Wall clock time and date at job start Wed Apr 1 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.66171 * 2 1 4 4 O 1.20823 * 120.00155 * 236.80868 * 3 2 1 5 5 O 1.34226 * 119.99658 * 56.80910 * 3 2 1 6 6 C 1.54619 * 110.74001 * 236.80769 * 2 1 3 7 7 C 1.53998 * 105.04660 * 263.33475 * 6 2 1 8 8 N 1.47484 * 107.08379 * 1.30273 * 7 6 2 9 9 C 1.34775 * 127.03221 * 154.52057 * 8 7 6 10 10 O 1.21721 * 120.00000 * 180.02562 * 9 8 7 11 11 C 1.46254 * 120.00134 * 0.02562 * 9 8 7 12 12 C 1.35024 * 119.99961 * 173.08192 * 11 9 8 13 13 C 1.46969 * 120.00090 * 348.53668 * 12 11 9 14 14 C 1.40024 * 120.10042 * 312.08402 * 13 12 11 15 15 C 1.37592 * 119.89483 * 179.73994 * 14 13 12 16 16 C 1.39179 * 120.10391 * 0.53496 * 15 14 13 17 17 O 1.35565 * 119.90005 * 179.75863 * 16 15 14 18 18 C 1.34780 * 117.00164 * 185.63264 * 17 16 15 19 19 H 1.08004 * 119.99920 * 354.91372 * 18 17 16 20 20 C 1.38721 * 120.00001 * 174.90601 * 18 17 16 21 21 N 1.31503 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47246 * 89.99960 * 22 20 18 24 24 H 1.48494 * 109.47090 * 210.00082 * 22 20 18 25 25 H 1.48504 * 109.47191 * 330.00348 * 22 20 18 26 26 C 1.39175 * 120.19851 * 359.73867 * 16 15 14 27 27 C 1.37598 * 120.10333 * 359.97438 * 26 16 15 28 28 C 1.48114 * 105.93111 * 334.78074 * 8 7 6 29 29 H 1.08997 * 109.46948 * 183.19053 * 1 2 3 30 30 H 1.09000 * 109.46574 * 303.18840 * 1 2 3 31 31 H 1.08998 * 109.46728 * 63.19019 * 1 2 3 32 32 H 0.96705 * 116.99814 * 180.02562 * 5 3 2 33 33 H 1.09002 * 110.33170 * 144.43924 * 6 2 1 34 34 H 1.09001 * 110.32318 * 22.22480 * 6 2 1 35 35 H 1.09007 * 109.91384 * 241.94018 * 7 6 2 36 36 H 1.08998 * 110.07609 * 120.75612 * 7 6 2 37 37 H 1.07998 * 119.99991 * 353.08427 * 11 9 8 38 38 H 1.07997 * 120.00387 * 168.81836 * 12 11 9 39 39 H 1.08004 * 120.04536 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.94786 * 180.27410 * 15 14 13 41 41 H 0.96996 * 120.00096 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.94667 * 179.97438 * 26 16 15 43 43 H 1.08001 * 120.04634 * 180.02562 * 27 26 16 44 44 H 1.09000 * 110.65933 * 157.51020 * 28 8 7 45 45 H 1.09004 * 110.66284 * 280.62189 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0618 1.4101 0.0000 4 8 2.8109 1.7732 -0.8756 5 8 1.7031 2.2625 0.9728 6 6 2.0776 -0.7916 -1.2101 7 6 2.3806 -2.1989 -0.6631 8 7 1.9938 -2.2032 0.7601 9 6 1.6326 -3.2703 1.4999 10 8 1.3359 -3.1263 2.6715 11 6 1.5972 -4.6014 0.8949 12 6 1.3724 -5.6873 1.6652 13 6 1.4138 -5.5708 3.1297 14 6 2.4818 -4.9129 3.7518 15 6 2.5136 -4.8016 5.1229 16 6 1.4921 -5.3514 5.8918 17 8 1.5300 -5.2435 7.2426 18 6 0.5755 -5.8956 7.9356 19 1 -0.2211 -6.4028 7.4115 20 6 0.6164 -5.9156 9.3221 21 7 1.5861 -5.2978 9.9603 22 14 -0.7061 -6.8200 10.2825 23 1 -0.2863 -8.2281 10.4975 24 1 -0.9049 -6.1567 11.5961 25 1 -1.9786 -6.7943 9.5174 26 6 0.4314 -6.0111 5.2780 27 6 0.3882 -6.1222 3.9072 28 6 2.0773 -0.7940 1.2083 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3632 0.5626 0.8601 31 1 -0.3633 0.4635 -0.9172 32 1 2.0695 3.1564 0.9303 33 1 2.9893 -0.3269 -1.5855 34 1 1.3268 -0.8453 -1.9984 35 1 3.4450 -2.4134 -0.7592 36 1 1.8013 -2.9447 -1.2075 37 1 1.7509 -4.7157 -0.1680 38 1 1.1666 -6.6425 1.2052 39 1 3.2770 -4.4895 3.1561 40 1 3.3348 -4.2904 5.6034 41 1 1.6149 -5.3121 10.9297 42 1 -0.3589 -6.4366 5.8786 43 1 -0.4355 -6.6340 3.4318 44 1 1.4539 -0.6326 2.0878 45 1 3.1113 -0.5159 1.4122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492887867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:53 Heat of formation + Delta-G solvation = -91.901073 kcal Electronic energy + Delta-G solvation = -29532.716593 eV Core-core repulsion = 25289.070317 eV Total energy + Delta-G solvation = -4243.646277 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23254 -39.82444 -38.88357 -37.80578 -36.51970 -36.25281 -33.29545 -32.94432 -32.09703 -30.14158 -29.98495 -28.41510 -27.08157 -25.47733 -24.86183 -23.46176 -22.51668 -21.74853 -20.59629 -20.11272 -18.59978 -18.29260 -17.91319 -17.49373 -16.97964 -16.73449 -16.12743 -15.40050 -15.25643 -14.66013 -14.54620 -14.47499 -14.11488 -13.94161 -13.88294 -13.57440 -13.34170 -13.22975 -13.13374 -12.76342 -12.70085 -12.49294 -12.27347 -12.13116 -11.99014 -11.79681 -11.70315 -11.45455 -11.32375 -11.17316 -11.00765 -10.81279 -10.67311 -10.62684 -10.42278 -9.55851 -9.39618 -9.18169 -8.77443 -8.70868 -7.97038 -6.89018 -6.45118 -4.01040 1.23921 1.75557 2.40762 2.49445 2.63560 3.04567 3.14133 3.14907 3.19362 3.52798 3.84259 3.97674 4.16140 4.36981 4.67724 4.75092 4.80219 4.83955 4.90092 5.13279 5.14965 5.24175 5.33533 5.34564 5.39176 5.42911 5.48730 5.54917 5.60571 5.63910 5.73184 5.82534 5.84027 6.03539 6.09787 6.24931 6.33281 6.44302 6.58341 6.78289 7.03021 7.12168 7.35174 7.43358 7.48334 7.50395 7.56271 7.91767 8.01463 8.41949 9.00574 9.72754 10.72839 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002295 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.167274 B =12195.326235 C =13220.472456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C 0.497 3.503 4 O -0.513 6.513 5 O -0.508 6.508 6 C -0.121 4.121 7 C 0.104 3.896 8 N -0.625 5.625 9 C 0.562 3.438 10 O -0.504 6.504 11 C -0.260 4.260 12 C 0.029 3.971 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.198 4.198 16 C 0.169 3.831 17 O -0.173 6.173 18 C -0.390 4.390 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.246 4.246 27 C -0.043 4.043 28 C 0.124 3.876 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 8.104 -23.424 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C 0.339 3.661 4 O -0.401 6.401 5 O -0.319 6.319 6 C -0.159 4.159 7 C -0.020 4.020 8 N -0.362 5.362 9 C 0.355 3.645 10 O -0.379 6.379 11 C -0.281 4.281 12 C 0.009 3.991 13 C -0.185 4.185 14 C -0.020 4.020 15 C -0.217 4.217 16 C 0.115 3.885 17 O -0.076 6.076 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.265 4.265 27 C -0.062 4.062 28 C 0.001 3.999 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.271 0.729 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.442 7.943 -22.497 23.862 hybrid contribution -0.390 0.331 0.168 0.539 sum -0.832 8.274 -22.328 23.827 Atomic orbital electron populations 1.21787 0.90366 1.03984 1.03011 1.21524 0.98669 0.87867 0.99197 1.23018 0.77230 0.87795 0.78062 1.90710 1.34241 1.77989 1.37112 1.84563 1.69837 1.27226 1.50314 1.22660 1.03271 0.94038 0.95949 1.22076 1.00664 0.97114 0.82112 1.48729 1.69384 1.06751 1.11355 1.18179 0.76839 0.83945 0.85584 1.91026 1.47020 1.84894 1.14964 1.22587 1.14024 0.91747 0.99697 1.22370 0.86912 0.96579 0.93219 1.18285 0.99423 1.09600 0.91167 1.20423 0.95780 0.92739 0.93019 1.20003 1.00137 1.08657 0.92914 1.19522 0.92526 0.91751 0.84745 1.83907 1.49221 1.62021 1.12401 1.21390 1.04572 1.31896 0.88767 0.88904 1.25322 0.98186 0.97299 0.95755 1.70019 1.30794 1.39700 1.08956 0.85699 0.79721 0.79036 0.78913 1.19837 1.20242 1.19142 1.20961 1.01682 1.09262 0.94641 1.20713 0.96195 0.96181 0.93064 1.22182 1.01334 0.80618 0.95806 0.90552 0.90803 0.91837 0.72933 0.88540 0.89546 0.91190 0.90196 0.86052 0.85897 0.88139 0.86818 0.91958 0.85629 0.87603 0.88201 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.41 37.16 0.31 -0.74 16 2 C -0.07 -0.59 0.90 -153.97 -0.14 -0.73 16 3 C 0.50 4.46 7.02 36.00 0.25 4.71 16 4 O -0.51 -5.74 16.20 -18.75 -0.30 -6.04 16 5 O -0.51 -3.67 13.25 -39.25 -0.52 -4.19 16 6 C -0.12 -0.85 5.92 -25.36 -0.15 -1.00 16 7 C 0.10 0.78 6.66 -2.98 -0.02 0.76 16 8 N -0.63 -7.04 3.21 -171.68 -0.55 -7.59 16 9 C 0.56 8.20 7.01 -13.04 -0.09 8.11 16 10 O -0.50 -9.72 12.71 5.17 0.07 -9.66 16 11 C -0.26 -3.19 9.42 -37.50 -0.35 -3.54 16 12 C 0.03 0.39 9.77 -37.19 -0.36 0.03 16 13 C -0.18 -3.35 4.34 -105.03 -0.46 -3.80 16 14 C 0.00 -0.02 6.78 -39.15 -0.27 -0.29 16 15 C -0.20 -4.53 9.97 -39.47 -0.39 -4.93 16 16 C 0.17 4.30 6.66 -38.88 -0.26 4.04 16 17 O -0.17 -5.10 9.74 0.76 0.01 -5.09 16 18 C -0.39 -11.11 9.48 30.91 0.29 -10.82 16 19 H 0.09 2.45 5.18 -52.48 -0.27 2.17 16 20 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 22 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.25 -5.60 9.14 -39.47 -0.36 -5.96 16 27 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 28 C 0.12 1.32 5.96 -2.32 -0.01 1.31 16 29 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 1.22 9.10 45.56 0.41 1.64 16 33 H 0.10 0.73 6.85 -51.93 -0.36 0.38 16 34 H 0.09 0.49 7.86 -51.93 -0.41 0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.48 7.07 -51.93 -0.37 0.12 16 37 H 0.12 1.06 6.87 -52.49 -0.36 0.70 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.10 1.81 7.45 -52.48 -0.39 1.42 16 40 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 2.83 5.62 -52.49 -0.29 2.53 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.10 1.24 7.75 -51.93 -0.40 0.84 16 45 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -36.03 379.06 -7.28 -43.31 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.94 Total: 5.70 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.49 Total: -13.07 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.21 Total: -32.36 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.75 Total: -24.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.03 -7.28 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492887867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.590 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds