Wall clock time and date at job start Wed Apr 1 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99549 * 2 1 4 4 H 1.48496 * 109.47621 * 273.57840 * 3 2 1 5 5 H 1.48502 * 109.46713 * 33.58022 * 3 2 1 6 6 H 1.48500 * 109.46958 * 153.57745 * 3 2 1 7 7 C 1.37869 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00183 * 354.02406 * 7 2 1 9 9 C 1.50709 * 119.99939 * 174.02823 * 7 2 1 10 10 C 1.53001 * 115.54723 * 92.10646 * 9 7 2 11 11 S 1.81402 * 109.47154 * 39.95283 * 10 9 7 12 12 O 1.42101 * 110.54450 * 61.01078 * 11 10 9 13 13 O 1.42094 * 110.54153 * 284.25620 * 11 10 9 14 14 N 1.65607 * 104.44797 * 172.63036 * 11 10 9 15 15 C 1.46499 * 119.99558 * 65.27301 * 14 11 10 16 16 H 1.08996 * 109.47238 * 334.72262 * 15 14 11 17 17 C 1.53005 * 109.46825 * 94.72783 * 15 14 11 18 18 C 1.52994 * 109.47267 * 59.99724 * 17 15 14 19 19 C 1.53000 * 109.47585 * 59.99919 * 18 17 15 20 20 C 1.53005 * 109.46884 * 300.00315 * 19 18 17 21 21 C 1.52994 * 109.47267 * 59.99490 * 20 19 18 22 22 H 1.09002 * 109.47474 * 59.99902 * 21 20 19 23 23 C 1.53005 * 109.47267 * 180.02562 * 21 20 19 24 24 C 1.50699 * 109.46982 * 295.00049 * 23 21 20 25 25 O 1.20825 * 120.00002 * 0.02562 * 24 23 21 26 26 O 1.34230 * 119.99941 * 179.97438 * 24 23 21 27 27 C 1.52997 * 117.51637 * 237.80679 * 9 7 2 28 28 C 1.52996 * 117.49712 * 306.43572 * 9 7 2 29 29 H 0.96991 * 120.00570 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47114 * 279.94722 * 10 9 7 31 31 H 1.09008 * 109.46582 * 159.95027 * 10 9 7 32 32 H 0.96998 * 119.99811 * 244.99963 * 14 11 10 33 33 H 1.08997 * 109.46995 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.46669 * 299.99458 * 17 15 14 35 35 H 1.08997 * 109.47057 * 299.99893 * 18 17 15 36 36 H 1.09005 * 109.47258 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.47799 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.46568 * 59.99624 * 19 18 17 39 39 H 1.08997 * 109.46995 * 299.99559 * 20 19 18 40 40 H 1.09000 * 109.46669 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.46962 * 54.99837 * 23 21 20 42 42 H 1.09003 * 109.47224 * 175.00095 * 23 21 20 43 43 H 0.96697 * 116.99807 * 179.97438 * 26 24 23 44 44 H 1.08996 * 117.50202 * 214.96957 * 27 9 7 45 45 H 1.09001 * 117.50335 * 359.97438 * 27 9 7 46 46 H 1.09001 * 117.49926 * 359.97438 * 28 9 7 47 47 H 1.09007 * 117.49592 * 144.99491 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4209 2.0903 -1.3973 5 1 1.4862 2.6296 0.7744 6 1 3.5824 1.4197 0.6230 7 6 2.0046 -1.1939 -0.0005 8 1 1.4691 -2.1268 0.0964 9 6 3.5055 -1.1973 -0.1363 10 6 4.2871 -1.1783 1.1789 11 16 3.4679 -2.2579 2.3847 12 8 3.4320 -3.5973 1.9114 13 8 2.3018 -1.6325 2.9026 14 7 4.5103 -2.3070 3.6706 15 6 4.7785 -1.0913 4.4429 16 1 4.6021 -0.2168 3.8167 17 6 3.8502 -1.0442 5.6582 18 6 4.0978 -2.2717 6.5371 19 6 5.5537 -2.2772 7.0074 20 6 6.4820 -2.3243 5.7920 21 6 6.2344 -1.0967 4.9131 22 1 6.4339 -0.1922 5.4878 23 6 7.1622 -1.1442 3.6975 24 6 8.5938 -1.0261 4.1533 25 8 8.8461 -0.9157 5.3297 26 8 9.5887 -1.0445 3.2523 27 6 4.1078 -1.9801 -1.3048 28 6 4.1087 -0.4503 -1.3275 29 1 -0.4850 0.8399 -0.0004 30 1 4.3210 -0.1603 1.5667 31 1 5.3023 -1.5343 1.0033 32 1 4.9403 -3.1415 3.9148 33 1 4.0500 -0.1399 6.2331 34 1 2.8130 -1.0403 5.3232 35 1 3.8983 -3.1762 5.9624 36 1 3.4361 -2.2384 7.4027 37 1 5.7300 -3.1514 7.6338 38 1 5.7532 -1.3726 7.5820 39 1 6.2825 -3.2288 5.2174 40 1 7.5192 -2.3277 6.1271 41 1 7.0250 -2.0895 3.1724 42 1 6.9251 -0.3183 3.0268 43 1 10.4904 -0.9653 3.5924 44 1 5.0608 -2.4815 -1.1367 45 1 3.4185 -2.4932 -1.9754 46 1 3.4200 0.0433 -2.0132 47 1 5.0625 0.0548 -1.1741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572528857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:24 Heat of formation + Delta-G solvation = -156.315810 kcal Electronic energy + Delta-G solvation = -30662.292947 eV Core-core repulsion = 26551.297389 eV Total energy + Delta-G solvation = -4110.995558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.79975 -39.16608 -37.14168 -36.40141 -36.18519 -35.00250 -33.53545 -32.81621 -32.19459 -29.57557 -28.56226 -27.55539 -25.56171 -23.00168 -22.62432 -21.75557 -20.87213 -19.99058 -19.42299 -18.45877 -18.33852 -17.25420 -16.72394 -16.58309 -16.23880 -15.67657 -15.30262 -15.16796 -15.02436 -14.38819 -14.29615 -14.15965 -13.87947 -13.48623 -13.03133 -12.98606 -12.68693 -12.63937 -12.43710 -12.40137 -12.12155 -12.09053 -11.65106 -11.32193 -11.23973 -11.13421 -11.09768 -10.98707 -10.85534 -10.83803 -10.62859 -10.59834 -10.47969 -10.37764 -10.12405 -9.96630 -9.77251 -9.27417 -9.11580 -8.67818 -8.50242 -6.21100 -4.32439 1.02785 1.94989 2.77898 3.20571 3.28495 3.31952 3.48172 4.31584 4.33306 4.45492 4.55034 4.60361 4.74448 4.92151 4.98413 5.01415 5.04575 5.08387 5.18058 5.24084 5.29400 5.35991 5.39801 5.44733 5.54004 5.63731 5.75578 5.78556 5.92585 5.96232 6.02052 6.03098 6.05629 6.15476 6.16819 6.23787 6.29215 6.38975 6.44356 6.44828 6.58649 6.80371 7.04185 7.23525 7.56685 7.63329 8.31357 8.82421 9.40820 10.90429 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004531 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.740225 B = 6178.229377 C = 7061.130366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.101 3.899 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.087 0.913 9 C 0.010 3.990 10 C -0.587 4.587 11 S 2.626 3.374 12 O -0.968 6.968 13 O -0.931 6.931 14 N -1.131 6.131 15 C 0.161 3.839 16 H 0.086 0.914 17 C -0.138 4.138 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.080 4.080 22 H 0.093 0.907 23 C -0.119 4.119 24 C 0.480 3.520 25 O -0.513 6.513 26 O -0.518 6.518 27 C -0.173 4.173 28 C -0.189 4.189 29 H 0.269 0.731 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.408 0.592 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.228 -0.841 10.313 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.106 4.106 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.572 4.572 8 H 0.105 0.895 9 C 0.008 3.992 10 C -0.718 4.718 11 S 2.720 3.280 12 O -0.958 6.958 13 O -0.921 6.921 14 N -0.888 5.888 15 C 0.053 3.947 16 H 0.104 0.896 17 C -0.177 4.177 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.100 4.100 22 H 0.111 0.889 23 C -0.157 4.157 24 C 0.323 3.677 25 O -0.401 6.401 26 O -0.330 6.330 27 C -0.210 4.210 28 C -0.227 4.227 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.267 0.733 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.775 -1.018 10.414 18.930 hybrid contribution 1.835 1.153 -0.008 2.167 sum 17.610 0.135 10.406 20.455 Atomic orbital electron populations 1.69876 1.06561 1.27550 1.46654 1.24923 0.94454 0.98993 0.92193 0.86892 0.80638 0.83510 0.78433 1.20245 1.21553 1.18267 1.20400 0.86338 0.95629 1.54853 0.89529 1.18731 0.94471 1.02268 0.83757 1.30360 1.10457 1.15649 1.15317 1.04666 0.74298 0.75314 0.73674 1.93507 1.86293 1.34775 1.81246 1.93572 1.43606 1.78124 1.76791 1.56331 1.67633 1.16816 1.48047 1.20693 0.93451 0.86945 0.93624 0.89593 1.22045 1.01299 0.98427 0.95920 1.21499 0.95988 0.98953 0.99215 1.21507 0.94912 1.01758 0.97179 1.21721 1.00921 0.96792 0.96490 1.21311 0.92852 1.01177 0.94659 0.88862 1.21573 0.86688 1.06592 1.00801 1.23582 0.88696 0.71527 0.83880 1.90694 1.85044 1.45490 1.18910 1.84576 1.19789 1.85151 1.43474 1.22962 1.01010 0.93182 1.03886 1.22944 1.01127 0.94755 1.03878 0.92128 0.86181 0.87455 0.75706 0.91189 0.89360 0.91604 0.92033 0.92186 0.91956 0.92082 0.90260 0.87071 0.87161 0.73323 0.90566 0.88822 0.89039 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.96 55.43 0.77 -25.46 16 2 C 0.10 2.85 5.46 -17.82 -0.10 2.75 16 3 Si 0.88 20.82 24.98 -169.99 -4.25 16.57 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -5.49 5.46 56.52 0.31 -5.18 16 7 C -0.54 -14.67 7.55 -34.44 -0.26 -14.93 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 C 0.01 0.23 1.11 -155.66 -0.17 0.05 16 10 C -0.59 -10.63 5.88 37.16 0.22 -10.41 16 11 S 2.63 50.34 4.52 -107.50 -0.49 49.85 16 12 O -0.97 -21.23 18.08 -57.54 -1.04 -22.27 16 13 O -0.93 -21.68 16.28 -57.54 -0.94 -22.62 16 14 N -1.13 -14.87 3.96 -4.89 -0.02 -14.89 16 15 C 0.16 1.86 2.33 -67.93 -0.16 1.70 16 16 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 17 C -0.14 -1.64 5.63 -26.73 -0.15 -1.79 16 18 C -0.12 -1.27 5.76 -26.73 -0.15 -1.42 16 19 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 20 C -0.12 -1.15 4.76 -26.73 -0.13 -1.27 16 21 C -0.08 -0.76 1.66 -90.62 -0.15 -0.91 16 22 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 23 C -0.12 -1.04 5.05 -27.88 -0.14 -1.18 16 24 C 0.48 4.47 8.05 36.01 0.29 4.76 16 25 O -0.51 -5.93 14.73 -18.75 -0.28 -6.21 16 26 O -0.52 -3.94 13.42 -39.26 -0.53 -4.46 16 27 C -0.17 -3.43 9.88 -26.73 -0.26 -3.69 16 28 C -0.19 -3.79 7.54 -26.73 -0.20 -3.99 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.12 2.03 6.11 -51.93 -0.32 1.71 16 31 H 0.11 1.49 7.95 -51.92 -0.41 1.08 16 32 H 0.41 4.57 6.78 -34.47 -0.23 4.34 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.28 7.40 -51.93 -0.38 0.90 16 35 H 0.07 0.75 7.44 -51.93 -0.39 0.36 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.54 6.51 -51.93 -0.34 0.21 16 40 H 0.08 0.81 5.96 -51.93 -0.31 0.50 16 41 H 0.11 0.88 7.76 -51.93 -0.40 0.48 16 42 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.41 1.42 9.10 45.56 0.41 1.84 16 44 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 46 H 0.09 1.94 7.01 -51.93 -0.36 1.58 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -36.06 374.94 -9.19 -45.25 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.56 Total: 10.15 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -1.53 Total: -31.56 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.75 Total: -40.35 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -2.78 Total: -55.56 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.25 Total: 16.57 kcal Atomic # 16 Polarization: 50.34 SS G_CDS: -0.49 Total: 49.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.06 -9.19 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572528857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.066 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds