Wall clock time and date at job start Wed Apr 1 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.05969 * 2 1 4 4 C 1.54262 * 110.07396 * 121.49822 * 2 1 3 5 5 C 1.54542 * 103.09944 * 120.29841 * 4 2 1 6 6 H 1.09006 * 110.60663 * 135.00128 * 5 4 2 7 7 N 1.46494 * 110.61530 * 257.82513 * 5 4 2 8 8 C 1.34771 * 120.00508 * 205.00178 * 7 5 4 9 9 O 1.21730 * 119.99521 * 359.97438 * 8 7 5 10 10 C 1.46248 * 120.00528 * 179.97438 * 8 7 5 11 11 C 1.35025 * 120.00444 * 173.21225 * 10 8 7 12 12 C 1.46960 * 119.99627 * 348.68842 * 11 10 8 13 13 C 1.40028 * 120.10054 * 316.39999 * 12 11 10 14 14 C 1.37602 * 119.89797 * 179.76468 * 13 12 11 15 15 C 1.39175 * 120.09957 * 0.49478 * 14 13 12 16 16 O 1.35565 * 119.89658 * 179.74270 * 15 14 13 17 17 C 1.34790 * 116.99788 * 174.38187 * 16 15 14 18 18 H 1.07993 * 119.99909 * 5.05707 * 17 16 15 19 19 C 1.38719 * 119.99634 * 185.05971 * 17 16 15 20 20 N 1.31508 * 120.00370 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47105 * 89.99836 * 21 19 17 23 23 H 1.48496 * 109.47308 * 210.00097 * 21 19 17 24 24 H 1.48499 * 109.47033 * 330.00345 * 21 19 17 25 25 C 1.39174 * 120.20434 * 359.75866 * 15 14 13 26 26 C 1.37601 * 120.10140 * 0.02562 * 25 15 14 27 27 C 1.51788 * 103.52524 * 16.49260 * 5 4 2 28 28 O 1.20827 * 126.42711 * 149.37114 * 27 5 4 29 29 O 1.34520 * 107.14039 * 329.37120 * 27 5 4 30 30 H 1.08998 * 109.47603 * 298.50246 * 1 2 3 31 31 H 1.08997 * 109.47491 * 178.49777 * 1 2 3 32 32 H 1.09000 * 109.47173 * 58.50264 * 1 2 3 33 33 H 1.08994 * 109.47255 * 60.69604 * 3 2 1 34 34 H 1.09001 * 109.47141 * 180.69787 * 3 2 1 35 35 H 1.09004 * 109.46832 * 300.70027 * 3 2 1 36 36 H 1.08993 * 110.69281 * 238.70549 * 4 2 1 37 37 H 1.09003 * 110.68974 * 1.73109 * 4 2 1 38 38 H 0.97005 * 119.99695 * 24.99634 * 7 5 4 39 39 H 1.07999 * 120.00072 * 353.21700 * 10 8 7 40 40 H 1.08000 * 120.00065 * 168.68587 * 11 10 8 41 41 H 1.08003 * 120.04932 * 359.97438 * 13 12 11 42 42 H 1.07996 * 119.94921 * 180.23610 * 14 13 12 43 43 H 0.96997 * 120.00263 * 180.02562 * 20 19 17 44 44 H 1.07996 * 119.95303 * 179.97438 * 25 15 14 45 45 H 1.08000 * 120.05169 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0595 -0.7570 1.2354 5 6 2.8929 -1.9008 0.6147 6 1 3.8486 -2.0020 1.1291 7 7 2.1498 -3.1626 0.6577 8 6 2.8130 -4.3358 0.6545 9 8 4.0296 -4.3470 0.6155 10 6 2.0712 -5.5954 0.6980 11 6 2.7241 -6.7688 0.5569 12 6 4.1256 -6.7812 0.1148 13 6 4.5370 -5.9553 -0.9384 14 6 5.8513 -5.9667 -1.3458 15 6 6.7689 -6.8050 -0.7195 16 8 8.0616 -6.8167 -1.1276 17 6 8.9240 -7.5613 -0.4074 18 1 8.5602 -8.1778 0.4013 19 6 10.2786 -7.5358 -0.7050 20 7 10.7216 -6.7847 -1.6894 21 14 11.4738 -8.5672 0.2936 22 1 11.6150 -9.9064 -0.3325 23 1 12.7976 -7.8953 0.3291 24 1 10.9589 -8.7199 1.6781 25 6 6.3635 -7.6315 0.3243 26 6 5.0522 -7.6235 0.7413 27 6 3.1031 -1.4492 -0.8192 28 8 4.0556 -1.7012 -1.5185 29 8 2.0298 -0.7158 -1.1651 30 1 -0.3634 0.4904 0.9031 31 1 -0.3634 -1.0273 -0.0269 32 1 -0.3633 0.5369 -0.8762 33 1 1.7069 1.9509 0.8961 34 1 3.1446 1.4260 -0.0125 35 1 1.6865 1.9584 -0.8837 36 1 2.6891 -0.1081 1.8441 37 1 1.2343 -1.1550 1.8260 38 1 1.1803 -3.1536 0.6885 39 1 1.0010 -5.5871 0.8429 40 1 2.2165 -7.6982 0.7690 41 1 3.8246 -5.3079 -1.4281 42 1 6.1704 -5.3273 -2.1555 43 1 11.6688 -6.7671 -1.8977 44 1 7.0788 -8.2806 0.8071 45 1 4.7383 -8.2655 1.5511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492192295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:36 Heat of formation + Delta-G solvation = -111.047541 kcal Electronic energy + Delta-G solvation = -29830.301851 eV Core-core repulsion = 25585.825321 eV Total energy + Delta-G solvation = -4244.476530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.51867 -41.04906 -40.32055 -39.08181 -38.24570 -36.02133 -34.63237 -34.59918 -33.95986 -31.85708 -31.38231 -29.45459 -28.35655 -27.45417 -25.78298 -24.63235 -23.57660 -22.94157 -22.52644 -21.27365 -20.72846 -19.81535 -18.95535 -18.41303 -18.07544 -17.88609 -17.40564 -16.49720 -16.41055 -16.27981 -15.93177 -15.66479 -15.51288 -15.29523 -14.98598 -14.90015 -14.62040 -14.53172 -14.47425 -14.26077 -13.79964 -13.59102 -13.51176 -13.40565 -13.09839 -13.05345 -12.70932 -12.68696 -12.61331 -12.38060 -12.25798 -12.13625 -12.08018 -11.76973 -11.55079 -11.26746 -11.00925 -10.76014 -10.42791 -10.16070 -9.64513 -8.59499 -8.49944 -6.18073 -0.06537 0.59257 0.68611 1.08263 1.31948 1.44521 1.51622 1.93988 2.16018 2.27148 2.42791 2.84628 2.90419 3.15739 3.17488 3.49252 3.54186 3.71010 3.89932 3.97993 4.03044 4.10472 4.12342 4.22870 4.50176 4.56168 4.59093 4.69470 4.73878 4.75659 4.82007 4.87094 4.91866 5.02349 5.06528 5.18868 5.21963 5.22237 5.26372 5.33256 5.42081 5.64581 5.69205 5.71798 5.80826 6.00218 6.21555 6.23242 6.54847 6.93188 7.30710 7.75846 8.73719 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.002506 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.825519 B =11171.692212 C =12282.257456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 C -0.166 4.166 4 C -0.138 4.138 5 C 0.090 3.910 6 H 0.103 0.897 7 N -0.695 5.695 8 C 0.522 3.478 9 O -0.557 6.557 10 C -0.230 4.230 11 C 0.011 3.989 12 C -0.162 4.162 13 C 0.013 3.987 14 C -0.224 4.224 15 C 0.128 3.872 16 O -0.233 6.233 17 C -0.416 4.416 18 H 0.106 0.894 19 C -0.027 4.027 20 N -0.924 5.924 21 Si 1.026 2.974 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.251 1.251 25 C -0.256 4.256 26 C -0.042 4.042 27 C 0.468 3.532 28 O -0.490 6.490 29 O -0.361 6.361 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.425 0.575 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.274 0.726 44 H 0.124 0.876 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.117 11.560 12.770 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.058 3.942 3 C -0.223 4.223 4 C -0.175 4.175 5 C -0.019 4.019 6 H 0.121 0.879 7 N -0.352 5.352 8 C 0.314 3.686 9 O -0.435 6.435 10 C -0.250 4.250 11 C -0.008 4.008 12 C -0.163 4.163 13 C -0.005 4.005 14 C -0.243 4.243 15 C 0.077 3.923 16 O -0.139 6.139 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.224 4.224 20 N -0.562 5.562 21 Si 0.844 3.156 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.174 1.174 25 C -0.275 4.275 26 C -0.060 4.060 27 C 0.307 3.693 28 O -0.372 6.372 29 O -0.280 6.280 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.134 0.866 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.265 0.735 39 H 0.202 0.798 40 H 0.194 0.806 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -28.608 11.662 11.910 33.110 hybrid contribution 1.217 0.036 -0.570 1.345 sum -27.391 11.698 11.339 31.870 Atomic orbital electron populations 1.22051 0.88465 1.04489 1.04993 1.23415 0.97797 0.91933 0.81096 1.22346 1.01060 0.93648 1.05287 1.23470 1.02079 0.94644 0.97310 1.22174 1.00025 0.87356 0.92313 0.87912 1.45577 1.10818 1.02887 1.75942 1.19434 0.87726 0.85942 0.75522 1.91068 1.15954 1.87455 1.49035 1.23030 1.01790 0.89566 1.10593 1.22651 0.90207 0.99481 0.88489 1.18895 0.95795 1.01528 1.00039 1.20569 0.92686 0.92835 0.94427 1.20126 0.94351 1.04299 1.05565 1.19968 0.85015 0.93932 0.93351 1.83888 1.14926 1.63734 1.51391 1.21944 0.87862 1.23914 1.15485 0.87706 1.26773 0.98383 0.98940 0.98323 1.70198 1.15987 1.39769 1.30208 0.84506 0.75903 0.77179 0.78036 1.18323 1.19547 1.17411 1.21113 0.98613 1.05551 1.02256 1.21224 0.90956 0.96169 0.97677 1.24426 0.79373 0.75366 0.90154 1.90762 1.28952 1.55977 1.61517 1.87154 1.41210 1.58971 1.40648 0.86720 0.90531 0.91608 0.86573 0.93561 0.91288 0.85905 0.83879 0.73537 0.79808 0.80583 0.87596 0.89355 0.91749 0.85823 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 8.72 71.98 0.63 0.14 16 2 C 0.09 0.95 1.28 -10.37 -0.01 0.93 16 3 C -0.17 -1.45 8.72 71.98 0.63 -0.83 16 4 C -0.14 -1.05 6.06 31.55 0.19 -0.86 16 5 C 0.09 1.83 3.39 45.12 0.15 1.98 16 6 H 0.10 2.70 7.55 -2.38 -0.02 2.69 16 7 N -0.69 -12.14 5.10 -446.32 -2.28 -14.42 16 8 C 0.52 13.72 6.77 86.33 0.58 14.31 16 9 O -0.56 -22.07 11.82 -4.44 -0.05 -22.12 16 10 C -0.23 -4.18 9.90 23.61 0.23 -3.95 16 11 C 0.01 0.24 9.80 23.82 0.23 0.47 16 12 C -0.16 -5.78 4.54 -20.13 -0.09 -5.87 16 13 C 0.01 0.58 6.59 22.55 0.15 0.73 16 14 C -0.22 -12.00 9.97 22.34 0.22 -11.78 16 15 C 0.13 7.36 6.66 22.72 0.15 7.51 16 16 O -0.23 -15.62 9.74 -20.30 -0.20 -15.82 16 17 C -0.42 -26.14 9.48 67.93 0.64 -25.50 16 18 H 0.11 5.99 5.18 -2.91 -0.02 5.97 16 19 C -0.03 -1.65 5.49 84.86 0.47 -1.18 16 20 N -0.92 -60.63 13.67 21.62 0.30 -60.34 16 21 Si 1.03 45.25 29.55 68.60 2.03 47.28 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 25 C -0.26 -12.38 9.14 22.34 0.20 -12.18 16 26 C -0.04 -1.60 9.78 22.55 0.22 -1.38 16 27 C 0.47 13.77 8.23 71.58 0.59 14.36 16 28 O -0.49 -20.79 18.00 21.52 0.39 -20.40 16 29 O -0.36 -8.08 10.44 -54.69 -0.57 -8.65 16 30 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.12 0.59 7.72 -2.39 -0.02 0.57 16 37 H 0.14 0.04 7.51 -2.39 -0.02 0.02 16 38 H 0.42 3.28 8.53 -92.70 -0.79 2.49 16 39 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 4.39 7.02 -2.91 -0.02 4.37 16 42 H 0.09 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 44 H 0.12 5.89 5.62 -2.91 -0.02 5.88 16 45 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -100.98 382.70 5.05 -95.93 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.24 Total: 21.62 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 5.19 Total: -23.08 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.98 Total: -74.75 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -0.43 Total: -67.00 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -100.98 5.05 -95.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492192295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.117 kcal (2) G-P(sol) polarization free energy of solvation -100.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds