Wall clock time and date at job start Wed Apr 1 2020 04:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 S 1.81400 * 109.44311 * 181.23730 * 11 10 9 13 13 C 1.81402 * 102.99997 * 64.79533 * 12 11 10 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 11 15 15 O 1.21207 * 120.00288 * 0.02562 * 14 13 12 16 16 O 1.34315 * 119.99731 * 179.97438 * 14 13 12 17 17 C 1.34920 * 116.99676 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00143 * 0.02562 * 17 16 14 19 19 C 1.38746 * 119.99704 * 179.97438 * 17 16 14 20 20 N 1.31447 * 120.00288 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00062 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47222 * 89.99694 * 21 19 17 23 23 H 1.48506 * 109.47138 * 209.99788 * 21 19 17 24 24 H 1.48492 * 109.46972 * 329.99643 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 26 26 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 27 27 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 28 28 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 29 29 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 32 32 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 33 33 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 34 34 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 35 35 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 37 37 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 38 38 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 39 39 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 40 40 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 41 41 H 1.08996 * 109.47120 * 300.00310 * 13 12 11 42 42 H 1.08999 * 109.46850 * 60.00224 * 13 12 11 43 43 H 0.96998 * 120.00517 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.49876 * 178.74890 * 25 11 10 45 45 H 1.09005 * 109.52615 * 58.67140 * 25 11 10 46 46 H 1.08998 * 109.58787 * 246.16207 * 26 8 6 47 47 H 1.09007 * 109.58600 * 6.44520 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 16 1.2631 -3.9292 6.6890 13 6 1.1717 -5.7338 6.8499 14 6 0.5706 -6.0892 8.1853 15 8 0.2364 -5.2122 8.9523 16 8 0.4041 -7.3780 8.5251 17 6 -0.1400 -7.6271 9.7344 18 1 -0.4202 -6.8077 10.3796 19 6 -0.3405 -8.9361 10.1484 20 7 -0.8701 -9.1789 11.3267 21 14 0.1436 -10.3534 9.0320 22 1 1.5495 -10.7436 9.3086 23 1 -0.7507 -11.5115 9.2862 24 1 0.0167 -9.9320 7.6138 25 6 2.2622 -2.2141 4.8068 26 6 2.9159 -2.0298 3.4343 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 0.9641 -4.3552 1.8272 37 1 2.5647 -4.7058 2.5255 38 1 0.1087 -3.6744 4.0185 39 1 0.8399 -5.2914 4.1639 40 1 2.9419 -4.2500 4.9934 41 1 0.5497 -6.1387 6.0516 42 1 2.1741 -6.1560 6.7791 43 1 -1.0100 -10.0940 11.6164 44 1 2.9275 -1.8319 5.5810 45 1 1.3187 -1.6691 4.8362 46 1 3.9008 -2.4969 3.4332 47 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495526102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:10 Heat of formation + Delta-G solvation = -160.371906 kcal Electronic energy + Delta-G solvation = -28017.525913 eV Core-core repulsion = 23906.354470 eV Total energy + Delta-G solvation = -4111.171444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20072 -39.20362 -38.94275 -36.84624 -35.46357 -34.55391 -33.03504 -32.36640 -31.58678 -29.93158 -27.78692 -27.72931 -26.08916 -25.27436 -23.85682 -22.56747 -20.88062 -20.27094 -19.52166 -18.33983 -18.04839 -17.02352 -16.86713 -16.52238 -16.28107 -15.62440 -15.36278 -14.96913 -14.92871 -14.86459 -14.60129 -14.27728 -14.13785 -13.76585 -13.70396 -13.56684 -13.07845 -12.88618 -12.66209 -12.55760 -12.49361 -12.27068 -12.23961 -12.09562 -11.88886 -11.70460 -11.67433 -11.57630 -11.24498 -11.14504 -11.01912 -10.70805 -10.54480 -10.43849 -10.27817 -9.81696 -9.71937 -9.31048 -9.05290 -8.73025 -7.55593 -6.41073 -4.17684 1.49034 1.79896 2.51657 2.60850 3.06654 3.20760 3.28874 3.34047 3.44753 4.04352 4.20344 4.30642 4.33061 4.36310 4.38752 4.52902 4.65025 4.71808 4.90292 5.01068 5.03317 5.08958 5.12953 5.16863 5.21135 5.26397 5.30495 5.31682 5.37061 5.39783 5.41290 5.48647 5.49099 5.59548 5.61952 5.75366 5.91654 5.93958 5.95403 6.12507 6.14674 6.19310 7.02367 7.65610 7.98800 8.02743 8.53624 8.95846 9.58899 10.67123 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.001921 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.826981 B =14571.904642 C =15041.770290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.569 6.569 8 N -0.595 5.595 9 C 0.130 3.870 10 C -0.133 4.133 11 C -0.079 4.079 12 S -0.173 6.173 13 C -0.089 4.089 14 C 0.422 3.578 15 O -0.519 6.519 16 O -0.247 6.247 17 C -0.382 4.382 18 H 0.111 0.889 19 C 0.067 3.933 20 N -0.872 5.872 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.261 1.261 25 C -0.112 4.112 26 C 0.118 3.882 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.280 0.720 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 17.102 -25.663 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.458 6.458 8 N -0.335 5.335 9 C 0.007 3.993 10 C -0.173 4.173 11 C -0.208 4.208 12 S 0.057 5.943 13 C -0.238 4.238 14 C 0.266 3.734 15 O -0.413 6.413 16 O -0.156 6.156 17 C -0.458 4.458 18 H 0.128 0.872 19 C -0.137 4.137 20 N -0.511 5.511 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.185 1.185 25 C -0.152 4.152 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.780 17.816 -24.825 31.793 hybrid contribution 0.513 -1.772 -1.097 2.147 sum 9.293 16.044 -25.922 31.870 Atomic orbital electron populations 1.22516 0.93908 1.05125 1.02541 1.22080 0.94450 0.91514 0.82078 1.21861 1.02204 0.92508 1.03205 1.22511 1.01477 1.03517 0.96500 1.86287 1.71501 1.23560 1.46378 1.17948 0.78570 0.80530 0.81973 1.90891 1.41286 1.70438 1.43234 1.46984 1.53020 1.12275 1.21256 1.21677 1.00707 0.78936 0.97995 1.22344 0.99295 1.02599 0.93012 1.23310 1.01366 1.00167 0.95951 1.87506 1.82634 1.05062 1.19122 1.22931 1.05431 0.96791 0.98648 1.21835 0.81251 0.82595 0.87732 1.90650 1.49615 1.48896 1.52095 1.83487 1.69120 1.25616 1.37359 1.20657 1.39770 0.95430 0.89919 0.87153 1.24540 0.95587 0.97495 0.96100 1.69603 1.41339 1.21820 1.18314 0.86218 0.78730 0.80518 0.81460 1.19820 1.20656 1.18471 1.21689 1.02866 0.93767 0.96848 1.21742 0.93150 0.99304 0.86432 0.92092 0.91157 0.89371 0.91488 0.90142 0.91388 0.89399 0.91156 0.92234 0.88177 0.90856 0.89848 0.89889 0.89164 0.87299 0.87300 0.90938 0.89208 0.90298 0.90845 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 2 C 0.14 1.07 1.13 -90.62 -0.10 0.97 16 3 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 4 C -0.18 -1.40 8.37 37.16 0.31 -1.09 16 5 O -0.36 -3.50 8.52 -40.32 -0.34 -3.84 16 6 C 0.65 7.12 7.74 54.06 0.42 7.54 16 7 O -0.57 -7.32 11.29 -19.28 -0.22 -7.54 16 8 N -0.59 -5.46 2.98 -178.59 -0.53 -5.99 16 9 C 0.13 1.11 6.43 -3.71 -0.02 1.08 16 10 C -0.13 -1.22 5.29 -26.59 -0.14 -1.36 16 11 C -0.08 -0.77 2.61 -26.67 -0.07 -0.84 16 12 S -0.17 -2.59 20.29 -107.50 -2.18 -4.77 16 13 C -0.09 -1.44 6.23 36.01 0.22 -1.22 16 14 C 0.42 9.84 7.92 36.01 0.29 10.12 16 15 O -0.52 -13.88 15.10 -19.05 -0.29 -14.16 16 16 O -0.25 -6.44 8.58 -20.71 -0.18 -6.62 16 17 C -0.38 -11.32 10.10 30.92 0.31 -11.01 16 18 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 19 C 0.07 1.90 5.49 -17.53 -0.10 1.81 16 20 N -0.87 -25.70 13.96 55.48 0.77 -24.92 16 21 Si 0.91 21.10 28.62 -169.99 -4.86 16.24 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.11 -0.94 5.37 -26.64 -0.14 -1.08 16 26 C 0.12 0.86 6.44 -3.74 -0.02 0.83 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.93 5.88 -51.93 -0.31 0.62 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.95 7.00 -51.93 -0.36 0.59 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.73 6.86 -51.93 -0.36 0.38 16 40 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 41 H 0.11 1.51 7.10 -51.93 -0.37 1.14 16 42 H 0.11 1.49 8.14 -51.92 -0.42 1.07 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.19 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.66 6.93 -51.92 -0.36 0.30 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -34.51 390.04 -7.84 -42.35 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.48 Total: -0.76 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 1.59 Total: 4.15 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.24 Total: -30.92 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.03 Total: -32.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.86 Total: 16.24 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.18 Total: -4.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.51 -7.84 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495526102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.022 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds