Wall clock time and date at job start Wed Apr 1 2020 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46939 * 2 1 4 4 C 1.53000 * 109.46854 * 240.00085 * 2 1 3 5 5 O 1.45193 * 109.47007 * 119.99869 * 2 1 3 6 6 C 1.34640 * 117.00060 * 60.00493 * 5 2 1 7 7 O 1.21508 * 120.00060 * 359.97438 * 6 5 2 8 8 N 1.34783 * 120.00141 * 179.97438 * 6 5 2 9 9 C 1.46919 * 120.63144 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 233.55709 * 9 8 6 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 S 1.81400 * 109.44311 * 181.23730 * 11 10 9 13 13 C 1.81402 * 102.99997 * 64.79533 * 12 11 10 14 14 C 1.50700 * 109.46897 * 179.97438 * 13 12 11 15 15 O 1.21207 * 120.00288 * 0.02562 * 14 13 12 16 16 O 1.34315 * 119.99731 * 179.97438 * 14 13 12 17 17 C 1.34920 * 116.99676 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00143 * 0.02562 * 17 16 14 19 19 C 1.38746 * 119.99704 * 179.97438 * 17 16 14 20 20 N 1.31447 * 120.00288 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00062 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47222 * 89.99694 * 21 19 17 23 23 H 1.48506 * 109.47138 * 209.99788 * 21 19 17 24 24 H 1.48492 * 109.46972 * 329.99643 * 21 19 17 25 25 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 26 26 C 1.46928 * 120.62874 * 0.02562 * 8 6 5 27 27 H 1.09001 * 109.46902 * 299.99937 * 1 2 3 28 28 H 1.08998 * 109.47842 * 60.00145 * 1 2 3 29 29 H 1.08998 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46801 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47026 * 300.00268 * 3 2 1 32 32 H 1.08996 * 109.47101 * 59.99831 * 3 2 1 33 33 H 1.08998 * 109.47007 * 299.99671 * 4 2 1 34 34 H 1.08998 * 109.47019 * 60.00091 * 4 2 1 35 35 H 1.08996 * 109.46799 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.58751 * 353.41659 * 9 8 6 37 37 H 1.08996 * 109.58750 * 113.69843 * 9 8 6 38 38 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 39 39 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 40 40 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 41 41 H 1.08996 * 109.47120 * 300.00310 * 13 12 11 42 42 H 1.08999 * 109.46850 * 60.00224 * 13 12 11 43 43 H 0.96998 * 120.00517 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.49876 * 178.74890 * 25 11 10 45 45 H 1.09005 * 109.52615 * 58.67140 * 25 11 10 46 46 H 1.08998 * 109.58787 * 246.16207 * 26 8 6 47 47 H 1.09007 * 109.58600 * 6.44520 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6812 -4.0715 2.5975 10 6 1.0420 -4.2362 3.9799 11 6 2.0007 -3.7027 5.0473 12 16 1.2631 -3.9292 6.6890 13 6 1.1717 -5.7338 6.8499 14 6 0.5706 -6.0892 8.1853 15 8 0.2364 -5.2122 8.9523 16 8 0.4041 -7.3780 8.5251 17 6 -0.1400 -7.6271 9.7344 18 1 -0.4202 -6.8077 10.3796 19 6 -0.3405 -8.9361 10.1484 20 7 -0.8701 -9.1789 11.3267 21 14 0.1436 -10.3534 9.0320 22 1 1.5495 -10.7436 9.3086 23 1 -0.7507 -11.5115 9.2862 24 1 0.0167 -9.9320 7.6138 25 6 2.2622 -2.2141 4.8068 26 6 2.9159 -2.0298 3.4343 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 0.9641 -4.3552 1.8272 37 1 2.5647 -4.7058 2.5255 38 1 0.1087 -3.6744 4.0185 39 1 0.8399 -5.2914 4.1639 40 1 2.9419 -4.2500 4.9934 41 1 0.5497 -6.1387 6.0516 42 1 2.1741 -6.1560 6.7791 43 1 -1.0100 -10.0940 11.6164 44 1 2.9275 -1.8319 5.5810 45 1 1.3187 -1.6691 4.8362 46 1 3.9008 -2.4969 3.4332 47 1 3.0155 -0.9667 3.2146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495526102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:09 Heat of formation + Delta-G solvation = -181.292677 kcal Electronic energy + Delta-G solvation = -28018.433106 eV Core-core repulsion = 23906.354470 eV Total energy + Delta-G solvation = -4112.078636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93102 -41.17907 -39.63046 -37.62220 -37.49219 -35.22593 -34.54288 -33.76049 -32.32167 -31.39950 -28.34524 -28.27046 -27.44227 -26.75728 -24.55400 -23.31770 -22.19125 -21.49356 -20.25547 -20.19567 -19.12702 -18.66732 -17.71803 -17.49151 -17.28289 -17.11804 -16.71432 -16.29132 -15.90519 -15.61746 -15.52579 -15.29158 -14.97785 -14.96400 -14.64290 -14.43964 -14.33743 -14.20406 -14.03079 -13.55559 -13.22958 -13.14919 -13.08737 -12.87201 -12.84094 -12.76542 -12.44457 -12.41383 -12.35466 -12.29451 -12.22694 -11.88710 -11.87016 -11.77013 -11.36972 -11.26453 -11.03389 -10.86059 -10.79931 -9.78603 -8.73612 -8.56750 -6.45181 0.33516 1.12399 1.24127 1.34305 1.49741 1.50797 1.56216 1.76811 2.25547 2.37024 2.81405 2.88493 3.60377 3.60843 3.77539 3.82234 3.95427 3.97280 4.02431 4.04268 4.14364 4.27990 4.31775 4.32863 4.48967 4.57496 4.63335 4.64599 4.68300 4.74226 4.78741 4.79231 4.85866 4.90348 4.96160 5.05639 5.14266 5.22126 5.29909 5.33578 5.43491 5.45077 5.50671 5.84692 6.28694 6.46903 6.78228 7.26497 7.49386 8.56039 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.001921 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.826981 B =14571.904642 C =15041.770290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.595 6.595 8 N -0.595 5.595 9 C 0.133 3.867 10 C -0.128 4.128 11 C -0.054 4.054 12 S -0.236 6.236 13 C -0.073 4.073 14 C 0.420 3.580 15 O -0.560 6.560 16 O -0.250 6.250 17 C -0.410 4.410 18 H 0.055 0.945 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.267 1.267 24 H -0.246 1.246 25 C -0.109 4.109 26 C 0.123 3.877 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.290 0.710 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.786 16.656 -28.717 35.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.235 4.235 5 O -0.279 6.279 6 C 0.403 3.597 7 O -0.486 6.486 8 N -0.336 5.336 9 C 0.010 3.990 10 C -0.168 4.168 11 C -0.183 4.183 12 S -0.007 6.007 13 C -0.221 4.221 14 C 0.266 3.734 15 O -0.455 6.455 16 O -0.160 6.160 17 C -0.486 4.486 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.555 5.555 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.192 1.192 24 H -0.170 1.170 25 C -0.148 4.148 26 C 0.000 4.000 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.100 0.900 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.078 17.402 -27.858 34.665 hybrid contribution -0.225 -1.418 -0.161 1.444 sum 10.853 15.985 -28.019 34.035 Atomic orbital electron populations 1.22473 0.94393 1.03516 1.03368 1.22386 0.94272 0.92784 0.81686 1.21876 1.02550 0.90634 1.04182 1.22452 1.01690 1.02131 0.97219 1.86293 1.71462 1.22979 1.47205 1.18177 0.78425 0.80878 0.82206 1.90884 1.42403 1.71013 1.44314 1.47145 1.52847 1.12493 1.21110 1.21696 1.01429 0.79024 0.96807 1.22299 0.98424 1.02832 0.93272 1.23388 1.01787 1.01360 0.91734 1.87798 1.83953 1.04708 1.24233 1.22944 1.07143 0.97650 0.94384 1.23343 0.79215 0.81209 0.89654 1.90638 1.50873 1.49811 1.54172 1.83492 1.69656 1.27247 1.35577 1.20295 1.42260 0.94822 0.91233 0.92671 1.25631 0.94668 1.00368 0.97838 1.69708 1.42118 1.23320 1.20401 0.85031 0.79129 0.75972 0.79280 1.18212 1.19155 1.16973 1.21686 1.02478 0.92658 0.97998 1.21838 0.93523 0.99953 0.84713 0.92344 0.89250 0.92096 0.90921 0.88195 0.91396 0.92003 0.89341 0.91750 0.89396 0.88360 0.91793 0.88915 0.86552 0.84290 0.83739 0.89985 0.88259 0.91979 0.88379 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 2 C 0.12 1.82 1.13 -10.79 -0.01 1.81 16 3 C -0.14 -1.16 8.85 71.98 0.64 -0.52 16 4 C -0.18 -2.51 8.37 71.98 0.60 -1.90 16 5 O -0.36 -6.62 8.52 -55.49 -0.47 -7.09 16 6 C 0.65 13.53 7.74 129.79 1.00 14.54 16 7 O -0.59 -15.34 11.29 19.81 0.22 -15.12 16 8 N -0.60 -9.76 2.98 -949.34 -2.82 -12.59 16 9 C 0.13 1.95 6.43 86.36 0.56 2.51 16 10 C -0.13 -2.07 5.29 30.68 0.16 -1.91 16 11 C -0.05 -0.90 2.61 30.63 0.08 -0.82 16 12 S -0.24 -6.83 20.29 -56.49 -1.15 -7.97 16 13 C -0.07 -2.21 6.23 71.24 0.44 -1.76 16 14 C 0.42 19.70 7.92 71.24 0.56 20.26 16 15 O -0.56 -31.20 15.10 20.78 0.31 -30.88 16 16 O -0.25 -13.11 8.58 14.83 0.13 -12.98 16 17 C -0.41 -25.25 10.10 67.94 0.69 -24.57 16 18 H 0.06 3.91 7.09 -2.91 -0.02 3.88 16 19 C 0.02 0.87 5.49 84.87 0.47 1.34 16 20 N -0.92 -55.37 13.96 21.62 0.30 -55.07 16 21 Si 0.99 42.64 28.62 68.60 1.96 44.60 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 25 C -0.11 -1.58 5.37 30.65 0.16 -1.42 16 26 C 0.12 1.43 6.44 86.34 0.56 1.99 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 1.23 5.88 -2.39 -0.01 1.21 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 1.56 7.00 -2.39 -0.02 1.54 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.34 6.86 -2.39 -0.02 1.32 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.14 3.39 7.10 -2.39 -0.02 3.37 16 42 H 0.14 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.29 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 1.14 6.93 -2.38 -0.02 1.12 16 Total: -1.00 -80.93 390.04 5.96 -74.97 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.96 Total: 14.83 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.51 Total: 7.31 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -2.52 Total: -67.66 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: 0.19 Total: -66.08 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.96 Total: 44.60 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.15 Total: -7.97 kcal Total: -80.93 5.96 -74.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495526102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.325 kcal (2) G-P(sol) polarization free energy of solvation -80.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds