Wall clock time and date at job start Wed Apr 1 2020 03:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 119.99799 * 2 1 4 4 N 1.46505 * 109.47156 * 124.99920 * 3 2 1 5 5 C 1.46502 * 119.99405 * 274.64099 * 4 3 2 6 6 C 1.50700 * 109.47550 * 269.99736 * 5 4 3 7 7 H 1.08000 * 119.99458 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00440 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99811 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00238 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47112 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46925 * 120.00320 * 10 8 6 13 13 H 1.48499 * 109.47201 * 240.00485 * 10 8 6 14 14 C 1.34770 * 120.00394 * 94.64259 * 4 3 2 15 15 O 1.21595 * 120.00072 * 4.97578 * 14 4 3 16 16 C 1.47540 * 120.00207 * 184.97018 * 14 4 3 17 17 C 1.39773 * 120.10443 * 303.58147 * 16 14 4 18 18 C 1.37656 * 119.94600 * 180.02562 * 17 16 14 19 19 C 1.39112 * 120.14993 * 0.02562 * 18 17 16 20 20 N 1.39982 * 119.89394 * 180.02562 * 19 18 17 21 21 N 1.40603 * 127.39443 * 324.68406 * 20 19 18 22 22 N 1.28945 * 106.65144 * 179.83220 * 21 20 19 23 23 N 1.28417 * 110.21779 * 0.44297 * 22 21 20 24 24 C 1.30720 * 110.65386 * 359.71188 * 23 22 21 25 25 C 1.50695 * 126.36883 * 179.97438 * 24 23 22 26 26 C 1.38860 * 120.21009 * 0.02562 * 19 18 17 27 27 C 1.38105 * 120.05426 * 359.97438 * 26 19 18 28 28 F 1.35101 * 120.07781 * 179.97438 * 27 26 19 29 29 H 1.08005 * 120.00125 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00477 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00477 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47536 * 4.99471 * 3 2 1 33 33 H 1.08997 * 109.46901 * 244.99213 * 3 2 1 34 34 H 1.08996 * 109.47679 * 30.00413 * 5 4 3 35 35 H 1.09005 * 109.47011 * 149.99916 * 5 4 3 36 36 H 0.96992 * 120.00161 * 179.97438 * 9 8 6 37 37 H 1.08000 * 120.02597 * 0.04503 * 17 16 14 38 38 H 1.07995 * 119.92306 * 179.72666 * 18 17 16 39 39 H 1.09000 * 109.46935 * 270.02149 * 25 24 23 40 40 H 1.08999 * 109.47376 * 30.02053 * 25 24 23 41 41 H 1.09002 * 109.47578 * 150.02044 * 25 24 23 42 42 H 1.08008 * 119.97178 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5301 1.7697 2.4505 6 6 2.7227 3.2585 2.5821 7 1 3.1475 3.8224 1.7648 8 6 2.3557 3.9010 3.7455 9 7 1.8379 3.2144 4.7406 10 14 2.5938 5.7466 3.9083 11 1 3.1897 6.2811 2.6576 12 1 1.2797 6.3960 4.1470 13 1 3.5006 6.0299 5.0497 14 6 4.2758 0.9541 0.9589 15 8 4.6838 0.6776 -0.1526 16 6 5.1843 0.8759 2.1188 17 6 5.3834 1.9965 2.9301 18 6 6.2323 1.9201 4.0111 19 6 6.8930 0.7300 4.2979 20 7 7.7546 0.6582 5.3988 21 7 8.5965 1.6707 5.8918 22 7 9.2067 1.1781 6.9153 23 7 8.8409 -0.0379 7.1073 24 6 7.9600 -0.4011 6.2124 25 6 7.2971 -1.7503 6.1073 26 6 6.7007 -0.3868 3.4955 27 6 5.8510 -0.3197 2.4088 28 9 5.6640 -1.4059 1.6275 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9313 34 1 1.4731 1.5288 2.5626 35 1 3.1031 1.2594 3.2247 36 1 1.5801 3.6663 5.5592 37 1 4.8715 2.9215 2.7092 38 1 6.3893 2.7875 4.6351 39 1 7.8950 -2.4000 5.4681 40 1 7.2148 -2.1930 7.0999 41 1 6.3021 -1.6339 5.6777 42 1 7.2154 -1.3090 3.7219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451969324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:24 Heat of formation + Delta-G solvation = 80.280187 kcal Electronic energy + Delta-G solvation = -30221.952138 eV Core-core repulsion = 25926.897398 eV Total energy + Delta-G solvation = -4295.054740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.18215 -44.42741 -41.40808 -39.93683 -37.23482 -36.44163 -35.14228 -34.46387 -33.93286 -32.10062 -31.60553 -29.84159 -29.45921 -27.57466 -25.99384 -24.92441 -24.67854 -23.37431 -22.73239 -21.38878 -20.45609 -19.92674 -18.76263 -18.35374 -18.18446 -17.59718 -17.48412 -17.18895 -16.71662 -16.56019 -16.13727 -16.09767 -15.85245 -15.38873 -15.03525 -14.83930 -14.54378 -14.35540 -14.19195 -14.14716 -14.02074 -13.81371 -13.59916 -13.42361 -13.18590 -13.00443 -12.81126 -12.75174 -12.61844 -12.31870 -12.27189 -12.24079 -12.02964 -11.66710 -11.34515 -11.12309 -10.63474 -10.32599 -10.21197 -9.96121 -9.59593 -8.23177 -6.35717 -0.98395 -0.14316 0.06609 0.50643 1.02782 1.24472 1.39274 1.45315 1.50158 1.54929 2.11654 2.29799 2.43384 2.78060 2.85093 3.07273 3.23226 3.37469 3.49928 3.62515 3.65792 3.87061 4.05565 4.11215 4.17798 4.30320 4.43567 4.50633 4.57431 4.59996 4.72239 4.76292 4.80510 4.85263 4.98428 5.01155 5.04087 5.19184 5.24210 5.48140 5.55629 5.67797 5.70900 5.88293 6.01317 6.40998 6.74672 7.08333 7.16795 7.34862 8.82121 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009365 B = 0.004381 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.055644 B = 6388.976375 C = 8447.443955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.139 3.861 4 N -0.582 5.582 5 C 0.250 3.750 6 C -0.542 4.542 7 H 0.061 0.939 8 C 0.038 3.962 9 N -0.908 5.908 10 Si 0.939 3.061 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.280 1.280 14 C 0.556 3.444 15 O -0.578 6.578 16 C -0.153 4.153 17 C -0.022 4.022 18 C -0.111 4.111 19 C 0.167 3.833 20 N -0.333 5.333 21 N -0.096 5.096 22 N -0.052 5.052 23 N -0.350 5.350 24 C 0.268 3.732 25 C -0.092 4.092 26 C -0.141 4.141 27 C 0.156 3.844 28 F -0.122 7.122 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.268 0.732 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.105 0.895 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -10.236 -0.626 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.017 3.983 4 N -0.310 5.310 5 C 0.130 3.870 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.164 4.164 9 N -0.546 5.546 10 Si 0.765 3.235 11 H -0.190 1.190 12 H -0.208 1.208 13 H -0.206 1.206 14 C 0.344 3.656 15 O -0.461 6.461 16 C -0.157 4.157 17 C -0.041 4.041 18 C -0.131 4.131 19 C 0.074 3.926 20 N -0.124 5.124 21 N -0.081 5.081 22 N -0.047 5.047 23 N -0.202 5.202 24 C -0.007 4.007 25 C -0.151 4.151 26 C -0.162 4.162 27 C 0.135 3.865 28 F -0.100 7.100 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.002 -9.461 -0.364 10.709 hybrid contribution -0.760 0.862 -0.308 1.190 sum 4.242 -8.600 -0.672 9.612 Atomic orbital electron populations 1.24036 0.95000 1.03131 0.97847 1.23165 0.96788 0.97896 1.02361 1.20597 0.91945 0.96398 0.89364 1.48180 1.08375 1.61746 1.12685 1.19218 0.95383 0.94305 0.78133 1.21572 1.42654 0.93235 1.00603 0.92121 1.25438 0.94295 1.01378 0.95312 1.69993 1.41671 1.37344 1.05549 0.85786 0.77984 0.81325 0.78416 1.19029 1.20824 1.20561 1.18195 0.82541 0.77071 0.87797 1.90722 1.76657 1.52703 1.25973 1.20167 1.01409 0.95235 0.98932 1.21768 0.92504 0.99407 0.90373 1.21021 0.96103 0.97445 0.98524 1.17166 0.92454 0.95939 0.87006 1.48805 1.30339 1.10693 1.22609 1.82720 1.05012 1.11140 1.09220 1.78001 1.15895 1.02964 1.07831 1.74420 1.15467 1.06278 1.24024 1.26871 0.93445 0.94428 0.85931 1.21144 1.01003 0.84321 1.08624 1.20816 1.01408 1.00298 0.93678 1.17097 0.96732 0.82363 0.90337 1.91558 1.93696 1.51752 1.73015 0.86390 0.87738 0.88147 0.89451 0.90054 0.95740 0.95011 0.92317 0.81816 0.83733 0.84576 0.85372 0.87637 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 14.32 67.79 0.97 -3.06 16 2 C -0.18 -5.47 9.84 25.65 0.25 -5.22 16 3 C 0.14 4.77 5.93 85.63 0.51 5.27 16 4 N -0.58 -22.73 2.44 -834.26 -2.04 -24.77 16 5 C 0.25 10.74 4.73 85.63 0.40 11.15 16 6 C -0.54 -24.73 6.55 25.60 0.17 -24.56 16 7 H 0.06 2.81 7.76 -2.91 -0.02 2.79 16 8 C 0.04 1.79 5.46 84.65 0.46 2.25 16 9 N -0.91 -45.38 13.29 21.45 0.28 -45.10 16 10 Si 0.94 38.22 29.54 68.60 2.03 40.24 16 11 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 14 C 0.56 22.12 6.84 86.70 0.59 22.71 16 15 O -0.58 -25.30 16.44 -4.02 -0.07 -25.37 16 16 C -0.15 -5.35 4.63 -20.04 -0.09 -5.44 16 17 C -0.02 -0.75 7.78 22.50 0.18 -0.57 16 18 C -0.11 -3.38 9.79 22.34 0.22 -3.16 16 19 C 0.17 4.38 6.35 38.20 0.24 4.62 16 20 N -0.33 -8.86 3.77 -179.06 -0.67 -9.53 16 21 N -0.10 -3.04 13.75 37.02 0.51 -2.53 16 22 N -0.05 -1.66 13.39 37.02 0.50 -1.17 16 23 N -0.35 -9.66 12.15 -50.27 -0.61 -10.28 16 24 C 0.27 5.90 7.97 138.03 1.10 7.00 16 25 C -0.09 -0.95 8.73 71.23 0.62 -0.32 16 26 C -0.14 -3.16 8.37 22.39 0.19 -2.97 16 27 C 0.16 4.53 7.27 22.65 0.16 4.70 16 28 F -0.12 -3.66 16.71 44.97 0.75 -2.91 16 29 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.10 2.47 7.84 -2.91 -0.02 2.45 16 31 H 0.10 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.09 2.91 7.76 -2.39 -0.02 2.89 16 33 H 0.08 2.84 7.23 -2.39 -0.02 2.82 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.03 1.42 6.14 -2.38 -0.01 1.41 16 36 H 0.27 12.88 8.31 -92.71 -0.77 12.11 16 37 H 0.16 6.29 5.19 -2.91 -0.02 6.27 16 38 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.14 0.60 7.83 -2.39 -0.02 0.58 16 40 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 1.01 7.02 -2.39 -0.02 0.99 16 42 H 0.19 2.62 6.24 -2.91 -0.02 2.60 16 Total: -1.00 -61.49 369.06 7.73 -53.75 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.08 Total: 15.25 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.98 Total: 12.40 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -2.03 Total: -93.37 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.07 Total: -25.37 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.75 Total: -2.91 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Total: -61.49 7.73 -53.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451969324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.035 kcal (2) G-P(sol) polarization free energy of solvation -61.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds