Wall clock time and date at job start Wed Apr 1 2020 03:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.36982 * 2 1 4 4 C 1.54375 * 110.32176 * 122.17631 * 2 1 3 5 5 C 1.54464 * 103.04616 * 136.71495 * 4 2 1 6 6 H 1.08999 * 110.40495 * 241.47327 * 5 4 2 7 7 N 1.46499 * 110.40485 * 119.16208 * 5 4 2 8 8 C 1.34778 * 120.00211 * 156.63126 * 7 5 4 9 9 O 1.21719 * 119.99580 * 0.02562 * 8 7 5 10 10 C 1.46251 * 120.00051 * 180.02562 * 8 7 5 11 11 C 1.35020 * 119.99746 * 173.22611 * 10 8 7 12 12 C 1.46960 * 120.00114 * 348.50565 * 11 10 8 13 13 C 1.40029 * 120.10159 * 316.62430 * 12 11 10 14 14 C 1.37592 * 119.89722 * 179.74248 * 13 12 11 15 15 C 1.39181 * 120.10295 * 0.54238 * 14 13 12 16 16 O 1.35568 * 119.89924 * 179.76361 * 15 14 13 17 17 C 1.34781 * 116.99906 * 174.34079 * 16 15 14 18 18 H 1.08001 * 120.00086 * 5.05765 * 17 16 15 19 19 C 1.38717 * 119.99814 * 185.05740 * 17 16 15 20 20 N 1.31513 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47005 * 59.99555 * 21 19 17 23 23 H 1.48494 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46773 * 299.99876 * 21 19 17 25 25 C 1.39169 * 120.20162 * 359.72976 * 15 14 13 26 26 C 1.37607 * 120.10372 * 359.97438 * 25 15 14 27 27 C 1.51511 * 104.73341 * 0.31769 * 5 4 2 28 28 O 1.20826 * 125.94693 * 159.63846 * 27 5 4 29 29 O 1.34760 * 108.00276 * 339.76532 * 27 5 4 30 30 H 1.09005 * 109.47295 * 297.82585 * 1 2 3 31 31 H 1.09008 * 109.46673 * 57.81965 * 1 2 3 32 32 H 1.09000 * 109.47880 * 177.82294 * 1 2 3 33 33 H 1.08996 * 109.47224 * 182.17395 * 3 2 1 34 34 H 1.08998 * 109.47096 * 302.17412 * 3 2 1 35 35 H 1.08999 * 109.46720 * 62.17824 * 3 2 1 36 36 H 1.09003 * 110.69416 * 18.32703 * 4 2 1 37 37 H 1.08990 * 110.85050 * 255.17714 * 4 2 1 38 38 H 0.96996 * 120.00044 * 336.63210 * 7 5 4 39 39 H 1.08001 * 120.00327 * 352.94669 * 10 8 7 40 40 H 1.07999 * 120.00128 * 168.50616 * 11 10 8 41 41 H 1.08001 * 120.04490 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.95225 * 180.27126 * 14 13 12 43 43 H 0.97002 * 119.99917 * 180.02562 * 20 19 17 44 44 H 1.07995 * 119.95253 * 180.02562 * 25 15 14 45 45 H 1.08004 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7709 1.2253 5 6 3.2144 -1.6157 0.6307 6 1 3.0097 -2.6787 0.7584 7 7 4.4883 -1.2624 1.2620 8 6 5.5070 -2.1449 1.2640 9 8 5.3687 -3.2352 0.7409 10 6 6.7786 -1.7924 1.8948 11 6 7.7510 -2.7208 2.0185 12 6 7.4535 -4.1360 1.7566 13 6 6.2735 -4.7081 2.2478 14 6 5.9966 -6.0320 1.9955 15 6 6.8926 -6.8054 1.2631 16 8 6.6178 -8.1107 1.0212 17 6 7.4648 -8.7739 0.2091 18 1 8.3599 -8.2881 -0.1504 19 6 7.1868 -10.0804 -0.1649 20 7 6.0972 -10.6722 0.2733 21 14 8.3611 -11.0000 -1.2898 22 1 9.6966 -11.0873 -0.6463 23 1 7.8405 -12.3686 -1.5365 24 1 8.4799 -10.2749 -2.5803 25 6 8.0692 -6.2426 0.7778 26 6 8.3517 -4.9177 1.0199 27 6 3.2361 -1.2550 -0.8407 28 8 4.1669 -1.4100 -1.5953 29 8 2.0368 -0.7289 -1.1583 30 1 -0.3634 0.4797 0.9089 31 1 -0.3633 0.5474 -0.8699 32 1 -0.3635 -1.0269 -0.0390 33 1 3.1516 1.4175 -0.0390 34 1 1.6760 1.9654 -0.8698 35 1 1.7393 1.9418 0.9089 36 1 1.2921 -1.4137 1.6449 37 1 2.4451 -0.0830 1.9810 38 1 4.5986 -0.3934 1.6786 39 1 6.9414 -0.7882 2.2576 40 1 8.7476 -2.4235 2.3099 41 1 5.5798 -4.1098 2.8197 42 1 5.0847 -6.4731 2.3702 43 1 5.9030 -11.5860 0.0120 44 1 8.7614 -6.8462 0.2097 45 1 9.2649 -4.4817 0.6426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492192296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:40 Heat of formation + Delta-G solvation = -83.460098 kcal Electronic energy + Delta-G solvation = -29707.626906 eV Core-core repulsion = 25464.346658 eV Total energy + Delta-G solvation = -4243.280249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59382 -39.62157 -38.66192 -37.90032 -36.54940 -35.02205 -33.73644 -33.06238 -32.12790 -30.41450 -30.10809 -28.03522 -27.90929 -25.48930 -24.98148 -23.36946 -21.89237 -21.77250 -21.20290 -20.43915 -19.44285 -17.93016 -17.36756 -17.16148 -16.89498 -16.60122 -16.30815 -15.72506 -14.87065 -14.73946 -14.58507 -14.33574 -14.25303 -13.98150 -13.81517 -13.66768 -13.44370 -13.31017 -13.08054 -12.94255 -12.74013 -12.56627 -12.54230 -12.28058 -12.17249 -11.97203 -11.67604 -11.41518 -11.35489 -10.97543 -10.92042 -10.78014 -10.68159 -10.63008 -10.40107 -9.55065 -9.42317 -9.16081 -9.06999 -8.68026 -7.91728 -6.85493 -6.43991 -3.99573 1.22393 1.69709 2.43780 2.70211 2.94832 3.14337 3.15450 3.18347 3.19833 3.47164 3.73287 3.91394 3.99319 4.08584 4.17567 4.40629 4.70840 4.79250 4.98030 4.99510 5.08097 5.12440 5.16635 5.21960 5.23427 5.31832 5.36770 5.39341 5.53695 5.60188 5.63935 5.75400 5.85021 6.17112 6.25777 6.31335 6.43951 6.50080 6.59395 6.79438 7.04631 7.13809 7.32166 7.36306 7.44521 7.51695 7.52126 7.93532 8.02691 8.44865 9.01657 9.73149 10.73771 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002462 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.469496 B =11369.682528 C =12351.086151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.104 3.896 3 C -0.167 4.167 4 C -0.152 4.152 5 C 0.091 3.909 6 H 0.134 0.866 7 N -0.722 5.722 8 C 0.543 3.457 9 O -0.497 6.497 10 C -0.268 4.268 11 C 0.033 3.967 12 C -0.192 4.192 13 C 0.011 3.989 14 C -0.203 4.203 15 C 0.172 3.828 16 O -0.172 6.172 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.250 4.250 26 C -0.039 4.039 27 C 0.469 3.531 28 O -0.422 6.422 29 O -0.348 6.348 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.399 0.601 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 25.451 5.767 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.067 3.933 3 C -0.224 4.224 4 C -0.190 4.190 5 C -0.017 4.017 6 H 0.152 0.848 7 N -0.379 5.379 8 C 0.333 3.667 9 O -0.371 6.371 10 C -0.289 4.289 11 C 0.014 3.986 12 C -0.193 4.193 13 C -0.008 4.008 14 C -0.222 4.222 15 C 0.117 3.883 16 O -0.074 6.074 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.269 4.269 26 C -0.058 4.058 27 C 0.305 3.695 28 O -0.300 6.300 29 O -0.266 6.266 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.234 0.766 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.111 24.130 4.839 25.912 hybrid contribution 0.642 0.105 -0.451 0.792 sum -7.468 24.235 4.388 25.736 Atomic orbital electron populations 1.21895 0.90707 1.03990 1.03480 1.22981 0.96215 0.91652 0.82417 1.22304 1.01916 0.94285 1.03904 1.23252 0.98147 0.99782 0.97771 1.22122 0.85475 1.03769 0.90370 0.84812 1.45820 1.11910 1.19761 1.60371 1.18564 0.83920 0.84043 0.80143 1.91023 1.81305 1.21105 1.43653 1.22470 0.95310 1.00363 1.10771 1.22348 0.96749 0.92175 0.87368 1.18293 0.98585 0.92456 1.09964 1.20425 0.92735 0.92773 0.94860 1.19993 1.00658 0.93922 1.07626 1.19527 0.92246 0.84800 0.91766 1.83901 1.49032 1.16589 1.57883 1.21356 1.03610 0.95792 1.25846 0.88917 1.25325 0.97342 0.96035 0.97823 1.70015 1.23981 1.13373 1.42092 0.85768 0.79347 0.78471 0.79798 1.19436 1.20246 1.19410 1.20956 1.00055 0.96073 1.09846 1.20753 0.96716 0.92921 0.95389 1.23799 0.80526 0.74581 0.90565 1.90748 1.32440 1.48504 1.58281 1.87412 1.33489 1.65399 1.40301 0.89950 0.91038 0.90880 0.91894 0.90793 0.89940 0.87647 0.88057 0.76582 0.86051 0.85929 0.88113 0.86845 0.91901 0.85627 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.82 37.15 0.33 -0.33 16 2 C 0.10 0.69 1.25 -89.90 -0.11 0.58 16 3 C -0.17 -0.84 8.70 37.16 0.32 -0.51 16 4 C -0.15 -0.86 6.08 -25.24 -0.15 -1.01 16 5 C 0.09 0.97 3.35 -67.92 -0.23 0.74 16 6 H 0.13 1.67 7.60 -51.93 -0.39 1.28 16 7 N -0.72 -7.61 5.11 -55.24 -0.28 -7.90 16 8 C 0.54 8.06 6.76 -13.04 -0.09 7.97 16 9 O -0.50 -9.92 11.86 5.17 0.06 -9.86 16 10 C -0.27 -3.37 9.90 -37.51 -0.37 -3.74 16 11 C 0.03 0.47 9.80 -37.19 -0.36 0.10 16 12 C -0.19 -3.60 4.54 -105.02 -0.48 -4.08 16 13 C 0.01 0.21 6.60 -39.15 -0.26 -0.05 16 14 C -0.20 -4.68 9.97 -39.47 -0.39 -5.08 16 15 C 0.17 4.43 6.66 -38.89 -0.26 4.18 16 16 O -0.17 -5.12 9.74 0.75 0.01 -5.11 16 17 C -0.39 -11.29 9.48 30.91 0.29 -11.00 16 18 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 19 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 20 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 21 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.25 -5.84 9.14 -39.47 -0.36 -6.20 16 26 C -0.04 -0.79 9.78 -39.14 -0.38 -1.17 16 27 C 0.47 6.59 7.85 36.40 0.29 6.88 16 28 O -0.42 -7.93 17.98 -18.30 -0.33 -8.25 16 29 O -0.35 -4.07 10.60 -40.27 -0.43 -4.50 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.38 7.94 -51.93 -0.41 -0.04 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.11 0.46 7.82 -51.93 -0.41 0.05 16 37 H 0.10 0.33 7.36 -51.93 -0.38 -0.05 16 38 H 0.40 2.67 8.32 -40.82 -0.34 2.33 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.10 1.79 7.01 -52.49 -0.37 1.42 16 42 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 2.90 5.62 -52.49 -0.29 2.61 16 45 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -38.16 382.13 -7.60 -45.76 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.81 Total: 4.75 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.32 Total: -11.69 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.48 Total: -32.94 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.69 Total: -27.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.16 -7.60 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492192296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.696 kcal (2) G-P(sol) polarization free energy of solvation -38.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds