Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47308 * 2 1 4 4 C 1.53001 * 109.46715 * 240.00181 * 2 1 3 5 5 O 1.45197 * 109.47336 * 120.00301 * 2 1 3 6 6 C 1.34643 * 117.00238 * 59.99763 * 5 2 1 7 7 O 1.21518 * 119.99733 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00035 * 179.97438 * 6 5 2 9 9 C 1.46923 * 120.63343 * 0.03172 * 8 6 5 10 10 C 1.53195 * 108.77575 * 233.58368 * 9 8 6 11 11 C 1.53046 * 109.30793 * 305.36150 * 10 9 8 12 12 C 1.53043 * 109.53700 * 61.36640 * 11 10 9 13 13 H 1.09000 * 109.49738 * 58.58741 * 12 11 10 14 14 O 1.45204 * 109.49338 * 178.68377 * 12 11 10 15 15 C 1.34228 * 116.99683 * 209.99876 * 14 12 11 16 16 O 1.20826 * 119.99870 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00053 * 180.02562 * 15 14 12 18 18 S 1.81002 * 109.47316 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99945 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00440 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99961 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99695 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 59.99925 * 23 21 19 25 25 H 1.48503 * 109.46718 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47082 * 299.99654 * 23 21 19 27 27 C 1.46931 * 120.62926 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46825 * 299.99487 * 1 2 3 29 29 H 1.08996 * 109.47490 * 60.00181 * 1 2 3 30 30 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47721 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47001 * 300.00738 * 3 2 1 33 33 H 1.09001 * 109.47200 * 59.99650 * 3 2 1 34 34 H 1.08994 * 109.47549 * 299.99501 * 4 2 1 35 35 H 1.09001 * 109.47238 * 60.00027 * 4 2 1 36 36 H 1.08999 * 109.47155 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.59375 * 113.79430 * 9 8 6 38 38 H 1.09006 * 109.58686 * 353.36430 * 9 8 6 39 39 H 1.08990 * 109.49959 * 185.41234 * 10 9 8 40 40 H 1.08999 * 109.49609 * 65.30943 * 10 9 8 41 41 H 1.08998 * 109.45610 * 181.38442 * 11 10 9 42 42 H 1.08998 * 109.46061 * 301.35805 * 11 10 9 43 43 H 1.09005 * 109.47048 * 299.99967 * 17 15 14 44 44 H 1.08999 * 109.47336 * 59.99736 * 17 15 14 45 45 H 0.96998 * 119.99819 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.58511 * 6.62918 * 27 8 6 47 47 H 1.08996 * 109.70113 * 246.27382 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9516 -2.5098 0.5035 8 7 2.0682 -2.6658 2.4165 9 6 2.9160 -2.0300 3.4341 10 6 4.1681 -2.8885 3.6392 11 6 3.7495 -4.3216 3.9759 12 6 2.9475 -4.9074 2.8115 13 1 3.5539 -4.8883 1.9060 14 8 2.5775 -6.2775 3.1189 15 6 2.4466 -7.1204 2.0825 16 8 2.6345 -6.7264 0.9558 17 6 2.0641 -8.5579 2.3240 18 16 1.9696 -9.4312 0.7415 19 6 1.5178 -11.0382 1.3054 20 1 1.3870 -11.2231 2.3614 21 6 1.3300 -12.0667 0.3924 22 7 1.4888 -11.8414 -0.8947 23 14 0.8517 -13.7706 0.9903 24 1 -0.4412 -13.6954 1.7170 25 1 0.7137 -14.6828 -0.1734 26 1 1.9029 -14.2883 1.9025 27 6 1.6812 -4.0716 2.5974 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.3668 -1.9549 4.3726 38 1 3.2066 -1.0347 3.0977 39 1 4.7591 -2.4801 4.4589 40 1 4.7630 -2.8883 2.7258 41 1 4.6384 -4.9289 4.1464 42 1 3.1339 -4.3183 4.8753 43 1 2.8148 -9.0323 2.9561 44 1 1.0942 -8.5974 2.8198 45 1 1.3572 -12.5600 -1.5327 46 1 1.1568 -4.4235 1.7089 47 1 1.0303 -4.1647 3.4667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496118950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = -171.825645 kcal Electronic energy + Delta-G solvation = -28582.616530 eV Core-core repulsion = 24470.948415 eV Total energy + Delta-G solvation = -4111.668115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16322 -40.25656 -38.58433 -36.81901 -35.92486 -34.31577 -32.76181 -32.47551 -31.04952 -29.33020 -27.68107 -27.58788 -26.00185 -25.55677 -23.80891 -22.45585 -21.12760 -20.55897 -19.43555 -18.23616 -17.90630 -17.16079 -16.91990 -16.49435 -16.04499 -15.82804 -15.39030 -14.83843 -14.72051 -14.71475 -14.60441 -14.16828 -13.97110 -13.62870 -13.61323 -13.34990 -12.91492 -12.77785 -12.67090 -12.44816 -12.37823 -12.17781 -12.13734 -11.78180 -11.69271 -11.51602 -11.42673 -11.37105 -11.09447 -11.05552 -10.94716 -10.80928 -10.60708 -10.55151 -10.15663 -9.99021 -9.90000 -9.09875 -9.00138 -8.34973 -6.59249 -6.26005 -3.98835 1.79824 2.59781 2.62873 2.70405 3.22560 3.23531 3.27823 3.46180 3.59262 4.15670 4.42179 4.45868 4.47352 4.50797 4.55438 4.60067 4.65028 4.89386 4.99368 5.09583 5.13781 5.19694 5.23747 5.28413 5.29964 5.40446 5.43330 5.45033 5.49520 5.50700 5.58284 5.62840 5.65645 5.71801 5.76999 5.81558 5.93217 6.04800 6.07712 6.09547 6.19425 6.25720 6.67941 7.11097 7.55947 8.13525 8.16427 8.31068 9.19115 10.81409 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002243 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.953515 B =12479.636155 C =13636.634066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.363 6.363 6 C 0.654 3.346 7 O -0.557 6.557 8 N -0.592 5.592 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.117 4.117 12 C 0.075 3.925 13 H 0.090 0.910 14 O -0.351 6.351 15 C 0.476 3.524 16 O -0.481 6.481 17 C -0.128 4.128 18 S -0.057 6.057 19 C -0.537 4.537 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.922 3.078 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.113 3.887 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.270 0.730 46 H 0.105 0.895 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 26.657 9.547 28.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.278 6.278 6 C 0.408 3.592 7 O -0.445 6.445 8 N -0.334 5.334 9 C -0.014 4.014 10 C -0.170 4.170 11 C -0.155 4.155 12 C 0.018 3.982 13 H 0.108 0.892 14 O -0.269 6.269 15 C 0.317 3.683 16 O -0.365 6.365 17 C -0.276 4.276 18 S 0.169 5.831 19 C -0.685 4.685 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.748 3.252 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.009 4.009 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.124 0.876 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.417 27.012 7.630 28.276 hybrid contribution -0.492 -1.495 1.495 2.171 sum 2.925 25.516 9.125 27.256 Atomic orbital electron populations 1.22519 0.93949 1.05227 1.02392 1.22093 0.94427 0.91435 0.82179 1.21850 1.02206 0.92501 1.03066 1.22529 1.01593 1.03770 0.96341 1.86261 1.71571 1.23503 1.46487 1.17915 0.78964 0.80635 0.81650 1.90955 1.40866 1.70144 1.42540 1.46766 1.53435 1.11467 1.21756 1.21810 0.90941 0.97051 0.91573 1.21933 0.97502 0.94469 1.03138 1.21624 1.00554 0.95677 0.97610 1.22933 0.96132 0.78884 1.00258 0.89162 1.86595 1.80923 1.20460 1.38905 1.23410 0.73647 0.88271 0.82992 1.90693 1.44732 1.77384 1.23734 1.23300 1.05352 0.90177 1.08759 1.85466 1.90985 1.06327 1.00311 1.22801 1.55009 0.94786 0.95900 0.90628 1.25008 0.94699 0.99301 0.94523 1.70002 1.45793 1.33482 1.00920 0.86176 0.79151 0.81634 0.78274 1.19831 1.20788 1.19853 1.21951 0.96470 0.77906 1.04607 0.92264 0.91090 0.89278 0.91492 0.90119 0.91556 0.89154 0.91084 0.92151 0.90806 0.88661 0.89381 0.90943 0.90241 0.90293 0.87909 0.87852 0.92009 0.87627 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 2 C 0.14 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -0.90 8.85 37.15 0.33 -0.57 16 4 C -0.19 -1.92 8.37 37.16 0.31 -1.61 16 5 O -0.36 -4.08 8.53 -40.33 -0.34 -4.42 16 6 C 0.65 8.76 7.74 54.05 0.42 9.18 16 7 O -0.56 -9.16 11.29 -19.29 -0.22 -9.38 16 8 N -0.59 -6.81 2.97 -178.53 -0.53 -7.34 16 9 C 0.11 0.84 6.45 -3.71 -0.02 0.81 16 10 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 11 C -0.12 -1.05 5.55 -26.68 -0.15 -1.20 16 12 C 0.07 0.97 2.60 -26.59 -0.07 0.90 16 13 H 0.09 1.37 7.16 -51.93 -0.37 1.00 16 14 O -0.35 -5.45 9.88 -39.25 -0.39 -5.84 16 15 C 0.48 9.16 7.95 36.00 0.29 9.45 16 16 O -0.48 -10.75 15.08 -18.75 -0.28 -11.04 16 17 C -0.13 -2.61 6.27 36.00 0.23 -2.38 16 18 S -0.06 -1.54 20.58 -107.50 -2.21 -3.75 16 19 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 20 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.11 1.45 6.08 -3.69 -0.02 1.43 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.67 6.93 -51.93 -0.36 0.31 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 1.93 8.14 -51.91 -0.42 1.50 16 44 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.11 1.71 7.00 -51.93 -0.36 1.34 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -34.27 393.95 -8.37 -42.64 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.59 Total: 0.35 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 1.55 Total: 1.84 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.20 Total: -32.57 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.23 Total: -30.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.27 -8.37 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496118950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.187 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds