Wall clock time and date at job start Wed Apr 1 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.66171 * 2 1 4 4 O 1.20823 * 120.00155 * 236.80868 * 3 2 1 5 5 O 1.34226 * 119.99658 * 56.80910 * 3 2 1 6 6 C 1.54619 * 110.74001 * 236.80769 * 2 1 3 7 7 C 1.53998 * 105.04660 * 263.33475 * 6 2 1 8 8 N 1.47484 * 107.08379 * 1.30273 * 7 6 2 9 9 C 1.34775 * 127.03221 * 154.52057 * 8 7 6 10 10 O 1.21721 * 120.00000 * 180.02562 * 9 8 7 11 11 C 1.46254 * 120.00134 * 0.02562 * 9 8 7 12 12 C 1.35024 * 119.99961 * 173.08192 * 11 9 8 13 13 C 1.46969 * 120.00090 * 348.53668 * 12 11 9 14 14 C 1.40024 * 120.10042 * 312.08402 * 13 12 11 15 15 C 1.37592 * 119.89483 * 179.73994 * 14 13 12 16 16 C 1.39179 * 120.10391 * 0.53496 * 15 14 13 17 17 O 1.35565 * 119.90005 * 179.75863 * 16 15 14 18 18 C 1.34780 * 117.00164 * 185.63264 * 17 16 15 19 19 H 1.08004 * 119.99920 * 354.91372 * 18 17 16 20 20 C 1.38721 * 120.00001 * 174.90601 * 18 17 16 21 21 N 1.31503 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47246 * 89.99960 * 22 20 18 24 24 H 1.48494 * 109.47090 * 210.00082 * 22 20 18 25 25 H 1.48504 * 109.47191 * 330.00348 * 22 20 18 26 26 C 1.39175 * 120.19851 * 359.73867 * 16 15 14 27 27 C 1.37598 * 120.10333 * 359.97438 * 26 16 15 28 28 C 1.48114 * 105.93111 * 334.78074 * 8 7 6 29 29 H 1.08997 * 109.46948 * 183.19053 * 1 2 3 30 30 H 1.09000 * 109.46574 * 303.18840 * 1 2 3 31 31 H 1.08998 * 109.46728 * 63.19019 * 1 2 3 32 32 H 0.96705 * 116.99814 * 180.02562 * 5 3 2 33 33 H 1.09002 * 110.33170 * 144.43924 * 6 2 1 34 34 H 1.09001 * 110.32318 * 22.22480 * 6 2 1 35 35 H 1.09007 * 109.91384 * 241.94018 * 7 6 2 36 36 H 1.08998 * 110.07609 * 120.75612 * 7 6 2 37 37 H 1.07998 * 119.99991 * 353.08427 * 11 9 8 38 38 H 1.07997 * 120.00387 * 168.81836 * 12 11 9 39 39 H 1.08004 * 120.04536 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.94786 * 180.27410 * 15 14 13 41 41 H 0.96996 * 120.00096 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.94667 * 179.97438 * 26 16 15 43 43 H 1.08001 * 120.04634 * 180.02562 * 27 26 16 44 44 H 1.09000 * 110.65933 * 157.51020 * 28 8 7 45 45 H 1.09004 * 110.66284 * 280.62189 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0618 1.4101 0.0000 4 8 2.8109 1.7732 -0.8756 5 8 1.7031 2.2625 0.9728 6 6 2.0776 -0.7916 -1.2101 7 6 2.3806 -2.1989 -0.6631 8 7 1.9938 -2.2032 0.7601 9 6 1.6326 -3.2703 1.4999 10 8 1.3359 -3.1263 2.6715 11 6 1.5972 -4.6014 0.8949 12 6 1.3724 -5.6873 1.6652 13 6 1.4138 -5.5708 3.1297 14 6 2.4818 -4.9129 3.7518 15 6 2.5136 -4.8016 5.1229 16 6 1.4921 -5.3514 5.8918 17 8 1.5300 -5.2435 7.2426 18 6 0.5755 -5.8956 7.9356 19 1 -0.2211 -6.4028 7.4115 20 6 0.6164 -5.9156 9.3221 21 7 1.5861 -5.2978 9.9603 22 14 -0.7061 -6.8200 10.2825 23 1 -0.2863 -8.2281 10.4975 24 1 -0.9049 -6.1567 11.5961 25 1 -1.9786 -6.7943 9.5174 26 6 0.4314 -6.0111 5.2780 27 6 0.3882 -6.1222 3.9072 28 6 2.0773 -0.7940 1.2083 29 1 -0.3633 -1.0261 0.0572 30 1 -0.3632 0.5626 0.8601 31 1 -0.3633 0.4635 -0.9172 32 1 2.0695 3.1564 0.9303 33 1 2.9893 -0.3269 -1.5855 34 1 1.3268 -0.8453 -1.9984 35 1 3.4450 -2.4134 -0.7592 36 1 1.8013 -2.9447 -1.2075 37 1 1.7509 -4.7157 -0.1680 38 1 1.1666 -6.6425 1.2052 39 1 3.2770 -4.4895 3.1561 40 1 3.3348 -4.2904 5.6034 41 1 1.6149 -5.3121 10.9297 42 1 -0.3589 -6.4366 5.8786 43 1 -0.4355 -6.6340 3.4318 44 1 1.4539 -0.6326 2.0878 45 1 3.1113 -0.5159 1.4122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492887867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:52 Heat of formation + Delta-G solvation = -116.846261 kcal Electronic energy + Delta-G solvation = -29533.798298 eV Core-core repulsion = 25289.070317 eV Total energy + Delta-G solvation = -4244.727981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.99056 -40.99860 -40.44220 -38.94013 -37.88456 -37.17838 -34.62074 -34.16481 -33.73039 -31.82275 -30.69114 -29.83687 -28.07900 -27.34949 -25.80597 -24.22338 -23.82460 -23.38976 -21.96845 -20.82754 -19.95917 -19.49095 -18.99781 -18.81106 -18.33659 -17.76407 -16.89098 -16.63740 -16.38447 -16.21609 -16.12533 -15.54097 -15.40300 -15.29164 -15.11415 -14.75197 -14.55097 -14.36790 -14.23128 -14.19206 -13.83539 -13.57170 -13.45600 -13.37926 -13.02943 -12.99430 -12.67912 -12.62447 -12.46980 -12.36367 -12.20958 -12.12666 -12.07575 -11.78827 -11.57762 -11.22640 -10.93719 -10.67153 -10.38223 -9.82291 -9.52774 -8.58480 -8.48109 -6.15286 0.03003 0.70946 1.02403 1.07949 1.33918 1.45518 1.52370 1.79397 2.17650 2.23642 2.43353 2.86572 3.14974 3.22494 3.46351 3.50945 3.71110 3.91493 4.02135 4.12860 4.14058 4.16632 4.20704 4.27636 4.51351 4.54063 4.58143 4.61486 4.67257 4.76900 4.79325 4.84871 4.93827 5.05945 5.06674 5.09879 5.15203 5.23767 5.26773 5.31838 5.48947 5.52395 5.67910 5.73087 5.83316 6.02872 6.25492 6.59366 6.90210 6.95981 7.32042 7.78554 8.75422 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002295 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.167274 B =12195.326235 C =13220.472456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C 0.502 3.498 4 O -0.535 6.535 5 O -0.511 6.511 6 C -0.114 4.114 7 C 0.099 3.901 8 N -0.620 5.620 9 C 0.548 3.452 10 O -0.565 6.565 11 C -0.224 4.224 12 C 0.008 3.992 13 C -0.152 4.152 14 C 0.000 4.000 15 C -0.217 4.217 16 C 0.124 3.876 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.022 2.978 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.254 4.254 27 C -0.049 4.049 28 C 0.119 3.881 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.429 0.571 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.073 0.927 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 7.044 -28.577 29.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.068 4.068 3 C 0.344 3.656 4 O -0.425 6.425 5 O -0.324 6.324 6 C -0.152 4.152 7 C -0.023 4.023 8 N -0.354 5.354 9 C 0.341 3.659 10 O -0.445 6.445 11 C -0.244 4.244 12 C -0.012 4.012 13 C -0.153 4.153 14 C -0.018 4.018 15 C -0.236 4.236 16 C 0.074 3.926 17 O -0.139 6.139 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.841 3.159 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.273 4.273 27 C -0.067 4.067 28 C -0.005 4.005 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.292 0.708 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.166 0.834 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.727 6.920 -27.765 28.666 hybrid contribution 0.122 0.895 1.228 1.525 sum -1.605 7.815 -26.537 27.710 Atomic orbital electron populations 1.21757 0.89797 1.03637 1.03555 1.21507 0.99041 0.87547 0.98751 1.23062 0.76641 0.88087 0.77781 1.90705 1.35247 1.78517 1.38033 1.84538 1.69743 1.28468 1.49676 1.22670 1.03723 0.93245 0.95580 1.22400 1.02025 0.98241 0.79613 1.48745 1.67522 1.06184 1.12963 1.18794 0.76353 0.85580 0.85157 1.91028 1.49878 1.85916 1.17661 1.23027 1.09722 0.89626 1.02011 1.22612 0.89102 0.99485 0.89962 1.18873 0.97012 1.04993 0.94382 1.20660 0.97051 0.92532 0.91595 1.20185 0.99701 1.09190 0.94527 1.20003 0.94553 0.94041 0.84050 1.83875 1.50851 1.64820 1.14317 1.21890 1.05086 1.32513 0.89611 0.87983 1.26679 1.00919 0.98122 0.96463 1.70175 1.33795 1.42733 1.09309 0.84548 0.76562 0.77756 0.77068 1.18502 1.19529 1.17602 1.21104 1.00713 1.09017 0.96484 1.21164 0.97677 0.96274 0.91611 1.22170 1.00954 0.81199 0.96140 0.91075 0.91849 0.89951 0.70838 0.88881 0.87313 0.89846 0.87265 0.80841 0.81008 0.86312 0.88164 0.91776 0.86229 0.83381 0.90830 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.41 71.98 0.61 -1.16 16 2 C -0.07 -0.98 0.90 -51.83 -0.05 -1.03 16 3 C 0.50 8.25 7.02 71.24 0.50 8.75 16 4 O -0.54 -11.08 16.20 21.97 0.36 -10.73 16 5 O -0.51 -6.88 13.25 -51.38 -0.68 -7.57 16 6 C -0.11 -1.17 5.92 31.48 0.19 -0.99 16 7 C 0.10 1.01 6.66 86.53 0.58 1.59 16 8 N -0.62 -12.12 3.21 -815.28 -2.61 -14.73 16 9 C 0.55 14.36 7.01 86.33 0.61 14.97 16 10 O -0.57 -21.48 12.71 -4.41 -0.06 -21.53 16 11 C -0.22 -4.17 9.42 23.61 0.22 -3.94 16 12 C 0.01 0.16 9.77 23.82 0.23 0.40 16 13 C -0.15 -5.16 4.34 -20.13 -0.09 -5.25 16 14 C 0.00 0.00 6.78 22.55 0.15 0.15 16 15 C -0.22 -10.59 9.97 22.34 0.22 -10.37 16 16 C 0.12 6.78 6.66 22.72 0.15 6.93 16 17 O -0.23 -14.94 9.74 -20.21 -0.20 -15.14 16 18 C -0.42 -25.35 9.48 67.94 0.64 -24.71 16 19 H 0.10 5.71 5.18 -2.91 -0.02 5.70 16 20 C -0.02 -1.45 5.49 84.86 0.47 -0.98 16 21 N -0.92 -58.68 13.67 21.62 0.30 -58.38 16 22 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 26 C -0.25 -11.94 9.14 22.34 0.20 -11.74 16 27 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 28 C 0.12 2.43 5.96 86.61 0.52 2.94 16 29 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.43 2.07 9.10 -74.05 -0.67 1.39 16 33 H 0.09 1.10 6.85 -2.39 -0.02 1.08 16 34 H 0.11 0.68 7.86 -2.39 -0.02 0.66 16 35 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.11 0.55 7.07 -2.39 -0.02 0.53 16 37 H 0.17 1.53 6.87 -2.91 -0.02 1.51 16 38 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.12 4.17 7.45 -2.91 -0.02 4.15 16 40 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.12 5.63 5.62 -2.91 -0.02 5.61 16 43 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 44 H 0.07 1.90 7.75 -2.39 -0.02 1.88 16 45 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 Total: -1.00 -88.78 379.06 4.87 -83.91 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.37 Total: 23.99 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 5.37 Total: -26.04 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.32 Total: -73.12 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.58 Total: -54.97 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -88.78 4.87 -83.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492887867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.936 kcal (2) G-P(sol) polarization free energy of solvation -88.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds