Wall clock time and date at job start Wed Apr 1 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 O 1.45198 * 109.44602 * 181.23575 * 11 10 9 13 13 C 1.34227 * 116.99989 * 89.79437 * 12 11 10 14 14 O 1.20831 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00136 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.47257 * 179.97438 * 15 13 12 17 17 C 1.76194 * 100.00136 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00194 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00170 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99895 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00061 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47054 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47313 * 119.99668 * 21 19 17 24 24 H 1.48501 * 109.46536 * 239.99576 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 26 26 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 27 27 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 28 28 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 29 29 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 32 32 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 33 33 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 34 34 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 35 35 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 37 37 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 38 38 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 39 39 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 40 40 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 41 41 H 1.08998 * 109.46753 * 299.99864 * 15 13 12 42 42 H 1.08997 * 109.47058 * 60.00166 * 15 13 12 43 43 H 0.97008 * 119.99924 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49876 * 178.74890 * 25 11 10 45 45 H 1.09005 * 109.52615 * 58.67140 * 25 11 10 46 46 H 1.08998 * 109.58787 * 246.16207 * 26 8 6 47 47 H 1.09007 * 109.58600 * 6.44520 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 8 1.4103 -3.8840 6.3614 13 6 1.6695 -5.0404 6.9917 14 8 2.3670 -5.8735 6.4630 15 6 1.0906 -5.2997 8.3587 16 16 1.6172 -6.9320 8.9372 17 6 0.8213 -6.9711 10.5086 18 1 0.2262 -6.1304 10.8337 19 6 0.9591 -8.0822 11.3289 20 7 1.6840 -9.1070 10.9326 21 14 0.1147 -8.1240 12.9947 22 1 -0.6344 -6.8586 13.2017 23 1 -0.8271 -9.2710 13.0437 24 1 1.1350 -8.2753 14.0630 25 6 2.2622 -2.2141 4.8068 26 6 2.9159 -2.0298 3.4343 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 0.9641 -4.3552 1.8272 37 1 2.5647 -4.7058 2.5255 38 1 0.1087 -3.6744 4.0185 39 1 0.8399 -5.2914 4.1639 40 1 2.9419 -4.2500 4.9934 41 1 1.4426 -4.5368 9.0530 42 1 0.0024 -5.2676 8.3044 43 1 1.7806 -9.8834 11.5060 44 1 2.9275 -1.8319 5.5810 45 1 1.3187 -1.6691 4.8362 46 1 3.9008 -2.4969 3.4332 47 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494470094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:07 Heat of formation + Delta-G solvation = -173.931886 kcal Electronic energy + Delta-G solvation = -28099.422212 eV Core-core repulsion = 23987.662763 eV Total energy + Delta-G solvation = -4111.759448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24151 -40.30207 -38.65510 -36.92238 -35.88519 -34.42635 -32.50492 -32.32945 -31.51062 -29.61375 -27.78446 -27.72873 -25.76558 -25.45540 -23.92970 -22.54115 -21.14931 -20.60357 -19.55470 -18.35176 -17.96364 -17.25154 -16.98375 -16.53067 -15.98613 -15.85391 -15.44816 -14.94477 -14.86563 -14.80423 -14.36323 -14.21020 -14.09657 -13.76768 -13.65219 -13.22443 -13.00617 -12.77917 -12.69379 -12.53814 -12.41269 -12.26610 -12.23777 -11.91652 -11.77492 -11.68392 -11.58272 -11.48144 -11.11198 -11.09940 -10.94697 -10.79962 -10.70699 -10.37918 -10.23477 -10.01793 -9.90614 -9.14270 -9.13018 -8.37923 -6.62493 -6.29467 -4.02105 1.79442 2.48390 2.61915 2.63959 3.18328 3.22376 3.27951 3.43518 3.49018 4.12784 4.33591 4.35620 4.38803 4.46801 4.53058 4.63980 4.74461 4.89747 4.92420 5.01177 5.06642 5.09165 5.16821 5.20144 5.30237 5.31570 5.33012 5.40286 5.44132 5.49182 5.51084 5.60239 5.62398 5.63672 5.75126 5.77066 5.93051 5.94264 5.95875 6.05937 6.13557 6.15542 6.68415 7.02215 7.53859 8.02767 8.13712 8.28624 9.16359 10.78065 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.037352 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.435662 B =16134.080809 C =16300.397113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.655 3.345 7 O -0.568 6.568 8 N -0.597 5.597 9 C 0.132 3.868 10 C -0.152 4.152 11 C 0.088 3.912 12 O -0.355 6.355 13 C 0.479 3.521 14 O -0.487 6.487 15 C -0.129 4.129 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.922 3.078 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.131 4.131 26 C 0.116 3.884 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 20.846 -21.457 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.458 6.458 8 N -0.338 5.338 9 C 0.011 3.989 10 C -0.190 4.190 11 C 0.032 3.968 12 O -0.273 6.273 13 C 0.320 3.680 14 O -0.372 6.372 15 C -0.277 4.277 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.095 0.905 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.748 3.252 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.169 4.169 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.836 19.558 -22.435 29.820 hybrid contribution -1.279 0.812 1.646 2.236 sum 0.558 20.370 -20.790 29.111 Atomic orbital electron populations 1.22516 0.93937 1.05114 1.02508 1.22084 0.94428 0.91525 0.82108 1.21861 1.02244 0.92486 1.03175 1.22513 1.01537 1.03526 0.96462 1.86285 1.71519 1.23547 1.46384 1.17934 0.78555 0.80517 0.81948 1.90892 1.41280 1.70427 1.43166 1.47048 1.53022 1.12345 1.21355 1.21619 1.01067 0.78806 0.97432 1.22379 0.99646 1.03429 0.93568 1.22607 0.97451 0.96666 0.80061 1.86591 1.69452 1.39769 1.31496 1.23331 0.78082 0.79098 0.87462 1.90656 1.35127 1.44947 1.66516 1.23304 1.04607 1.07757 0.92062 1.85404 1.67123 1.10008 1.20691 1.22885 1.36571 1.06338 1.02600 0.90535 1.25005 0.95158 0.94507 0.98852 1.70020 1.37145 1.05843 1.37209 0.86069 0.79054 0.78331 0.81784 1.19505 1.20495 1.20499 1.21999 1.02964 0.94892 0.97085 1.21716 0.93355 0.99604 0.85974 0.92134 0.91148 0.89372 0.91456 0.90141 0.91416 0.89377 0.91150 0.92184 0.87870 0.90354 0.90328 0.89154 0.89320 0.87953 0.87957 0.92110 0.89238 0.90161 0.90572 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.37 37.16 0.31 -1.16 16 2 C 0.14 1.08 1.13 -90.62 -0.10 0.98 16 3 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 4 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 5 O -0.36 -3.54 8.52 -40.32 -0.34 -3.89 16 6 C 0.66 7.35 7.74 54.06 0.42 7.77 16 7 O -0.57 -7.47 11.29 -19.28 -0.22 -7.69 16 8 N -0.60 -5.92 2.98 -178.59 -0.53 -6.45 16 9 C 0.13 1.31 6.43 -3.71 -0.02 1.29 16 10 C -0.15 -1.69 5.73 -26.59 -0.15 -1.84 16 11 C 0.09 1.05 2.41 -26.67 -0.06 0.99 16 12 O -0.35 -5.37 9.88 -39.25 -0.39 -5.76 16 13 C 0.48 8.84 7.95 36.01 0.29 9.12 16 14 O -0.49 -10.19 15.08 -18.75 -0.28 -10.48 16 15 C -0.13 -2.58 6.27 36.01 0.23 -2.36 16 16 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 17 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 18 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 21 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 C -0.13 -1.18 5.74 -26.64 -0.15 -1.33 16 26 C 0.12 0.92 6.44 -3.74 -0.02 0.90 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.90 5.88 -51.93 -0.31 0.59 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.08 7.00 -51.93 -0.36 0.71 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.14 7.16 -51.93 -0.37 0.77 16 41 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 42 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.70 6.93 -51.92 -0.36 0.34 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -33.12 393.93 -8.36 -41.48 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.59 Total: -0.73 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 1.56 Total: 0.16 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.20 Total: -31.27 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.23 Total: -27.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.12 -8.36 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494470094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.456 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds