Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47308 * 2 1 4 4 C 1.53001 * 109.46715 * 240.00181 * 2 1 3 5 5 O 1.45197 * 109.47336 * 120.00301 * 2 1 3 6 6 C 1.34643 * 117.00238 * 59.99763 * 5 2 1 7 7 O 1.21518 * 119.99733 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00035 * 179.97438 * 6 5 2 9 9 C 1.46923 * 120.63343 * 0.03172 * 8 6 5 10 10 C 1.53195 * 108.77575 * 233.58368 * 9 8 6 11 11 C 1.53046 * 109.30793 * 305.36150 * 10 9 8 12 12 C 1.53043 * 109.53700 * 61.36640 * 11 10 9 13 13 H 1.09000 * 109.49738 * 58.58741 * 12 11 10 14 14 O 1.45204 * 109.49338 * 178.68377 * 12 11 10 15 15 C 1.34228 * 116.99683 * 209.99876 * 14 12 11 16 16 O 1.20826 * 119.99870 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00053 * 180.02562 * 15 14 12 18 18 S 1.81002 * 109.47316 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99945 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00440 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99961 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99695 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99887 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47284 * 59.99925 * 23 21 19 25 25 H 1.48503 * 109.46718 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47082 * 299.99654 * 23 21 19 27 27 C 1.46931 * 120.62926 * 179.97438 * 8 6 5 28 28 H 1.09005 * 109.46825 * 299.99487 * 1 2 3 29 29 H 1.08996 * 109.47490 * 60.00181 * 1 2 3 30 30 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47721 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47001 * 300.00738 * 3 2 1 33 33 H 1.09001 * 109.47200 * 59.99650 * 3 2 1 34 34 H 1.08994 * 109.47549 * 299.99501 * 4 2 1 35 35 H 1.09001 * 109.47238 * 60.00027 * 4 2 1 36 36 H 1.08999 * 109.47155 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.59375 * 113.79430 * 9 8 6 38 38 H 1.09006 * 109.58686 * 353.36430 * 9 8 6 39 39 H 1.08990 * 109.49959 * 185.41234 * 10 9 8 40 40 H 1.08999 * 109.49609 * 65.30943 * 10 9 8 41 41 H 1.08998 * 109.45610 * 181.38442 * 11 10 9 42 42 H 1.08998 * 109.46061 * 301.35805 * 11 10 9 43 43 H 1.09005 * 109.47048 * 299.99967 * 17 15 14 44 44 H 1.08999 * 109.47336 * 59.99736 * 17 15 14 45 45 H 0.96998 * 119.99819 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.58511 * 6.62918 * 27 8 6 47 47 H 1.08996 * 109.70113 * 246.27382 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9516 -2.5098 0.5035 8 7 2.0682 -2.6658 2.4165 9 6 2.9160 -2.0300 3.4341 10 6 4.1681 -2.8885 3.6392 11 6 3.7495 -4.3216 3.9759 12 6 2.9475 -4.9074 2.8115 13 1 3.5539 -4.8883 1.9060 14 8 2.5775 -6.2775 3.1189 15 6 2.4466 -7.1204 2.0825 16 8 2.6345 -6.7264 0.9558 17 6 2.0641 -8.5579 2.3240 18 16 1.9696 -9.4312 0.7415 19 6 1.5178 -11.0382 1.3054 20 1 1.3870 -11.2231 2.3614 21 6 1.3300 -12.0667 0.3924 22 7 1.4888 -11.8414 -0.8947 23 14 0.8517 -13.7706 0.9903 24 1 -0.4412 -13.6954 1.7170 25 1 0.7137 -14.6828 -0.1734 26 1 1.9029 -14.2883 1.9025 27 6 1.6812 -4.0716 2.5974 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 2.3668 -1.9549 4.3726 38 1 3.2066 -1.0347 3.0977 39 1 4.7591 -2.4801 4.4589 40 1 4.7630 -2.8883 2.7258 41 1 4.6384 -4.9289 4.1464 42 1 3.1339 -4.3183 4.8753 43 1 2.8148 -9.0323 2.9561 44 1 1.0942 -8.5974 2.8198 45 1 1.3572 -12.5600 -1.5327 46 1 1.1568 -4.4235 1.7089 47 1 1.0303 -4.1647 3.4667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496118950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = -192.596243 kcal Electronic energy + Delta-G solvation = -28583.517211 eV Core-core repulsion = 24470.948415 eV Total energy + Delta-G solvation = -4112.568796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17094 -41.59269 -39.57225 -37.92261 -37.20523 -35.16236 -34.61954 -33.61400 -32.16620 -30.79753 -28.40284 -28.29919 -27.72334 -26.87403 -24.79705 -23.30880 -22.40912 -21.57188 -20.33981 -19.90188 -19.19568 -18.61406 -17.89169 -17.59083 -17.33936 -17.07998 -16.89864 -16.32260 -16.03907 -15.82134 -15.53762 -15.40169 -14.93743 -14.65365 -14.54094 -14.48801 -14.21854 -14.15683 -13.74244 -13.34602 -13.20549 -13.14208 -13.01462 -12.89826 -12.88584 -12.86093 -12.69289 -12.54466 -12.33697 -12.25200 -12.17041 -11.95643 -11.80604 -11.69164 -11.49766 -11.43627 -11.15143 -11.12943 -10.38927 -9.92028 -8.75708 -8.37855 -6.18438 0.78371 1.05628 1.12153 1.40500 1.44583 1.53580 1.64116 1.85090 2.23449 2.74587 2.97046 3.24119 3.49372 3.53956 3.65897 3.72860 3.77171 3.83630 3.92493 3.96648 4.11689 4.16274 4.29702 4.41280 4.44358 4.51260 4.54149 4.58269 4.65371 4.71309 4.73715 4.79033 4.81689 4.87508 4.97089 5.01534 5.10491 5.13955 5.25437 5.27973 5.33189 5.37440 5.40005 5.44421 6.17212 6.17409 6.63281 7.03329 7.16660 8.71247 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.002243 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.953515 B =12479.636155 C =13636.634066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.131 4.131 4 C -0.183 4.183 5 O -0.356 6.356 6 C 0.646 3.354 7 O -0.597 6.597 8 N -0.590 5.590 9 C 0.103 3.897 10 C -0.124 4.124 11 C -0.110 4.110 12 C 0.072 3.928 13 H 0.062 0.938 14 O -0.336 6.336 15 C 0.484 3.516 16 O -0.520 6.520 17 C -0.106 4.106 18 S -0.144 6.144 19 C -0.547 4.547 20 H 0.088 0.912 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 1.002 2.998 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.260 1.260 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.272 0.728 46 H 0.062 0.938 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 28.097 12.745 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.188 4.188 4 C -0.240 4.240 5 O -0.270 6.270 6 C 0.401 3.599 7 O -0.488 6.488 8 N -0.332 5.332 9 C -0.017 4.017 10 C -0.162 4.162 11 C -0.147 4.147 12 C 0.015 3.985 13 H 0.080 0.920 14 O -0.252 6.252 15 C 0.327 3.673 16 O -0.408 6.408 17 C -0.254 4.254 18 S 0.083 5.917 19 C -0.695 4.695 20 H 0.106 0.894 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.823 3.177 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.184 1.184 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.968 28.493 10.880 30.757 hybrid contribution -0.631 -1.781 0.528 1.962 sum 3.337 26.712 11.408 29.238 Atomic orbital electron populations 1.22469 0.94085 1.03313 1.03830 1.22443 0.94572 0.92945 0.81189 1.21860 1.02520 0.89865 1.04574 1.22492 1.01639 1.01865 0.98023 1.86275 1.71329 1.22229 1.47208 1.18195 0.78735 0.81278 0.81668 1.90948 1.42692 1.71069 1.44108 1.46905 1.53543 1.10759 1.22038 1.22158 0.90879 0.97261 0.91417 1.21956 0.97278 0.93018 1.03977 1.21703 1.00293 0.96539 0.96163 1.23263 0.96347 0.77406 1.01448 0.91975 1.86561 1.80269 1.21502 1.36896 1.23150 0.72830 0.88364 0.82973 1.90695 1.46572 1.78065 1.25452 1.23088 1.07301 0.90282 1.04762 1.85645 1.91348 1.08229 1.06517 1.23162 1.54871 0.94835 0.96593 0.89368 1.26168 0.94319 1.04106 0.94523 1.70171 1.47093 1.34995 1.02487 0.84959 0.79346 0.75521 0.77906 1.18583 1.20450 1.18447 1.21790 0.96399 0.78907 1.03454 0.91283 0.89157 0.92786 0.90989 0.88118 0.90522 0.93073 0.89043 0.91949 0.88194 0.87665 0.85537 0.92318 0.89644 0.88108 0.85608 0.85814 0.91878 0.91927 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.37 71.98 0.60 -2.83 16 2 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 3 C -0.13 -1.39 8.85 71.98 0.64 -0.75 16 4 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 5 O -0.36 -7.87 8.53 -55.52 -0.47 -8.35 16 6 C 0.65 17.96 7.74 129.79 1.00 18.97 16 7 O -0.60 -21.39 11.29 19.78 0.22 -21.17 16 8 N -0.59 -13.45 2.97 -949.16 -2.82 -16.27 16 9 C 0.10 1.31 6.45 86.36 0.56 1.87 16 10 C -0.12 -1.37 6.08 30.67 0.19 -1.18 16 11 C -0.11 -1.67 5.55 30.62 0.17 -1.50 16 12 C 0.07 1.85 2.60 30.69 0.08 1.93 16 13 H 0.06 1.98 7.16 -2.39 -0.02 1.96 16 14 O -0.34 -10.21 9.88 -51.39 -0.51 -10.72 16 15 C 0.48 18.99 7.95 71.23 0.57 19.56 16 16 O -0.52 -24.57 15.08 21.96 0.33 -24.24 16 17 C -0.11 -4.31 6.27 71.23 0.45 -3.86 16 18 S -0.14 -8.02 20.58 -56.49 -1.16 -9.19 16 19 C -0.55 -31.03 9.50 67.96 0.65 -30.38 16 20 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 23 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 C 0.12 3.07 6.08 86.37 0.52 3.59 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.45 5.88 -2.38 -0.01 1.43 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 1.18 6.93 -2.38 -0.02 1.16 16 39 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 44 H 0.12 4.54 8.14 -2.40 -0.02 4.52 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.06 2.20 7.00 -2.39 -0.02 2.18 16 47 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -80.37 393.95 5.34 -75.03 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.96 Total: 19.48 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 6.48 Total: 5.68 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.53 Total: -71.94 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -0.43 Total: -64.48 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.19 kcal Total: -80.37 5.34 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496118950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.570 kcal (2) G-P(sol) polarization free energy of solvation -80.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds