Wall clock time and date at job start Wed Apr 1 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99549 * 2 1 4 4 H 1.48496 * 109.47621 * 273.57840 * 3 2 1 5 5 H 1.48502 * 109.46713 * 33.58022 * 3 2 1 6 6 H 1.48500 * 109.46958 * 153.57745 * 3 2 1 7 7 C 1.37869 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00183 * 354.02406 * 7 2 1 9 9 C 1.50709 * 119.99939 * 174.02823 * 7 2 1 10 10 C 1.53001 * 115.54723 * 92.10646 * 9 7 2 11 11 S 1.81402 * 109.47154 * 39.95283 * 10 9 7 12 12 O 1.42101 * 110.54450 * 61.01078 * 11 10 9 13 13 O 1.42094 * 110.54153 * 284.25620 * 11 10 9 14 14 N 1.65607 * 104.44797 * 172.63036 * 11 10 9 15 15 C 1.46499 * 119.99558 * 65.27301 * 14 11 10 16 16 H 1.08996 * 109.47238 * 334.72262 * 15 14 11 17 17 C 1.53005 * 109.46825 * 94.72783 * 15 14 11 18 18 C 1.52994 * 109.47267 * 59.99724 * 17 15 14 19 19 C 1.53000 * 109.47585 * 59.99919 * 18 17 15 20 20 C 1.53005 * 109.46884 * 300.00315 * 19 18 17 21 21 C 1.52994 * 109.47267 * 59.99490 * 20 19 18 22 22 H 1.09002 * 109.47474 * 59.99902 * 21 20 19 23 23 C 1.53005 * 109.47267 * 180.02562 * 21 20 19 24 24 C 1.50699 * 109.46982 * 295.00049 * 23 21 20 25 25 O 1.20825 * 120.00002 * 0.02562 * 24 23 21 26 26 O 1.34230 * 119.99941 * 179.97438 * 24 23 21 27 27 C 1.52997 * 117.51637 * 237.80679 * 9 7 2 28 28 C 1.52996 * 117.49712 * 306.43572 * 9 7 2 29 29 H 0.96991 * 120.00570 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47114 * 279.94722 * 10 9 7 31 31 H 1.09008 * 109.46582 * 159.95027 * 10 9 7 32 32 H 0.96998 * 119.99811 * 244.99963 * 14 11 10 33 33 H 1.08997 * 109.46995 * 179.97438 * 17 15 14 34 34 H 1.09000 * 109.46669 * 299.99458 * 17 15 14 35 35 H 1.08997 * 109.47057 * 299.99893 * 18 17 15 36 36 H 1.09005 * 109.47258 * 180.02562 * 18 17 15 37 37 H 1.08992 * 109.47799 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.46568 * 59.99624 * 19 18 17 39 39 H 1.08997 * 109.46995 * 299.99559 * 20 19 18 40 40 H 1.09000 * 109.46669 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.46962 * 54.99837 * 23 21 20 42 42 H 1.09003 * 109.47224 * 175.00095 * 23 21 20 43 43 H 0.96697 * 116.99807 * 179.97438 * 26 24 23 44 44 H 1.08996 * 117.50202 * 214.96957 * 27 9 7 45 45 H 1.09001 * 117.50335 * 359.97438 * 27 9 7 46 46 H 1.09001 * 117.49926 * 359.97438 * 28 9 7 47 47 H 1.09007 * 117.49592 * 144.99491 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4209 2.0903 -1.3973 5 1 1.4862 2.6296 0.7744 6 1 3.5824 1.4197 0.6230 7 6 2.0046 -1.1939 -0.0005 8 1 1.4691 -2.1268 0.0964 9 6 3.5055 -1.1973 -0.1363 10 6 4.2871 -1.1783 1.1789 11 16 3.4679 -2.2579 2.3847 12 8 3.4320 -3.5973 1.9114 13 8 2.3018 -1.6325 2.9026 14 7 4.5103 -2.3070 3.6706 15 6 4.7785 -1.0913 4.4429 16 1 4.6021 -0.2168 3.8167 17 6 3.8502 -1.0442 5.6582 18 6 4.0978 -2.2717 6.5371 19 6 5.5537 -2.2772 7.0074 20 6 6.4820 -2.3243 5.7920 21 6 6.2344 -1.0967 4.9131 22 1 6.4339 -0.1922 5.4878 23 6 7.1622 -1.1442 3.6975 24 6 8.5938 -1.0261 4.1533 25 8 8.8461 -0.9157 5.3297 26 8 9.5887 -1.0445 3.2523 27 6 4.1078 -1.9801 -1.3048 28 6 4.1087 -0.4503 -1.3275 29 1 -0.4850 0.8399 -0.0004 30 1 4.3210 -0.1603 1.5667 31 1 5.3023 -1.5343 1.0033 32 1 4.9403 -3.1415 3.9148 33 1 4.0500 -0.1399 6.2331 34 1 2.8130 -1.0403 5.3232 35 1 3.8983 -3.1762 5.9624 36 1 3.4361 -2.2384 7.4027 37 1 5.7300 -3.1514 7.6338 38 1 5.7532 -1.3726 7.5820 39 1 6.2825 -3.2288 5.2174 40 1 7.5192 -2.3277 6.1271 41 1 7.0250 -2.0895 3.1724 42 1 6.9251 -0.3183 3.0268 43 1 10.4904 -0.9653 3.5924 44 1 5.0608 -2.4815 -1.1367 45 1 3.4185 -2.4932 -1.9754 46 1 3.4200 0.0433 -2.0132 47 1 5.0625 0.0548 -1.1741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572528857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:23 Heat of formation + Delta-G solvation = -184.632871 kcal Electronic energy + Delta-G solvation = -30663.520867 eV Core-core repulsion = 26551.297389 eV Total energy + Delta-G solvation = -4112.223478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48594 -39.96988 -38.78822 -37.82492 -37.01218 -36.63035 -34.50441 -34.26563 -33.59677 -30.47490 -30.05813 -28.32572 -27.57928 -23.75501 -23.43489 -23.30554 -21.70807 -21.27111 -20.74867 -19.77966 -19.01411 -18.62977 -18.30291 -17.48087 -17.11447 -16.88603 -16.72630 -16.62495 -16.09152 -15.78762 -15.38751 -15.24112 -14.92131 -14.81303 -14.50429 -14.16798 -14.13524 -13.80018 -13.43585 -13.27641 -13.13758 -12.92382 -12.89881 -12.81644 -12.74184 -12.58730 -12.38486 -12.21608 -12.16045 -12.00166 -11.89216 -11.78868 -11.63784 -11.60828 -11.38767 -11.26019 -10.89492 -10.83193 -10.67323 -10.39053 -10.06735 -8.32574 -6.48608 -0.44885 1.32297 1.35452 1.38288 1.50539 2.16685 2.24467 2.36813 2.98152 3.06951 3.21852 3.54898 3.64008 3.71553 3.81028 3.92015 4.19343 4.19800 4.25724 4.28984 4.38515 4.40637 4.49707 4.53438 4.54141 4.65200 4.67973 4.69747 4.76942 4.84310 4.90774 4.98206 5.03147 5.13754 5.21834 5.25184 5.29648 5.32803 5.39623 5.51537 5.52303 5.60195 5.65970 5.77230 6.17901 6.23770 6.65576 7.10502 7.28503 8.84196 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.004531 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.740225 B = 6178.229377 C = 7061.130366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.036 3.964 3 Si 0.931 3.069 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.207 1.207 7 C -0.535 4.535 8 H 0.024 0.976 9 C -0.028 4.028 10 C -0.575 4.575 11 S 2.623 3.377 12 O -1.008 7.008 13 O -0.988 6.988 14 N -1.109 6.109 15 C 0.155 3.845 16 H 0.095 0.905 17 C -0.143 4.143 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.070 4.070 22 H 0.100 0.900 23 C -0.126 4.126 24 C 0.486 3.514 25 O -0.542 6.542 26 O -0.517 6.517 27 C -0.169 4.169 28 C -0.173 4.173 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.420 0.580 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.425 0.575 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.133 0.742 10.358 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.164 4.164 3 Si 0.754 3.246 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.128 1.128 7 C -0.572 4.572 8 H 0.043 0.957 9 C -0.031 4.031 10 C -0.708 4.708 11 S 2.721 3.279 12 O -0.998 6.998 13 O -0.977 6.977 14 N -0.870 5.870 15 C 0.048 3.952 16 H 0.113 0.887 17 C -0.182 4.182 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.090 4.090 22 H 0.118 0.882 23 C -0.163 4.163 24 C 0.330 3.670 25 O -0.432 6.432 26 O -0.331 6.331 27 C -0.206 4.206 28 C -0.211 4.211 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.182 0.818 32 H 0.257 0.743 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.287 0.713 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 20.717 0.514 10.460 23.213 hybrid contribution 0.285 0.525 -0.026 0.597 sum 21.001 1.039 10.434 23.473 Atomic orbital electron populations 1.70059 1.09051 1.28539 1.49706 1.25975 0.95171 1.03552 0.91749 0.86029 0.81453 0.77700 0.79457 1.18814 1.22491 1.12837 1.20517 0.89807 0.93159 1.53717 0.95733 1.18687 0.91734 1.06020 0.86616 1.30165 1.12246 1.16494 1.11882 1.04291 0.74478 0.74549 0.74591 1.93444 1.87138 1.36970 1.82269 1.93515 1.47382 1.78792 1.78056 1.55720 1.66495 1.18246 1.46582 1.20939 0.94900 0.86176 0.93222 0.88679 1.22069 0.99512 0.99913 0.96740 1.21495 0.97344 0.97861 0.98987 1.21469 0.93562 1.02395 0.97426 1.21719 1.00576 0.97084 0.96503 1.21193 0.91181 1.01391 0.95243 0.88221 1.21666 0.86139 1.08002 1.00526 1.23610 0.89171 0.70722 0.83483 1.90695 1.85506 1.46967 1.20070 1.84528 1.20814 1.84628 1.43121 1.23076 1.02062 0.93770 1.01654 1.23050 1.02215 0.94872 1.00936 0.92284 0.84037 0.81807 0.74325 0.89267 0.92811 0.92827 0.91823 0.91487 0.91424 0.91714 0.90544 0.85982 0.85235 0.71331 0.86392 0.90902 0.90809 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.96 21.44 0.30 -59.34 16 2 C 0.04 2.08 5.46 84.65 0.46 2.54 16 3 Si 0.93 41.50 24.98 68.60 1.71 43.21 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.21 -7.40 5.46 99.48 0.54 -6.86 16 7 C -0.53 -30.23 7.55 25.60 0.19 -30.04 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 9 C -0.03 -1.19 1.11 -52.93 -0.06 -1.25 16 10 C -0.58 -18.37 5.88 71.98 0.42 -17.94 16 11 S 2.62 99.30 4.52 -56.49 -0.26 99.04 16 12 O -1.01 -44.84 18.08 -127.65 -2.31 -47.15 16 13 O -0.99 -47.85 16.28 -127.65 -2.08 -49.93 16 14 N -1.11 -27.11 3.96 -169.39 -0.67 -27.78 16 15 C 0.15 3.18 2.33 44.99 0.10 3.28 16 16 H 0.10 1.81 7.34 -2.39 -0.02 1.79 16 17 C -0.14 -3.29 5.63 30.59 0.17 -3.11 16 18 C -0.12 -2.45 5.76 30.59 0.18 -2.28 16 19 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 20 C -0.12 -1.95 4.76 30.59 0.15 -1.81 16 21 C -0.07 -1.08 1.66 -10.79 -0.02 -1.10 16 22 H 0.10 1.49 7.96 -2.39 -0.02 1.47 16 23 C -0.13 -1.59 5.05 29.85 0.15 -1.44 16 24 C 0.49 7.09 8.05 71.24 0.57 7.67 16 25 O -0.54 -10.83 14.73 21.97 0.32 -10.51 16 26 O -0.52 -5.63 13.42 -51.42 -0.69 -6.32 16 27 C -0.17 -6.13 9.88 30.59 0.30 -5.83 16 28 C -0.17 -6.12 7.54 30.59 0.23 -5.89 16 29 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.14 3.93 6.11 -2.39 -0.01 3.92 16 31 H 0.16 3.38 7.95 -2.39 -0.02 3.36 16 32 H 0.42 8.59 6.78 -96.75 -0.66 7.93 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.62 7.40 -2.39 -0.02 1.60 16 35 H 0.05 1.21 7.44 -2.39 -0.02 1.19 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.98 6.51 -2.39 -0.02 0.96 16 40 H 0.08 1.35 5.96 -2.39 -0.01 1.33 16 41 H 0.12 1.29 7.76 -2.39 -0.02 1.28 16 42 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.43 1.36 9.10 -74.06 -0.67 0.68 16 44 H 0.12 3.30 8.08 -2.39 -0.02 3.28 16 45 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.07 2.89 7.01 -2.39 -0.02 2.88 16 47 H 0.12 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -86.01 374.94 -1.12 -87.13 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.49 Total: 30.48 kcal Atomic # 6 Polarization: -61.88 SS G_CDS: 3.04 Total: -58.84 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -0.37 Total: -87.12 kcal Atomic # 8 Polarization: -109.15 SS G_CDS: -4.75 Total: -113.91 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.71 Total: 43.21 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.26 Total: 99.04 kcal Total: -86.01 -1.12 -87.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572528857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.506 kcal (2) G-P(sol) polarization free energy of solvation -86.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds