Wall clock time and date at job start Wed Apr 1 2020 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47021 * 2 1 4 4 C 1.52991 * 109.47361 * 239.99425 * 2 1 3 5 5 O 1.45203 * 109.47089 * 119.99178 * 2 1 3 6 6 C 1.34635 * 116.99531 * 60.00061 * 5 2 1 7 7 O 1.21517 * 120.00303 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00103 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49439 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11621 * 204.63969 * 9 8 6 11 11 C 1.53004 * 113.73988 * 221.94050 * 10 9 8 12 12 C 1.53007 * 109.46804 * 183.07286 * 11 10 9 13 13 O 1.45195 * 109.46700 * 180.02562 * 12 11 10 14 14 C 1.34237 * 116.99956 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00190 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47276 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00022 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00262 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00000 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99776 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00103 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47509 * 89.99382 * 22 20 18 24 24 H 1.48501 * 109.47080 * 209.99261 * 22 20 18 25 25 H 1.48500 * 109.46946 * 329.99219 * 22 20 18 26 26 C 1.47925 * 134.49772 * 0.02562 * 8 6 5 27 27 H 1.08998 * 109.47383 * 300.00728 * 1 2 3 28 28 H 1.09005 * 109.47304 * 60.00233 * 1 2 3 29 29 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46800 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46363 * 299.99466 * 3 2 1 32 32 H 1.08998 * 109.47637 * 59.99427 * 3 2 1 33 33 H 1.09000 * 109.47231 * 300.00556 * 4 2 1 34 34 H 1.09005 * 109.47089 * 60.00206 * 4 2 1 35 35 H 1.09000 * 109.47212 * 179.97438 * 4 2 1 36 36 H 1.09003 * 113.77049 * 90.34034 * 9 8 6 37 37 H 1.08993 * 113.77081 * 318.93795 * 9 8 6 38 38 H 1.09002 * 113.74276 * 90.74001 * 10 9 8 39 39 H 1.08998 * 109.46823 * 303.07465 * 11 10 9 40 40 H 1.08998 * 109.46745 * 63.07477 * 11 10 9 41 41 H 1.08993 * 109.46981 * 300.00091 * 12 11 10 42 42 H 1.08997 * 109.47002 * 60.00092 * 12 11 10 43 43 H 1.09005 * 109.47331 * 300.00000 * 16 14 13 44 44 H 1.09001 * 109.47406 * 59.99770 * 16 14 13 45 45 H 0.97001 * 120.00168 * 180.02562 * 21 20 18 46 46 H 1.09006 * 113.87423 * 41.10256 * 26 8 6 47 47 H 1.08997 * 113.77410 * 269.60428 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6843 1.1857 6 6 1.6522 -1.9721 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6655 2.4169 9 6 1.8732 -4.0477 2.8959 10 6 2.1488 -3.4876 4.3032 11 6 3.0481 -4.3834 5.1575 12 6 3.1948 -3.7754 6.5539 13 8 4.0486 -4.6252 7.3644 14 6 4.2796 -4.2306 8.6265 15 8 3.7843 -3.2091 9.0403 16 6 5.1566 -5.0615 9.5272 17 16 5.2728 -4.2720 11.1518 18 6 6.3248 -5.4205 11.9756 19 1 6.6845 -6.2946 11.4529 20 6 6.6906 -5.2027 13.2967 21 7 6.2519 -4.1377 13.9340 22 14 7.8053 -6.4207 14.1703 23 1 9.2228 -6.0246 13.9726 24 1 7.4909 -6.4266 15.6217 25 1 7.5884 -7.7792 13.6113 26 6 2.9027 -2.3468 3.5958 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2493 36 1 2.6330 -4.7457 2.5443 37 1 0.8575 -4.4200 2.7625 38 1 1.2516 -3.1609 4.8290 39 1 2.6022 -5.3748 5.2378 40 1 4.0299 -4.4632 4.6909 41 1 3.6406 -2.7840 6.4734 42 1 2.2129 -3.6955 7.0204 43 1 4.7253 -6.0565 9.6372 44 1 6.1520 -5.1432 9.0906 45 1 6.5077 -3.9852 14.8571 46 1 2.7083 -1.3620 4.0208 47 1 3.9642 -2.5461 3.4494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495442718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:00 Heat of formation + Delta-G solvation = -160.990404 kcal Electronic energy + Delta-G solvation = -26810.593775 eV Core-core repulsion = 22699.395511 eV Total energy + Delta-G solvation = -4111.198264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93494 -41.40385 -40.36306 -37.80931 -37.48788 -35.12152 -34.59112 -33.75364 -31.35692 -29.38913 -28.39833 -28.33224 -27.68502 -27.26994 -24.97164 -22.79781 -22.31402 -21.22601 -20.28605 -19.85479 -18.85634 -18.55542 -17.83185 -17.66939 -17.44098 -17.13510 -16.87154 -16.45730 -16.02481 -15.96767 -15.60617 -15.27309 -15.04735 -14.59261 -14.48314 -14.28186 -13.96006 -13.59185 -13.48093 -13.36713 -13.17288 -13.13933 -12.97398 -12.90232 -12.89512 -12.87566 -12.76851 -12.60636 -12.52252 -12.20041 -12.16805 -11.79606 -11.73914 -11.50756 -11.42788 -11.33826 -11.13994 -11.07208 -10.34775 -9.87718 -8.71068 -8.35647 -6.14964 0.93732 1.08850 1.18829 1.43400 1.44773 1.56883 1.70993 1.94940 2.25889 2.69931 2.99660 3.20261 3.31893 3.67620 3.72223 3.76914 3.88098 3.91787 4.02126 4.14303 4.17104 4.23192 4.26307 4.42829 4.46783 4.49570 4.53619 4.58299 4.58430 4.59748 4.66785 4.73020 4.79925 4.84358 4.87780 4.97346 5.05859 5.09711 5.23976 5.27452 5.29170 5.43074 5.44206 5.46840 6.20044 6.54985 6.76063 7.06437 7.20137 8.73519 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.001401 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.119461 B =19976.474978 C =20370.312296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.370 6.370 6 C 0.663 3.337 7 O -0.597 6.597 8 N -0.642 5.642 9 C 0.137 3.863 10 C -0.104 4.104 11 C -0.095 4.095 12 C 0.057 3.943 13 O -0.351 6.351 14 C 0.489 3.511 15 O -0.523 6.523 16 C -0.110 4.110 17 S -0.141 6.141 18 C -0.548 4.548 19 H 0.086 0.914 20 C 0.017 3.983 21 N -0.910 5.910 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C 0.105 3.895 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.272 0.728 46 H 0.087 0.913 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 4.067 -29.910 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.285 6.285 6 C 0.420 3.580 7 O -0.489 6.489 8 N -0.385 5.385 9 C 0.017 3.983 10 C -0.123 4.123 11 C -0.133 4.133 12 C -0.017 4.017 13 O -0.268 6.268 14 C 0.332 3.668 15 O -0.411 6.411 16 C -0.258 4.258 17 S 0.086 5.914 18 C -0.696 4.696 19 H 0.105 0.895 20 C -0.188 4.188 21 N -0.546 5.546 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.016 4.016 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.132 5.479 -29.788 31.634 hybrid contribution 0.870 -1.328 0.227 1.604 sum -8.262 4.151 -29.561 30.973 Atomic orbital electron populations 1.22465 0.93983 1.03569 1.03562 1.22430 0.94622 0.92714 0.81577 1.21886 1.02385 0.90736 1.04297 1.22456 1.01558 1.02125 0.97366 1.86329 1.71420 1.23302 1.47420 1.17810 0.78858 0.80732 0.80604 1.90881 1.43172 1.71343 1.43538 1.49005 1.53420 1.15033 1.21032 1.23428 1.03856 0.81972 0.89004 1.22962 0.99828 0.95474 0.94050 1.21428 1.01570 0.99954 0.90360 1.23340 0.93567 0.93799 0.91006 1.86457 1.64485 1.52758 1.23061 1.22912 0.78722 0.83901 0.81313 1.90668 1.49072 1.26011 1.75383 1.23092 1.02535 1.02847 0.97328 1.85530 1.65898 1.35546 1.04421 1.23205 1.34779 1.11075 1.00503 0.89546 1.26097 0.97667 0.97967 0.97108 1.70163 1.44271 1.28114 1.12098 0.84948 0.77842 0.78183 0.76992 1.19314 1.20373 1.18169 1.23700 0.96536 1.00578 0.80797 0.92182 0.88983 0.92039 0.91308 0.87840 0.91419 0.92058 0.88980 0.92055 0.87275 0.89338 0.86949 0.88478 0.88737 0.91055 0.91246 0.86032 0.85968 0.91895 0.89411 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.37 71.98 0.60 -2.22 16 2 C 0.12 1.97 1.13 -10.79 -0.01 1.96 16 3 C -0.14 -1.39 8.85 71.98 0.64 -0.76 16 4 C -0.18 -2.75 8.37 71.98 0.60 -2.14 16 5 O -0.37 -7.71 9.88 -55.45 -0.55 -8.26 16 6 C 0.66 15.09 8.22 129.79 1.07 16.15 16 7 O -0.60 -16.27 12.61 19.79 0.25 -16.02 16 8 N -0.64 -10.95 3.62 -966.05 -3.49 -14.44 16 9 C 0.14 1.53 8.40 86.49 0.73 2.26 16 10 C -0.10 -0.99 3.82 -10.13 -0.04 -1.03 16 11 C -0.10 -0.99 5.43 30.60 0.17 -0.82 16 12 C 0.06 1.08 5.46 71.98 0.39 1.47 16 13 O -0.35 -9.27 10.22 -51.49 -0.53 -9.79 16 14 C 0.49 17.27 7.98 71.23 0.57 17.84 16 15 O -0.52 -22.04 15.61 21.96 0.34 -21.69 16 16 C -0.11 -4.17 6.27 71.23 0.45 -3.73 16 17 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 18 C -0.55 -30.17 9.50 67.96 0.65 -29.53 16 19 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.02 0.92 5.49 84.86 0.47 1.39 16 21 N -0.91 -54.24 13.22 21.65 0.29 -53.96 16 22 Si 1.00 42.26 29.55 68.60 2.03 44.29 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 C 0.11 1.23 8.45 86.42 0.73 1.97 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 34 H 0.09 0.97 8.14 -2.38 -0.02 0.96 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.82 7.88 -2.39 -0.02 0.80 16 41 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 42 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 43 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 44 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 47 H 0.11 0.97 7.92 -2.39 -0.02 0.95 16 Total: -1.00 -76.95 406.24 5.13 -71.82 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.95 Total: 13.89 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 7.00 Total: 2.80 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -3.21 Total: -68.40 kcal Atomic # 8 Polarization: -55.29 SS G_CDS: -0.48 Total: -55.77 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -76.95 5.13 -71.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495442718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.174 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds