Wall clock time and date at job start Wed Apr 1 2020 03:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46794 * 299.99656 * 3 2 1 6 6 H 1.48495 * 109.47138 * 59.99859 * 3 2 1 7 7 C 1.38728 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99667 * 180.02562 * 7 2 1 9 9 O 1.34773 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.35576 * 116.99827 * 185.06072 * 9 7 2 11 11 C 1.39177 * 119.89461 * 354.36606 * 10 9 7 12 12 C 1.37597 * 120.09689 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.90227 * 359.97438 * 12 11 10 14 14 C 1.46960 * 120.10376 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00114 * 136.90487 * 14 13 12 16 16 C 1.46251 * 119.99746 * 348.50565 * 15 14 13 17 17 O 1.21728 * 120.00380 * 353.22500 * 16 15 14 18 18 N 1.34778 * 120.00051 * 173.22611 * 16 15 14 19 19 C 1.46499 * 120.00211 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47339 * 179.97438 * 19 18 16 21 21 O 1.45198 * 109.47183 * 64.99761 * 20 19 18 22 22 C 1.34226 * 117.00091 * 180.02562 * 21 20 19 23 23 O 1.20823 * 120.00172 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.99830 * 180.02562 * 22 21 20 25 25 C 1.52998 * 117.49714 * 248.74322 * 24 22 21 26 26 C 1.53004 * 117.49749 * 180.08575 * 24 22 21 27 27 C 1.40029 * 119.79406 * 0.25584 * 13 12 11 28 28 C 1.37600 * 119.89580 * 359.51013 * 27 13 12 29 29 H 0.96995 * 120.00042 * 0.02562 * 1 2 3 30 30 H 1.07987 * 119.95300 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.05408 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.99674 * 316.89869 * 14 13 12 33 33 H 1.07992 * 120.00344 * 168.78102 * 15 14 13 34 34 H 0.97001 * 120.00040 * 359.97438 * 18 16 15 35 35 H 1.09000 * 109.47313 * 300.00027 * 19 18 16 36 36 H 1.09000 * 109.47237 * 59.99364 * 19 18 16 37 37 H 1.09003 * 109.47043 * 184.99959 * 20 19 18 38 38 H 1.09002 * 109.46723 * 304.99984 * 20 19 18 39 39 H 1.09003 * 115.55281 * 34.41816 * 24 22 21 40 40 H 1.09000 * 117.50207 * 0.02562 * 25 24 22 41 41 H 1.09006 * 117.50091 * 145.02212 * 25 24 22 42 42 H 1.08999 * 117.50055 * 214.98138 * 26 24 22 43 43 H 1.09001 * 117.49788 * 359.97438 * 26 24 22 44 44 H 1.07996 * 120.04961 * 179.72472 * 27 13 12 45 45 H 1.07998 * 119.94465 * 180.23277 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0086 -1.2015 0.0005 8 1 3.0886 -1.2015 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0689 -3.5033 0.1076 11 6 3.4588 -3.4341 0.0928 12 6 4.2081 -4.5831 0.2007 13 6 3.5701 -5.8233 0.3261 14 6 4.3660 -7.0534 0.4410 15 6 4.0191 -8.0005 1.3386 16 6 3.0171 -7.7058 2.3623 17 8 2.5863 -6.5738 2.4844 18 7 2.5706 -8.6874 3.1707 19 6 1.5665 -8.3923 4.1959 20 6 1.2355 -9.6707 4.9686 21 8 2.4105 -10.1133 5.6979 22 6 2.2871 -11.2304 6.4318 23 8 1.2323 -11.8186 6.4642 24 6 3.4641 -11.7502 7.2164 25 6 4.0991 -13.0623 6.7513 26 6 3.2605 -13.0289 8.0315 27 6 2.1714 -5.8884 0.3357 28 6 1.4303 -4.7336 0.2321 29 1 -0.4850 0.8400 -0.0004 30 1 3.9500 -2.4773 -0.0044 31 1 5.2867 -4.5286 0.1895 32 1 5.2283 -7.1998 -0.1925 33 1 4.4847 -8.9743 1.3033 34 1 2.9136 -9.5896 3.0733 35 1 1.9586 -7.6430 4.8835 36 1 0.6628 -8.0114 3.7202 37 1 0.4258 -9.4716 5.6706 38 1 0.9275 -10.4483 4.2695 39 1 4.1262 -10.9896 7.6303 40 1 3.6658 -13.5493 5.8777 41 1 5.1789 -13.1650 6.8596 42 1 3.7889 -13.1097 8.9815 43 1 2.2752 -13.4939 8.0007 44 1 1.6750 -6.8431 0.4277 45 1 0.3515 -4.7825 0.2432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492910586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:03 Heat of formation + Delta-G solvation = -66.393566 kcal Electronic energy + Delta-G solvation = -28268.969155 eV Core-core repulsion = 24026.428967 eV Total energy + Delta-G solvation = -4242.540188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02356 -39.73826 -38.72111 -37.85234 -36.59312 -36.29123 -34.68834 -33.04058 -32.13159 -30.35669 -30.10967 -27.92730 -25.95512 -25.39768 -23.74628 -23.04264 -22.23367 -21.75316 -20.97479 -20.79516 -19.32288 -18.43788 -17.92752 -17.35221 -16.98389 -16.95648 -16.56821 -15.66976 -15.39885 -15.12344 -14.73058 -14.53853 -14.28031 -14.12801 -13.80676 -13.50953 -13.42824 -13.25957 -12.98708 -12.83284 -12.79870 -12.50045 -12.17026 -12.16300 -12.01011 -11.68836 -11.36320 -11.27477 -11.18771 -11.11108 -11.00149 -10.85695 -10.68122 -10.59187 -10.39650 -9.50617 -9.41290 -9.15640 -9.01536 -8.68872 -7.91509 -6.85437 -6.45139 -4.00707 1.25024 1.64727 2.12648 2.43424 2.71057 3.14141 3.15547 3.20538 3.20631 3.27569 3.64133 3.97818 4.08764 4.15008 4.24983 4.41490 4.55886 4.67448 4.70815 4.93520 5.02084 5.08353 5.13377 5.16808 5.24181 5.34556 5.36502 5.45279 5.51042 5.55413 5.67009 5.74913 5.85711 5.99699 6.26009 6.33457 6.41821 6.48011 6.60775 6.79836 7.04579 7.13735 7.32941 7.37237 7.45959 7.51439 7.63994 7.93276 8.01813 8.52626 9.00695 9.72799 10.72820 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001768 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.382354 B =15832.006312 C =16459.501737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.190 4.190 14 C 0.028 3.972 15 C -0.267 4.267 16 C 0.539 3.461 17 O -0.511 6.511 18 N -0.735 5.735 19 C 0.124 3.876 20 C 0.056 3.944 21 O -0.348 6.348 22 C 0.492 3.508 23 O -0.509 6.509 24 C -0.173 4.173 25 C -0.148 4.148 26 C -0.147 4.147 27 C 0.012 3.988 28 C -0.203 4.203 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.281 -24.783 10.790 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.009 3.991 15 C -0.288 4.288 16 C 0.329 3.671 17 O -0.387 6.387 18 N -0.389 5.389 19 C 0.000 4.000 20 C -0.018 4.018 21 O -0.265 6.265 22 C 0.335 3.665 23 O -0.397 6.397 24 C -0.192 4.192 25 C -0.185 4.185 26 C -0.184 4.184 27 C -0.007 4.007 28 C -0.222 4.222 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.231 0.769 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.160 -23.850 10.854 27.445 hybrid contribution 0.538 0.354 0.092 0.651 sum 8.699 -23.496 10.947 27.342 Atomic orbital electron populations 1.70031 1.06027 1.27639 1.45720 1.25332 0.95849 0.98918 0.96514 0.85626 0.79186 0.80263 0.78241 1.19034 1.20127 1.20119 1.21448 0.91951 0.80779 1.52374 0.88823 1.83905 1.34790 1.11667 1.77188 1.19529 0.90267 0.87736 0.90828 1.20953 0.93657 0.98798 1.13572 1.20746 0.97894 0.91562 0.95754 1.18298 0.93023 0.92259 1.15522 1.22334 0.93850 0.91298 0.91643 1.22560 1.05191 1.01002 1.00069 1.18499 0.81871 0.84719 0.81964 1.91010 1.57170 1.20420 1.70107 1.45925 1.44227 1.12494 1.36296 1.21352 0.93743 0.94939 0.90002 1.23442 0.86343 0.96908 0.95120 1.86535 1.41176 1.41398 1.57368 1.22588 0.88775 0.78173 0.76925 1.90678 1.29535 1.57816 1.61667 1.21741 0.98880 0.93737 1.04833 1.23055 1.00449 0.95677 0.99292 1.23116 1.02836 0.96488 0.95931 1.20441 0.92108 0.96183 0.91919 1.20003 0.99298 0.90250 1.12676 0.92016 0.85646 0.87603 0.86066 0.86170 0.76927 0.90228 0.88924 0.89376 0.90315 0.84481 0.87950 0.87007 0.87155 0.87193 0.88102 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -11.14 9.48 30.91 0.29 -10.84 16 8 H 0.09 2.49 5.18 -52.49 -0.27 2.21 16 9 O -0.17 -5.11 9.74 0.74 0.01 -5.10 16 10 C 0.17 4.37 6.66 -38.89 -0.26 4.11 16 11 C -0.25 -5.74 9.14 -39.47 -0.36 -6.10 16 12 C -0.04 -0.80 9.78 -39.14 -0.38 -1.18 16 13 C -0.19 -3.51 4.54 -105.02 -0.48 -3.98 16 14 C 0.03 0.39 9.80 -37.19 -0.36 0.03 16 15 C -0.27 -3.32 9.90 -37.51 -0.37 -3.70 16 16 C 0.54 7.82 6.77 -13.04 -0.09 7.74 16 17 O -0.51 -9.83 12.18 5.16 0.06 -9.76 16 18 N -0.74 -7.94 5.50 -61.76 -0.34 -8.28 16 19 C 0.12 1.26 6.07 -4.04 -0.02 1.23 16 20 C 0.06 0.47 5.60 37.16 0.21 0.68 16 21 O -0.35 -3.21 10.17 -39.25 -0.40 -3.61 16 22 C 0.49 4.51 7.74 36.01 0.28 4.79 16 23 O -0.51 -5.94 16.01 -18.75 -0.30 -6.24 16 24 C -0.17 -1.07 6.30 -91.77 -0.58 -1.64 16 25 C -0.15 -0.66 10.24 -26.69 -0.27 -0.94 16 26 C -0.15 -0.72 10.05 -26.69 -0.27 -0.99 16 27 C 0.01 0.24 6.60 -39.14 -0.26 -0.02 16 28 C -0.20 -4.66 9.97 -39.47 -0.39 -5.06 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.13 2.85 5.62 -52.49 -0.29 2.55 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.40 3.26 8.45 -40.82 -0.34 2.91 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.11 0.68 7.67 -51.93 -0.40 0.28 16 44 H 0.10 1.82 7.01 -52.49 -0.37 1.45 16 45 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -35.80 391.87 -8.63 -44.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.89 Total: 6.57 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -3.42 Total: -14.90 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.42 Total: -33.09 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.63 Total: -24.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.80 -8.63 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492910586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.967 kcal (2) G-P(sol) polarization free energy of solvation -35.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds