Wall clock time and date at job start Wed Apr 1 2020 03:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.05969 * 2 1 4 4 C 1.54262 * 110.07396 * 121.49822 * 2 1 3 5 5 C 1.54542 * 103.09944 * 120.29841 * 4 2 1 6 6 H 1.09006 * 110.60663 * 135.00128 * 5 4 2 7 7 N 1.46494 * 110.61530 * 257.82513 * 5 4 2 8 8 C 1.34771 * 120.00508 * 205.00178 * 7 5 4 9 9 O 1.21730 * 119.99521 * 359.97438 * 8 7 5 10 10 C 1.46248 * 120.00528 * 179.97438 * 8 7 5 11 11 C 1.35025 * 120.00444 * 173.21225 * 10 8 7 12 12 C 1.46960 * 119.99627 * 348.68842 * 11 10 8 13 13 C 1.40028 * 120.10054 * 316.39999 * 12 11 10 14 14 C 1.37602 * 119.89797 * 179.76468 * 13 12 11 15 15 C 1.39175 * 120.09957 * 0.49478 * 14 13 12 16 16 O 1.35565 * 119.89658 * 179.74270 * 15 14 13 17 17 C 1.34790 * 116.99788 * 174.38187 * 16 15 14 18 18 H 1.07993 * 119.99909 * 5.05707 * 17 16 15 19 19 C 1.38719 * 119.99634 * 185.05971 * 17 16 15 20 20 N 1.31508 * 120.00370 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47105 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47308 * 210.00097 * 21 19 17 24 24 H 1.48499 * 109.47033 * 330.00345 * 21 19 17 25 25 C 1.39174 * 120.20434 * 359.75866 * 15 14 13 26 26 C 1.37601 * 120.10140 * 0.02562 * 25 15 14 27 27 C 1.51788 * 103.52524 * 16.49260 * 5 4 2 28 28 O 1.20827 * 126.42711 * 149.37114 * 27 5 4 29 29 O 1.34520 * 107.14039 * 329.37120 * 27 5 4 30 30 H 1.08998 * 109.47603 * 298.50246 * 1 2 3 31 31 H 1.08997 * 109.47491 * 178.49777 * 1 2 3 32 32 H 1.09000 * 109.47173 * 58.50264 * 1 2 3 33 33 H 1.08994 * 109.47255 * 60.69604 * 3 2 1 34 34 H 1.09001 * 109.47141 * 180.69787 * 3 2 1 35 35 H 1.09004 * 109.46832 * 300.70027 * 3 2 1 36 36 H 1.08993 * 110.69281 * 238.70549 * 4 2 1 37 37 H 1.09003 * 110.68974 * 1.73109 * 4 2 1 38 38 H 0.97005 * 119.99695 * 24.99634 * 7 5 4 39 39 H 1.07999 * 120.00072 * 353.21700 * 10 8 7 40 40 H 1.08000 * 120.00065 * 168.68587 * 11 10 8 41 41 H 1.08003 * 120.04932 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.94921 * 180.23610 * 14 13 12 43 43 H 0.96997 * 120.00263 * 180.02562 * 20 19 17 44 44 H 1.07996 * 119.95303 * 179.97438 * 25 15 14 45 45 H 1.08000 * 120.05169 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0595 -0.7570 1.2354 5 6 2.8929 -1.9008 0.6147 6 1 3.8486 -2.0020 1.1291 7 7 2.1498 -3.1626 0.6577 8 6 2.8130 -4.3358 0.6545 9 8 4.0296 -4.3470 0.6155 10 6 2.0712 -5.5954 0.6980 11 6 2.7241 -6.7688 0.5569 12 6 4.1256 -6.7812 0.1148 13 6 4.5370 -5.9553 -0.9384 14 6 5.8513 -5.9667 -1.3458 15 6 6.7689 -6.8050 -0.7195 16 8 8.0616 -6.8167 -1.1276 17 6 8.9240 -7.5613 -0.4074 18 1 8.5602 -8.1778 0.4013 19 6 10.2786 -7.5358 -0.7050 20 7 10.7216 -6.7847 -1.6894 21 14 11.4738 -8.5672 0.2936 22 1 11.6150 -9.9064 -0.3325 23 1 12.7976 -7.8953 0.3291 24 1 10.9589 -8.7199 1.6781 25 6 6.3635 -7.6315 0.3243 26 6 5.0522 -7.6235 0.7413 27 6 3.1031 -1.4492 -0.8192 28 8 4.0556 -1.7012 -1.5185 29 8 2.0298 -0.7158 -1.1651 30 1 -0.3634 0.4904 0.9031 31 1 -0.3634 -1.0273 -0.0269 32 1 -0.3633 0.5369 -0.8762 33 1 1.7069 1.9509 0.8961 34 1 3.1446 1.4260 -0.0125 35 1 1.6865 1.9584 -0.8837 36 1 2.6891 -0.1081 1.8441 37 1 1.2343 -1.1550 1.8260 38 1 1.1803 -3.1536 0.6885 39 1 1.0010 -5.5871 0.8429 40 1 2.2165 -7.6982 0.7690 41 1 3.8246 -5.3079 -1.4281 42 1 6.1704 -5.3273 -2.1555 43 1 11.6688 -6.7671 -1.8977 44 1 7.0788 -8.2806 0.8071 45 1 4.7383 -8.2655 1.5511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492192295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:37 Heat of formation + Delta-G solvation = -83.065265 kcal Electronic energy + Delta-G solvation = -29829.088448 eV Core-core repulsion = 25585.825321 eV Total energy + Delta-G solvation = -4243.263127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60522 -39.62234 -38.64081 -37.93188 -36.52769 -34.93227 -33.89184 -33.07295 -32.12008 -30.45165 -30.07468 -28.02444 -27.87885 -25.47227 -24.92538 -23.34780 -21.96772 -21.76317 -21.17194 -20.44376 -19.43949 -17.91141 -17.39210 -17.29554 -16.84815 -16.59642 -16.44324 -15.40605 -14.93688 -14.65607 -14.57414 -14.31190 -14.20202 -14.09557 -13.87513 -13.67406 -13.41196 -13.30164 -12.99627 -12.92972 -12.83473 -12.55388 -12.43481 -12.21064 -12.16529 -12.09186 -11.66705 -11.39880 -11.33130 -11.00504 -10.89424 -10.76120 -10.66946 -10.58538 -10.38216 -9.57549 -9.42756 -9.14696 -9.09392 -8.67722 -7.89281 -6.84313 -6.42286 -3.97977 1.19228 1.68175 2.46014 2.70500 2.82399 3.15520 3.16999 3.21459 3.25468 3.47178 3.72377 3.90119 3.99827 4.11652 4.17535 4.42176 4.72802 4.86760 4.94462 5.03309 5.05262 5.13872 5.20865 5.21791 5.22637 5.27735 5.39714 5.40024 5.54676 5.59299 5.65493 5.75761 5.88430 6.19983 6.27995 6.31487 6.43574 6.52835 6.63115 6.82680 7.07137 7.15649 7.30944 7.40169 7.44419 7.52010 7.54654 7.95970 8.04299 8.39348 9.02904 9.75615 10.75515 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.002506 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.825519 B =11171.692212 C =12282.257456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.104 3.896 3 C -0.164 4.164 4 C -0.156 4.156 5 C 0.090 3.910 6 H 0.129 0.871 7 N -0.719 5.719 8 C 0.538 3.462 9 O -0.495 6.495 10 C -0.271 4.271 11 C 0.036 3.964 12 C -0.196 4.196 13 C 0.013 3.987 14 C -0.198 4.198 15 C 0.173 3.827 16 O -0.171 6.171 17 C -0.390 4.390 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.251 4.251 26 C -0.040 4.040 27 C 0.470 3.530 28 O -0.417 6.417 29 O -0.348 6.348 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.115 0.885 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.281 11.980 8.613 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.067 3.933 3 C -0.221 4.221 4 C -0.194 4.194 5 C -0.018 4.018 6 H 0.147 0.853 7 N -0.376 5.376 8 C 0.329 3.671 9 O -0.369 6.369 10 C -0.292 4.292 11 C 0.017 3.983 12 C -0.197 4.197 13 C -0.006 4.006 14 C -0.218 4.218 15 C 0.117 3.883 16 O -0.073 6.073 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.271 4.271 26 C -0.058 4.058 27 C 0.306 3.694 28 O -0.293 6.293 29 O -0.266 6.266 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.236 0.764 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.599 12.038 7.716 26.743 hybrid contribution 0.033 -0.401 0.653 0.767 sum -22.565 11.637 8.369 26.733 Atomic orbital electron populations 1.21969 0.91233 1.03556 1.03541 1.22871 0.95856 0.92074 0.82527 1.22264 1.02246 0.93895 1.03707 1.23358 1.01568 0.96875 0.97594 1.22161 0.99591 0.85527 0.94504 0.85349 1.45788 1.09682 1.03970 1.78130 1.18676 0.88143 0.83932 0.76391 1.91051 1.13031 1.86438 1.46340 1.22463 0.99377 0.91925 1.15469 1.22367 0.93272 0.96391 0.86292 1.18293 0.92775 1.05422 1.03188 1.20442 0.94237 0.92345 0.93546 1.20036 0.92508 1.03872 1.05361 1.19535 0.85683 0.91868 0.91164 1.83916 1.13190 1.61136 1.49099 1.21402 0.87100 1.23339 1.14751 0.88870 1.25338 0.96663 0.97533 0.97084 1.70029 1.15445 1.36547 1.27271 0.85694 0.79150 0.79048 0.79431 1.19837 1.20230 1.19141 1.20943 0.96668 1.06261 1.03190 1.20725 0.92700 0.95524 0.96892 1.23785 0.80003 0.76226 0.89428 1.90799 1.25896 1.53332 1.59318 1.87168 1.42668 1.59232 1.37570 0.90054 0.91324 0.91021 0.90046 0.91592 0.90888 0.87712 0.87770 0.76411 0.85942 0.85876 0.88227 0.86736 0.91939 0.85630 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 8.72 37.16 0.32 -0.27 16 2 C 0.10 0.68 1.28 -89.96 -0.11 0.56 16 3 C -0.16 -0.89 8.72 37.15 0.32 -0.57 16 4 C -0.16 -0.90 6.06 -25.26 -0.15 -1.05 16 5 C 0.09 0.97 3.39 -67.74 -0.23 0.74 16 6 H 0.13 1.64 7.55 -51.93 -0.39 1.25 16 7 N -0.72 -7.54 5.10 -55.06 -0.28 -7.83 16 8 C 0.54 7.88 6.77 -13.05 -0.09 7.79 16 9 O -0.49 -9.81 11.82 5.16 0.06 -9.75 16 10 C -0.27 -3.33 9.90 -37.51 -0.37 -3.70 16 11 C 0.04 0.51 9.80 -37.19 -0.36 0.14 16 12 C -0.20 -3.71 4.54 -105.03 -0.48 -4.18 16 13 C 0.01 0.27 6.59 -39.14 -0.26 0.02 16 14 C -0.20 -4.85 9.97 -39.47 -0.39 -5.24 16 15 C 0.17 4.55 6.66 -38.89 -0.26 4.29 16 16 O -0.17 -5.19 9.74 0.73 0.01 -5.18 16 17 C -0.39 -11.35 9.48 30.91 0.29 -11.06 16 18 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -26.05 13.67 55.48 0.76 -25.30 16 21 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.25 -5.87 9.14 -39.47 -0.36 -6.23 16 26 C -0.04 -0.79 9.78 -39.15 -0.38 -1.17 16 27 C 0.47 6.68 8.23 36.54 0.30 6.98 16 28 O -0.42 -8.06 18.00 -18.29 -0.33 -8.38 16 29 O -0.35 -3.99 10.44 -39.58 -0.41 -4.40 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.46 7.72 -51.93 -0.40 0.06 16 37 H 0.10 0.36 7.51 -51.93 -0.39 -0.03 16 38 H 0.40 2.72 8.53 -40.82 -0.35 2.37 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.10 2.01 7.02 -52.48 -0.37 1.65 16 42 H 0.11 2.82 8.06 -52.49 -0.42 2.39 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.13 2.88 5.62 -52.49 -0.29 2.59 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -38.16 382.70 -7.59 -45.75 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.83 Total: 5.18 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.31 Total: -11.95 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.48 Total: -33.12 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.67 Total: -27.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.16 -7.59 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492192295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.316 kcal (2) G-P(sol) polarization free energy of solvation -38.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds