Wall clock time and date at job start Wed Apr 1 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46794 * 299.99656 * 3 2 1 6 6 H 1.48495 * 109.47138 * 59.99859 * 3 2 1 7 7 C 1.38728 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99667 * 180.02562 * 7 2 1 9 9 O 1.34773 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.35576 * 116.99827 * 185.06072 * 9 7 2 11 11 C 1.39177 * 119.89461 * 354.36606 * 10 9 7 12 12 C 1.37597 * 120.09689 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.90227 * 359.97438 * 12 11 10 14 14 C 1.46960 * 120.10376 * 179.97438 * 13 12 11 15 15 C 1.35020 * 120.00114 * 136.90487 * 14 13 12 16 16 C 1.46251 * 119.99746 * 348.50565 * 15 14 13 17 17 O 1.21728 * 120.00380 * 353.22500 * 16 15 14 18 18 N 1.34778 * 120.00051 * 173.22611 * 16 15 14 19 19 C 1.46499 * 120.00211 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47339 * 179.97438 * 19 18 16 21 21 O 1.45198 * 109.47183 * 64.99761 * 20 19 18 22 22 C 1.34226 * 117.00091 * 180.02562 * 21 20 19 23 23 O 1.20823 * 120.00172 * 359.97438 * 22 21 20 24 24 C 1.50700 * 119.99830 * 180.02562 * 22 21 20 25 25 C 1.52998 * 117.49714 * 248.74322 * 24 22 21 26 26 C 1.53004 * 117.49749 * 180.08575 * 24 22 21 27 27 C 1.40029 * 119.79406 * 0.25584 * 13 12 11 28 28 C 1.37600 * 119.89580 * 359.51013 * 27 13 12 29 29 H 0.96995 * 120.00042 * 0.02562 * 1 2 3 30 30 H 1.07987 * 119.95300 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.05408 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.99674 * 316.89869 * 14 13 12 33 33 H 1.07992 * 120.00344 * 168.78102 * 15 14 13 34 34 H 0.97001 * 120.00040 * 359.97438 * 18 16 15 35 35 H 1.09000 * 109.47313 * 300.00027 * 19 18 16 36 36 H 1.09000 * 109.47237 * 59.99364 * 19 18 16 37 37 H 1.09003 * 109.47043 * 184.99959 * 20 19 18 38 38 H 1.09002 * 109.46723 * 304.99984 * 20 19 18 39 39 H 1.09003 * 115.55281 * 34.41816 * 24 22 21 40 40 H 1.09000 * 117.50207 * 0.02562 * 25 24 22 41 41 H 1.09006 * 117.50091 * 145.02212 * 25 24 22 42 42 H 1.08999 * 117.50055 * 214.98138 * 26 24 22 43 43 H 1.09001 * 117.49788 * 359.97438 * 26 24 22 44 44 H 1.07996 * 120.04961 * 179.72472 * 27 13 12 45 45 H 1.07998 * 119.94465 * 180.23277 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0086 -1.2015 0.0005 8 1 3.0886 -1.2015 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0689 -3.5033 0.1076 11 6 3.4588 -3.4341 0.0928 12 6 4.2081 -4.5831 0.2007 13 6 3.5701 -5.8233 0.3261 14 6 4.3660 -7.0534 0.4410 15 6 4.0191 -8.0005 1.3386 16 6 3.0171 -7.7058 2.3623 17 8 2.5863 -6.5738 2.4844 18 7 2.5706 -8.6874 3.1707 19 6 1.5665 -8.3923 4.1959 20 6 1.2355 -9.6707 4.9686 21 8 2.4105 -10.1133 5.6979 22 6 2.2871 -11.2304 6.4318 23 8 1.2323 -11.8186 6.4642 24 6 3.4641 -11.7502 7.2164 25 6 4.0991 -13.0623 6.7513 26 6 3.2605 -13.0289 8.0315 27 6 2.1714 -5.8884 0.3357 28 6 1.4303 -4.7336 0.2321 29 1 -0.4850 0.8400 -0.0004 30 1 3.9500 -2.4773 -0.0044 31 1 5.2867 -4.5286 0.1895 32 1 5.2283 -7.1998 -0.1925 33 1 4.4847 -8.9743 1.3033 34 1 2.9136 -9.5896 3.0733 35 1 1.9586 -7.6430 4.8835 36 1 0.6628 -8.0114 3.7202 37 1 0.4258 -9.4716 5.6706 38 1 0.9275 -10.4483 4.2695 39 1 4.1262 -10.9896 7.6303 40 1 3.6658 -13.5493 5.8777 41 1 5.1789 -13.1650 6.8596 42 1 3.7889 -13.1097 8.9815 43 1 2.2752 -13.4939 8.0007 44 1 1.6750 -6.8431 0.4277 45 1 0.3515 -4.7825 0.2432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492910586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:02 Heat of formation + Delta-G solvation = -89.904977 kcal Electronic energy + Delta-G solvation = -28269.988687 eV Core-core repulsion = 24026.428967 eV Total energy + Delta-G solvation = -4243.559719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74146 -41.07589 -40.36715 -38.57627 -38.10986 -36.98401 -35.77253 -34.58351 -33.91744 -31.81068 -31.33829 -29.41378 -27.43972 -26.57389 -24.83270 -23.58560 -23.38409 -23.22314 -22.31183 -21.44930 -20.59318 -19.76360 -19.07944 -18.89135 -18.17071 -17.74739 -17.64427 -16.68122 -16.39962 -16.35085 -16.07923 -15.82192 -15.72867 -15.52918 -15.22956 -14.71252 -14.64933 -14.55229 -14.35230 -14.03489 -13.75262 -13.69839 -13.54797 -13.50623 -13.04947 -12.84073 -12.62240 -12.49221 -12.33718 -12.22226 -12.09017 -11.86032 -11.74263 -11.58492 -11.47651 -11.22855 -10.97191 -10.68252 -10.38725 -10.07010 -9.56509 -8.54701 -8.48219 -6.15459 0.00348 0.72704 0.98074 1.13509 1.33673 1.44893 1.48706 1.53047 2.17135 2.31295 2.49488 2.79516 2.87544 3.21637 3.48446 3.53364 3.67790 3.72910 3.88981 3.94383 4.01925 4.08577 4.13216 4.17118 4.18789 4.26253 4.55716 4.57569 4.61582 4.71674 4.73553 4.78493 4.88197 4.98763 5.06596 5.10682 5.17038 5.26583 5.28028 5.29951 5.46517 5.47269 5.69009 5.73601 5.85859 6.03022 6.26157 6.62917 6.67637 6.95690 7.43024 7.78116 8.75037 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001768 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.382354 B =15832.006312 C =16459.501737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.126 3.874 11 C -0.259 4.259 12 C -0.048 4.048 13 C -0.161 4.161 14 C 0.006 3.994 15 C -0.231 4.231 16 C 0.527 3.473 17 O -0.567 6.567 18 N -0.715 5.715 19 C 0.125 3.875 20 C 0.062 3.938 21 O -0.353 6.353 22 C 0.490 3.510 23 O -0.540 6.540 24 C -0.187 4.187 25 C -0.134 4.134 26 C -0.147 4.147 27 C 0.014 3.986 28 C -0.221 4.221 29 H 0.273 0.727 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.396 -28.283 11.426 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.075 3.925 11 C -0.278 4.278 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.013 4.013 15 C -0.251 4.251 16 C 0.318 3.682 17 O -0.447 6.447 18 N -0.369 5.369 19 C 0.001 3.999 20 C -0.012 4.012 21 O -0.269 6.269 22 C 0.336 3.664 23 O -0.431 6.431 24 C -0.206 4.206 25 C -0.171 4.171 26 C -0.184 4.184 27 C -0.004 4.004 28 C -0.241 4.241 29 H 0.082 0.918 30 H 0.137 0.863 31 H 0.166 0.834 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.251 0.749 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.171 0.829 40 H 0.115 0.885 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.322 -27.467 11.503 32.228 hybrid contribution -0.623 0.854 0.059 1.059 sum 11.699 -26.614 11.561 31.286 Atomic orbital electron populations 1.70181 1.08147 1.28798 1.48779 1.26680 0.96902 1.02868 0.95771 0.84485 0.78246 0.74532 0.78624 1.17355 1.19032 1.19384 1.21929 0.92615 0.81389 1.53112 0.87995 1.83873 1.36323 1.12760 1.80855 1.20022 0.91733 0.87555 0.93153 1.21090 0.92802 1.00133 1.13810 1.21189 0.99834 0.90614 0.94922 1.18892 0.92816 0.94244 1.10198 1.22576 0.95335 0.89155 0.94254 1.23032 1.02324 1.02313 0.97422 1.19107 0.82062 0.84378 0.82687 1.91019 1.59262 1.22814 1.71646 1.45793 1.43251 1.12743 1.35105 1.21305 0.93276 0.95561 0.89721 1.23350 0.86326 0.96218 0.95257 1.86531 1.41246 1.41637 1.57480 1.23221 0.89262 0.77524 0.76432 1.90666 1.30953 1.58645 1.62810 1.21908 0.98397 0.94761 1.05505 1.23191 1.01663 0.93592 0.98682 1.23202 1.02526 0.95370 0.97302 1.20690 0.93180 0.95633 0.90935 1.20190 0.99270 0.90959 1.13650 0.91791 0.86293 0.83420 0.81323 0.80907 0.74881 0.91745 0.89427 0.89023 0.89192 0.82950 0.88458 0.84596 0.84979 0.88877 0.86129 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.59 13.67 21.63 0.30 -58.30 16 2 C -0.02 -1.47 5.49 84.86 0.47 -1.01 16 3 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.41 -25.37 9.48 67.94 0.64 -24.72 16 8 H 0.10 5.74 5.18 -2.91 -0.02 5.73 16 9 O -0.23 -14.90 9.74 -20.25 -0.20 -15.10 16 10 C 0.13 6.88 6.66 22.72 0.15 7.04 16 11 C -0.26 -12.23 9.14 22.34 0.20 -12.02 16 12 C -0.05 -1.77 9.78 22.55 0.22 -1.55 16 13 C -0.16 -5.51 4.54 -20.12 -0.09 -5.60 16 14 C 0.01 0.13 9.80 23.82 0.23 0.37 16 15 C -0.23 -4.34 9.90 23.61 0.23 -4.11 16 16 C 0.53 13.51 6.77 86.32 0.58 14.09 16 17 O -0.57 -21.11 12.18 -4.44 -0.05 -21.16 16 18 N -0.72 -13.18 5.50 -467.50 -2.57 -15.75 16 19 C 0.13 2.40 6.07 86.38 0.52 2.92 16 20 C 0.06 0.95 5.60 71.98 0.40 1.35 16 21 O -0.35 -5.82 10.17 -51.38 -0.52 -6.35 16 22 C 0.49 8.25 7.74 71.24 0.55 8.80 16 23 O -0.54 -12.20 16.01 21.97 0.35 -11.85 16 24 C -0.19 -1.87 6.30 -11.54 -0.07 -1.94 16 25 C -0.13 -0.81 10.24 30.62 0.31 -0.49 16 26 C -0.15 -1.14 10.05 30.62 0.31 -0.83 16 27 C 0.01 0.55 6.60 22.55 0.15 0.70 16 28 C -0.22 -10.77 9.97 22.34 0.22 -10.55 16 29 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.12 5.63 5.62 -2.92 -0.02 5.61 16 31 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.41 4.94 8.45 -92.71 -0.78 4.15 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.09 1.20 8.13 -2.39 -0.02 1.18 16 39 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.14 0.18 8.14 -2.38 -0.02 0.16 16 42 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.09 1.06 7.67 -2.39 -0.02 1.04 16 44 H 0.12 4.18 7.01 -2.91 -0.02 4.16 16 45 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -87.59 391.87 4.62 -82.97 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.25 Total: 26.68 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 5.04 Total: -27.56 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -2.28 Total: -74.05 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.42 Total: -54.46 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -87.59 4.62 -82.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492910586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.938 kcal (2) G-P(sol) polarization free energy of solvation -87.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds