 42 1 7.2154 -1.3090 3.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451969324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:24 Heat of formation + Delta-G solvation = 94.704185 kcal Electronic energy + Delta-G solvation = -30221.326666 eV Core-core repulsion = 25926.897398 eV Total energy + Delta-G solvation = -4294.429268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.94855 -43.32384 -40.00865 -38.60807 -35.71191 -35.25777 -33.65238 -33.43916 -32.38035 -30.89716 -30.39486 -28.98347 -27.77309 -26.25698 -24.72695 -23.51142 -23.23627 -22.14302 -21.66250 -20.11483 -19.11802 -18.75103 -17.25602 -16.99961 -16.63195 -16.36095 -16.14244 -15.92262 -15.44744 -15.18945 -15.10225 -14.63484 -14.38768 -14.21562 -13.95709 -13.59984 -13.49403 -13.20875 -12.98741 -12.91250 -12.64478 -12.60298 -12.34592 -12.18196 -11.76714 -11.65371 -11.42953 -11.27190 -11.15463 -11.05355 -11.00127 -10.86906 -10.40071 -10.30988 -9.96876 -9.59429 -9.13628 -9.02074 -8.81666 -8.67254 -8.01160 -6.41437 -4.50515 0.18175 1.05348 1.23222 1.59370 2.11057 2.42966 2.92251 3.07438 3.18792 3.20673 3.41932 3.67607 3.74232 3.98452 4.13364 4.30449 4.53109 4.67103 4.78778 4.85380 4.91478 4.96626 5.07541 5.15201 5.24045 5.26716 5.37654 5.42381 5.56712 5.67073 5.85240 5.89515 6.02230 6.08039 6.20404 6.28269 6.42451 6.49113 6.72237 6.81533 6.90288 6.99662 7.29128 7.51918 7.79757 8.00924 8.28515 8.50263 8.66958 9.16968 10.64176 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.004381 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.055644 B = 6388.976375 C = 8447.443955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.142 3.858 4 N -0.580 5.580 5 C 0.232 3.768 6 C -0.549 4.549 7 H 0.067 0.933 8 C 0.072 3.928 9 N -0.879 5.879 10 Si 0.889 3.111 11 H -0.269 1.269 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.559 3.441 15 O -0.553 6.553 16 C -0.132 4.132 17 C -0.014 4.014 18 C -0.108 4.108 19 C 0.158 3.842 20 N -0.325 5.325 21 N -0.072 5.072 22 N -0.038 5.038 23 N -0.333 5.333 24 C 0.254 3.746 25 C -0.086 4.086 26 C -0.171 4.171 27 C 0.157 3.843 28 F -0.120 7.120 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.268 0.732 37 H 0.185 0.815 38 H 0.146 0.854 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -8.542 -0.992 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.179 4.179 3 C 0.019 3.981 4 N -0.309 5.309 5 C 0.113 3.887 6 C -0.587 4.587 7 H 0.085 0.915 8 C -0.133 4.133 9 N -0.515 5.515 10 Si 0.716 3.284 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.205 1.205 14 C 0.346 3.654 15 O -0.433 6.433 16 C -0.137 4.137 17 C -0.033 4.033 18 C -0.128 4.128 19 C 0.066 3.934 20 N -0.116 5.116 21 N -0.056 5.056 22 N -0.033 5.033 23 N -0.184 5.184 24 C -0.022 4.022 25 C -0.146 4.146 26 C -0.192 4.192 27 C 0.136 3.864 28 F -0.099 7.099 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.202 0.798 38 H 0.164 0.836 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.875 -7.769 -0.719 9.200 hybrid contribution -0.710 0.412 -0.201 0.845 sum 4.165 -7.358 -0.920 8.505 Atomic orbital electron populations 1.23789 0.95732 1.01696 1.01236 1.23338 0.96141 0.99111 0.99271 1.20493 0.92156 0.95066 0.90370 1.48154 1.07894 1.62043 1.12814 1.19576 0.96722 0.95106 0.77334 1.21492 1.43612 0.92596 1.01032 0.91495 1.24940 0.94339 0.98583 0.95473 1.69921 1.40273 1.36194 1.05112 0.86562 0.78443 0.84794 0.78618 1.19286 1.20561 1.20490 1.17875 0.82382 0.77718 0.87439 1.90751 1.76263 1.51446 1.24865 1.20226 1.00567 0.93901 0.98995 1.22120 0.91466 1.00234 0.89464 1.21069 0.96099 0.96562 0.99051 1.17207 0.93084 0.96111 0.86974 1.48807 1.30245 1.10316 1.22256 1.82745 1.04017 1.10096 1.08742 1.78020 1.15483 1.02106 1.07653 1.74446 1.14294 1.06686 1.22988 1.25901 0.94960 0.93610 0.87742 1.20718 1.00671 0.86775 1.06433 1.20590 1.03302 0.99410 0.95928 1.17068 0.96496 0.83134 0.89678 1.91560 1.93626 1.51899 1.72767 0.88780 0.88336 0.87785 0.89541 0.89508 0.94067 0.94264 0.92228 0.79817 0.83586 0.87945 0.87338 0.88462 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 14.32 29.02 0.42 -2.06 16 2 C -0.16 -2.42 9.84 -36.02 -0.35 -2.77 16 3 C 0.14 2.40 5.93 -5.19 -0.03 2.37 16 4 N -0.58 -11.13 2.44 -177.66 -0.43 -11.56 16 5 C 0.23 4.90 4.73 -5.19 -0.02 4.88 16 6 C -0.55 -12.34 6.55 -34.44 -0.23 -12.57 16 7 H 0.07 1.52 7.76 -52.49 -0.41 1.12 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.88 -21.82 13.29 55.43 0.74 -21.09 16 10 Si 0.89 18.53 29.54 -169.99 -5.02 13.51 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 14 C 0.56 10.94 6.84 -12.47 -0.09 10.86 16 15 O -0.55 -11.91 16.44 5.28 0.09 -11.82 16 16 C -0.13 -2.31 4.63 -104.89 -0.49 -2.80 16 17 C -0.01 -0.24 7.78 -39.22 -0.31 -0.55 16 18 C -0.11 -1.65 9.79 -39.47 -0.39 -2.04 16 19 C 0.16 2.23 6.35 -83.58 -0.53 1.70 16 20 N -0.33 -4.64 3.77 -7.95 -0.03 -4.67 16 21 N -0.07 -1.16 13.75 60.35 0.83 -0.33 16 22 N -0.04 -0.62 13.39 60.35 0.81 0.19 16 23 N -0.33 -4.89 12.15 32.76 0.40 -4.50 16 24 C 0.25 3.15 7.97 -155.15 -1.24 1.91 16 25 C -0.09 -0.64 8.73 36.00 0.31 -0.32 16 26 C -0.17 -2.17 8.37 -39.40 -0.33 -2.50 16 27 C 0.16 2.41 7.27 -38.99 -0.28 2.13 16 28 F -0.12 -1.91 16.71 2.25 0.04 -1.87 16 29 H 0.09 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 31 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.09 1.42 7.76 -51.93 -0.40 1.02 16 33 H 0.09 1.47 7.23 -51.93 -0.38 1.10 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.04 0.86 6.14 -51.93 -0.32 0.54 16 36 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 37 H 0.19 3.40 5.19 -52.49 -0.27 3.13 16 38 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.10 0.52 7.83 -51.93 -0.41 0.12 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.69 7.02 -51.93 -0.36 0.33 16 42 H 0.15 1.40 6.24 -52.48 -0.33 1.07 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -28.02 369.06 -5.20 -33.23 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.53 Total: 3.51 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.65 Total: -0.18 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 2.31 Total: -41.95 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.02 -5.20 -33.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451969324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.930 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds