Wall clock time and date at job start Wed Apr 1 2020 03:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 110.36982 * 2 1 4 4 C 1.54375 * 110.32176 * 122.17631 * 2 1 3 5 5 C 1.54464 * 103.04616 * 136.71495 * 4 2 1 6 6 H 1.08999 * 110.40495 * 241.47327 * 5 4 2 7 7 N 1.46499 * 110.40485 * 119.16208 * 5 4 2 8 8 C 1.34778 * 120.00211 * 156.63126 * 7 5 4 9 9 O 1.21719 * 119.99580 * 0.02562 * 8 7 5 10 10 C 1.46251 * 120.00051 * 180.02562 * 8 7 5 11 11 C 1.35020 * 119.99746 * 173.22611 * 10 8 7 12 12 C 1.46960 * 120.00114 * 348.50565 * 11 10 8 13 13 C 1.40029 * 120.10159 * 316.62430 * 12 11 10 14 14 C 1.37592 * 119.89722 * 179.74248 * 13 12 11 15 15 C 1.39181 * 120.10295 * 0.54238 * 14 13 12 16 16 O 1.35568 * 119.89924 * 179.76361 * 15 14 13 17 17 C 1.34781 * 116.99906 * 174.34079 * 16 15 14 18 18 H 1.08001 * 120.00086 * 5.05765 * 17 16 15 19 19 C 1.38717 * 119.99814 * 185.05740 * 17 16 15 20 20 N 1.31513 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00075 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47005 * 59.99555 * 21 19 17 23 23 H 1.48494 * 109.47314 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46773 * 299.99876 * 21 19 17 25 25 C 1.39169 * 120.20162 * 359.72976 * 15 14 13 26 26 C 1.37607 * 120.10372 * 359.97438 * 25 15 14 27 27 C 1.51511 * 104.73341 * 0.31769 * 5 4 2 28 28 O 1.20826 * 125.94693 * 159.63846 * 27 5 4 29 29 O 1.34760 * 108.00276 * 339.76532 * 27 5 4 30 30 H 1.09005 * 109.47295 * 297.82585 * 1 2 3 31 31 H 1.09008 * 109.46673 * 57.81965 * 1 2 3 32 32 H 1.09000 * 109.47880 * 177.82294 * 1 2 3 33 33 H 1.08996 * 109.47224 * 182.17395 * 3 2 1 34 34 H 1.08998 * 109.47096 * 302.17412 * 3 2 1 35 35 H 1.08999 * 109.46720 * 62.17824 * 3 2 1 36 36 H 1.09003 * 110.69416 * 18.32703 * 4 2 1 37 37 H 1.08990 * 110.85050 * 255.17714 * 4 2 1 38 38 H 0.96996 * 120.00044 * 336.63210 * 7 5 4 39 39 H 1.08001 * 120.00327 * 352.94669 * 10 8 7 40 40 H 1.07999 * 120.00128 * 168.50616 * 11 10 8 41 41 H 1.08001 * 120.04490 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.95225 * 180.27126 * 14 13 12 43 43 H 0.97002 * 119.99917 * 180.02562 * 20 19 17 44 44 H 1.07995 * 119.95253 * 180.02562 * 25 15 14 45 45 H 1.08004 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7709 1.2253 5 6 3.2144 -1.6157 0.6307 6 1 3.0097 -2.6787 0.7584 7 7 4.4883 -1.2624 1.2620 8 6 5.5070 -2.1449 1.2640 9 8 5.3687 -3.2352 0.7409 10 6 6.7786 -1.7924 1.8948 11 6 7.7510 -2.7208 2.0185 12 6 7.4535 -4.1360 1.7566 13 6 6.2735 -4.7081 2.2478 14 6 5.9966 -6.0320 1.9955 15 6 6.8926 -6.8054 1.2631 16 8 6.6178 -8.1107 1.0212 17 6 7.4648 -8.7739 0.2091 18 1 8.3599 -8.2881 -0.1504 19 6 7.1868 -10.0804 -0.1649 20 7 6.0972 -10.6722 0.2733 21 14 8.3611 -11.0000 -1.2898 22 1 9.6966 -11.0873 -0.6463 23 1 7.8405 -12.3686 -1.5365 24 1 8.4799 -10.2749 -2.5803 25 6 8.0692 -6.2426 0.7778 26 6 8.3517 -4.9177 1.0199 27 6 3.2361 -1.2550 -0.8407 28 8 4.1669 -1.4100 -1.5953 29 8 2.0368 -0.7289 -1.1583 30 1 -0.3634 0.4797 0.9089 31 1 -0.3633 0.5474 -0.8699 32 1 -0.3635 -1.0269 -0.0390 33 1 3.1516 1.4175 -0.0390 34 1 1.6760 1.9654 -0.8698 35 1 1.7393 1.9418 0.9089 36 1 1.2921 -1.4137 1.6449 37 1 2.4451 -0.0830 1.9810 38 1 4.5986 -0.3934 1.6786 39 1 6.9414 -0.7882 2.2576 40 1 8.7476 -2.4235 2.3099 41 1 5.5798 -4.1098 2.8197 42 1 5.0847 -6.4731 2.3702 43 1 5.9030 -11.5860 0.0120 44 1 8.7614 -6.8462 0.2097 45 1 9.2649 -4.4817 0.6426 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492192296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:39 Heat of formation + Delta-G solvation = -110.997384 kcal Electronic energy + Delta-G solvation = -29708.821012 eV Core-core repulsion = 25464.346658 eV Total energy + Delta-G solvation = -4244.474355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.48222 -41.02179 -40.29628 -38.99635 -38.21999 -36.09748 -34.61631 -34.44233 -33.94148 -31.83264 -31.33277 -29.41577 -28.39295 -27.44332 -25.81527 -24.63853 -23.55354 -22.86811 -22.45413 -21.29684 -20.71369 -19.79491 -18.93323 -18.29441 -18.10493 -17.76672 -17.19919 -16.72553 -16.38961 -16.26545 -16.03023 -15.65738 -15.44122 -15.37854 -15.00127 -14.70367 -14.63537 -14.53534 -14.39574 -14.17527 -13.83284 -13.68601 -13.56731 -13.17435 -13.13598 -13.04490 -12.74616 -12.66516 -12.51719 -12.38230 -12.25580 -12.14434 -12.09909 -11.82793 -11.52725 -11.25901 -10.99011 -10.73656 -10.40601 -10.12791 -9.59231 -8.57202 -8.50010 -6.17293 -0.03211 0.67070 0.70821 1.10625 1.31442 1.45034 1.48622 2.02824 2.15783 2.28219 2.40692 2.85303 2.92641 3.18123 3.19322 3.51821 3.55961 3.69186 3.90225 3.99395 4.05072 4.12193 4.16055 4.20170 4.53580 4.58702 4.65127 4.66308 4.74271 4.75829 4.79658 4.86119 4.92526 5.04164 5.07882 5.17902 5.23619 5.24407 5.29086 5.29914 5.44211 5.66414 5.69872 5.71457 5.82622 6.00905 6.24072 6.26172 6.58107 6.93748 7.36154 7.75623 8.72926 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002462 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.469496 B =11369.682528 C =12351.086151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.093 3.907 3 C -0.166 4.166 4 C -0.134 4.134 5 C 0.090 3.910 6 H 0.111 0.889 7 N -0.699 5.699 8 C 0.528 3.472 9 O -0.558 6.558 10 C -0.230 4.230 11 C 0.008 3.992 12 C -0.163 4.163 13 C 0.015 3.985 14 C -0.220 4.220 15 C 0.125 3.875 16 O -0.230 6.230 17 C -0.417 4.417 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.021 2.979 22 H -0.253 1.253 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.261 4.261 26 C -0.050 4.050 27 C 0.468 3.532 28 O -0.486 6.486 29 O -0.368 6.368 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.423 0.577 39 H 0.180 0.820 40 H 0.171 0.829 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.274 0.726 44 H 0.118 0.882 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 30.784 7.604 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.058 3.942 3 C -0.223 4.223 4 C -0.172 4.172 5 C -0.018 4.018 6 H 0.129 0.871 7 N -0.355 5.355 8 C 0.319 3.681 9 O -0.437 6.437 10 C -0.250 4.250 11 C -0.011 4.011 12 C -0.164 4.164 13 C -0.003 4.003 14 C -0.240 4.240 15 C 0.075 3.925 16 O -0.136 6.136 17 C -0.493 4.493 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.186 1.186 25 C -0.280 4.280 26 C -0.068 4.068 27 C 0.307 3.693 28 O -0.369 6.369 29 O -0.287 6.287 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.263 0.737 39 H 0.197 0.803 40 H 0.188 0.812 41 H 0.144 0.856 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.558 29.606 6.738 31.290 hybrid contribution 0.256 -0.917 -0.914 1.320 sum -7.302 28.689 5.824 30.172 Atomic orbital electron populations 1.21978 0.89001 1.03932 1.05081 1.23526 0.97529 0.92172 0.80980 1.22366 1.01212 0.93106 1.05588 1.23367 0.96306 0.99707 0.97793 1.22177 0.87268 1.03608 0.88783 0.87099 1.45608 1.11007 1.20102 1.58819 1.19261 0.85494 0.83724 0.79620 1.91032 1.82534 1.23874 1.46266 1.23008 0.92550 1.02609 1.06827 1.22606 0.99586 0.89217 0.89723 1.18915 0.96453 0.95182 1.05819 1.20710 0.93761 0.91298 0.94568 1.20208 1.00327 0.95420 1.08020 1.20042 0.94190 0.84476 0.93828 1.83868 1.50718 1.18606 1.60430 1.21837 1.04192 0.96638 1.26626 0.88198 1.26664 0.99396 0.96615 0.99404 1.70166 1.26752 1.14022 1.44892 0.84633 0.77161 0.76928 0.77362 1.17695 1.19234 1.18553 1.21092 0.99205 0.97817 1.09915 1.21194 0.98650 0.91623 0.95348 1.24380 0.80258 0.73237 0.91442 1.90700 1.34943 1.51115 1.60111 1.87393 1.32330 1.65507 1.43430 0.86524 0.91410 0.91658 0.92866 0.91397 0.86219 0.85791 0.84208 0.73720 0.80266 0.81170 0.85623 0.87811 0.91711 0.86407 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.82 71.98 0.64 -0.23 16 2 C 0.09 0.96 1.25 -10.33 -0.01 0.95 16 3 C -0.17 -1.04 8.70 71.98 0.63 -0.41 16 4 C -0.13 -0.98 6.08 31.56 0.19 -0.79 16 5 C 0.09 1.76 3.35 45.00 0.15 1.92 16 6 H 0.11 2.79 7.60 -2.39 -0.02 2.77 16 7 N -0.70 -12.20 5.11 -446.87 -2.28 -14.48 16 8 C 0.53 14.02 6.76 86.32 0.58 14.60 16 9 O -0.56 -22.01 11.86 -4.41 -0.05 -22.06 16 10 C -0.23 -4.39 9.90 23.61 0.23 -4.16 16 11 C 0.01 0.18 9.80 23.82 0.23 0.41 16 12 C -0.16 -5.77 4.54 -20.13 -0.09 -5.86 16 13 C 0.01 0.59 6.60 22.55 0.15 0.74 16 14 C -0.22 -10.85 9.97 22.34 0.22 -10.62 16 15 C 0.13 7.00 6.66 22.72 0.15 7.15 16 16 O -0.23 -15.02 9.74 -20.24 -0.20 -15.22 16 17 C -0.42 -26.06 9.48 67.93 0.64 -25.42 16 18 H 0.10 5.77 5.18 -2.91 -0.02 5.76 16 19 C -0.02 -1.40 5.49 84.86 0.47 -0.94 16 20 N -0.92 -59.29 13.67 21.62 0.30 -58.99 16 21 Si 1.02 45.36 29.55 68.60 2.03 47.38 16 22 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 C -0.26 -12.77 9.14 22.34 0.20 -12.57 16 26 C -0.05 -1.96 9.78 22.55 0.22 -1.74 16 27 C 0.47 13.17 7.85 71.49 0.56 13.73 16 28 O -0.49 -18.95 17.98 21.53 0.39 -18.57 16 29 O -0.37 -8.49 10.60 -57.07 -0.60 -9.09 16 30 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.45 7.94 -2.39 -0.02 0.44 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H 0.12 0.55 7.82 -2.39 -0.02 0.53 16 37 H 0.14 -0.01 7.36 -2.39 -0.02 -0.03 16 38 H 0.42 3.24 8.32 -92.71 -0.77 2.47 16 39 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.13 4.26 7.01 -2.91 -0.02 4.24 16 42 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 43 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.12 5.79 5.62 -2.91 -0.02 5.77 16 45 H 0.15 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -98.04 382.13 5.01 -93.03 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.26 Total: 21.23 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 5.17 Total: -23.23 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.99 Total: -73.48 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -0.47 Total: -64.94 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -98.04 5.01 -93.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492192296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.966 kcal (2) G-P(sol) polarization free energy of solvation -98.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds