Wall clock time and date at job start Wed Apr 1 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47532 * 270.00359 * 3 2 1 5 5 H 1.48500 * 109.47159 * 30.00228 * 3 2 1 6 6 H 1.48497 * 109.47206 * 150.00174 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00694 * 172.22660 * 7 2 1 9 9 C 1.50709 * 119.99765 * 352.22828 * 7 2 1 10 10 C 1.52996 * 115.54911 * 84.78258 * 9 7 2 11 11 S 1.81403 * 109.47113 * 65.20252 * 10 9 7 12 12 O 1.42096 * 110.54313 * 62.35593 * 11 10 9 13 13 O 1.42102 * 110.54105 * 285.60679 * 11 10 9 14 14 N 1.65598 * 104.44913 * 173.98248 * 11 10 9 15 15 C 1.47157 * 120.98208 * 270.02145 * 14 11 10 16 16 C 1.53301 * 108.38459 * 230.51454 * 15 14 11 17 17 O 1.42967 * 109.22120 * 307.69962 * 16 15 14 18 18 C 1.42956 * 114.16813 * 62.57869 * 17 16 15 19 19 H 1.09006 * 109.55519 * 57.37000 * 18 17 16 20 20 C 1.53002 * 109.51229 * 177.49270 * 18 17 16 21 21 H 1.08995 * 110.35632 * 185.43540 * 20 18 17 22 22 C 1.54943 * 110.31222 * 307.58380 * 20 18 17 23 23 C 1.55298 * 100.94428 * 155.35670 * 22 20 18 24 24 C 1.54388 * 102.25402 * 325.86892 * 23 22 20 25 25 O 1.43240 * 107.58878 * 21.35290 * 24 23 22 26 26 C 1.47154 * 120.98411 * 90.00182 * 14 11 10 27 27 C 1.52996 * 117.49748 * 230.45739 * 9 7 2 28 28 C 1.52997 * 117.49610 * 299.11614 * 9 7 2 29 29 H 0.97001 * 120.00031 * 5.02640 * 1 2 3 30 30 H 1.09005 * 109.47285 * 305.20089 * 10 9 7 31 31 H 1.09001 * 109.47318 * 185.19998 * 10 9 7 32 32 H 1.08996 * 109.67863 * 350.23665 * 15 14 11 33 33 H 1.08994 * 109.67769 * 110.75550 * 15 14 11 34 34 H 1.09000 * 109.51058 * 67.62014 * 16 15 14 35 35 H 1.08994 * 109.51266 * 187.77342 * 16 15 14 36 36 H 1.08996 * 111.12477 * 273.27608 * 22 20 18 37 37 H 1.09004 * 111.12502 * 37.43718 * 22 20 18 38 38 H 1.09006 * 110.85315 * 207.67904 * 23 22 20 39 39 H 1.09004 * 111.02703 * 84.13593 * 23 22 20 40 40 H 1.09007 * 109.82774 * 261.84479 * 24 23 22 41 41 H 1.09000 * 109.83367 * 140.87149 * 24 23 22 42 42 H 1.09000 * 109.68028 * 9.75996 * 26 14 11 43 43 H 1.09000 * 109.71139 * 249.22849 * 26 14 11 44 44 H 1.08998 * 117.49546 * 215.00191 * 27 9 7 45 45 H 1.09000 * 117.49746 * 0.02562 * 27 9 7 46 46 H 1.08997 * 117.50050 * 359.97184 * 28 9 7 47 47 H 1.08999 * 117.50098 * 144.97565 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0771 -1.1983 -0.1270 9 6 1.2614 -2.4933 0.1754 10 6 0.6668 -3.0914 -1.1011 11 16 2.0070 -3.5625 -2.2293 12 8 2.8242 -4.5654 -1.6415 13 8 2.5804 -2.4100 -2.8311 14 7 1.2431 -4.3377 -3.4774 15 6 1.0175 -5.7914 -3.4415 16 6 1.5208 -6.3915 -4.7594 17 8 0.9322 -5.6844 -5.8537 18 6 1.2847 -4.3003 -5.9136 19 1 2.3690 -4.2020 -5.9683 20 6 0.6509 -3.6648 -7.1527 21 1 0.9881 -2.6344 -7.2648 22 6 1.0028 -4.4865 -8.4183 23 6 -0.1801 -4.1110 -9.3519 24 6 -1.3476 -3.9529 -8.3542 25 8 -0.7818 -3.7133 -7.0603 26 6 0.7694 -3.5932 -4.6550 27 6 1.7804 -3.4659 1.2362 28 6 0.4826 -2.6909 1.4774 29 1 -0.4850 0.8368 -0.0736 30 1 0.0274 -2.3530 -1.5848 31 1 0.0774 -3.9730 -0.8490 32 1 1.5658 -6.2274 -2.6065 33 1 -0.0472 -5.9949 -3.3278 34 1 2.6060 -6.3016 -4.8093 35 1 1.2391 -7.4431 -4.8116 36 1 1.9546 -4.1667 -8.8423 37 1 1.0098 -5.5551 -8.2035 38 1 -0.3830 -4.9122 -10.0626 39 1 0.0149 -3.1733 -9.8724 40 1 -1.9429 -4.8658 -8.3341 41 1 -1.9724 -3.1090 -8.6467 42 1 1.1533 -2.5735 -4.6235 43 1 -0.3204 -3.5748 -4.6644 44 1 1.6984 -4.5320 1.0246 45 1 2.6591 -3.1659 1.8071 46 1 0.5082 -1.8815 2.2070 47 1 -0.4534 -3.2468 1.4246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590749614.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:19 Heat of formation + Delta-G solvation = -130.066683 kcal Electronic energy + Delta-G solvation = -30174.616505 eV Core-core repulsion = 26064.759194 eV Total energy + Delta-G solvation = -4109.857310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.08442 -38.50368 -36.76194 -36.35778 -35.17195 -34.58694 -32.44413 -32.13884 -32.04587 -28.90293 -28.16648 -26.59926 -25.43470 -24.21372 -22.31826 -21.67307 -21.21806 -20.59330 -19.54995 -18.35590 -17.31488 -17.27870 -16.47454 -16.43337 -15.81859 -15.61267 -15.34701 -14.91140 -14.78976 -14.65999 -14.30912 -14.05021 -13.98972 -13.77169 -13.41031 -13.09487 -12.99955 -12.15591 -11.97400 -11.94928 -11.84486 -11.68805 -11.61880 -11.43224 -11.30348 -11.28168 -11.04920 -10.99286 -10.95669 -10.93856 -10.59641 -10.49333 -10.40533 -10.12696 -10.04710 -9.70871 -9.60856 -8.96359 -8.67622 -8.56419 -8.06248 -6.13756 -4.24659 0.99561 3.23819 3.30566 3.36185 3.41028 3.55258 3.69156 4.32221 4.37049 4.46069 4.56543 4.69716 4.78697 4.85900 4.91784 4.99181 5.09127 5.10917 5.13645 5.19123 5.25407 5.35147 5.40097 5.47690 5.52377 5.54414 5.58176 5.64857 5.72262 5.72354 5.84501 5.96224 6.01342 6.09844 6.21346 6.28160 6.38463 6.61443 6.70750 6.74885 6.88866 6.99086 7.12755 7.24726 7.38546 7.80202 8.20076 8.80579 9.46501 10.93894 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.003617 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.666900 B = 7739.283452 C = 8795.827016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.551 4.551 11 S 2.605 3.395 12 O -0.971 6.971 13 O -0.947 6.947 14 N -1.014 6.014 15 C 0.083 3.917 16 C 0.053 3.947 17 O -0.368 6.368 18 C 0.084 3.916 19 H 0.075 0.925 20 C 0.089 3.911 21 H 0.089 0.911 22 C -0.147 4.147 23 C -0.156 4.156 24 C 0.053 3.947 25 O -0.368 6.368 26 C 0.093 3.907 27 C -0.208 4.208 28 C -0.141 4.141 29 H 0.263 0.737 30 H 0.134 0.866 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.024 -11.109 -15.674 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.684 4.684 11 S 2.704 3.296 12 O -0.962 6.962 13 O -0.937 6.937 14 N -0.850 5.850 15 C -0.043 4.043 16 C -0.026 4.026 17 O -0.287 6.287 18 C 0.024 3.976 19 H 0.093 0.907 20 C 0.030 3.970 21 H 0.107 0.893 22 C -0.185 4.185 23 C -0.193 4.193 24 C -0.024 4.024 25 O -0.287 6.287 26 C -0.033 4.033 27 C -0.245 4.245 28 C -0.180 4.180 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.486 -10.907 -15.519 19.027 hybrid contribution -0.230 1.004 0.136 1.039 sum -1.716 -9.904 -15.383 18.376 Atomic orbital electron populations 1.69977 1.06048 1.27223 1.47649 1.24952 0.94797 0.99226 0.93304 0.86582 0.80132 0.82824 0.78666 1.20033 1.21035 1.19423 1.20513 0.93655 0.88607 1.52664 0.91402 1.18294 0.99015 0.94343 0.84314 1.30006 1.16412 1.08460 1.13544 1.05299 0.76737 0.73465 0.74096 1.93473 1.65274 1.59309 1.78094 1.93519 1.75059 1.50394 1.74763 1.58265 1.77747 1.15322 1.33690 1.22048 1.02033 0.80519 0.99726 1.22890 0.97490 0.96151 0.86022 1.87920 1.72454 1.20532 1.47791 1.22538 0.98254 0.82621 0.94156 0.90741 1.23038 0.81927 0.98492 0.93500 0.89325 1.23233 0.98659 1.02309 0.94310 1.23111 0.95269 1.02449 0.98504 1.23077 0.95702 1.00802 0.82809 1.88472 1.18311 1.93311 1.28630 1.21988 1.00935 0.96327 0.84044 1.23194 0.98696 0.95993 1.06662 1.22552 0.92554 1.01030 1.01868 0.92690 0.84794 0.88417 0.88042 0.90918 0.92678 0.87900 0.90074 0.89044 0.90183 0.90663 0.91454 0.91607 0.87838 0.89807 0.90725 0.89518 0.89557 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.22 12.98 55.43 0.72 -23.50 16 2 C 0.08 2.26 5.38 -17.82 -0.10 2.16 16 3 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.25 8.18 -34.44 -0.28 -14.53 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16 10 C -0.55 -11.86 6.03 37.16 0.22 -11.63 16 11 S 2.60 53.69 5.21 -107.50 -0.56 53.13 16 12 O -0.97 -21.15 16.62 -57.54 -0.96 -22.10 16 13 O -0.95 -22.51 16.28 -57.54 -0.94 -23.45 16 14 N -1.01 -16.52 3.27 -113.06 -0.37 -16.89 16 15 C 0.08 1.10 6.67 -3.53 -0.02 1.08 16 16 C 0.05 0.61 6.99 37.31 0.26 0.87 16 17 O -0.37 -4.75 9.21 -39.73 -0.37 -5.12 16 18 C 0.08 1.09 2.76 -26.58 -0.07 1.02 16 19 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 20 C 0.09 1.00 3.34 -25.70 -0.09 0.91 16 21 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 22 C -0.15 -1.31 6.51 -24.49 -0.16 -1.47 16 23 C -0.16 -1.17 7.02 -24.79 -0.17 -1.35 16 24 C 0.05 0.50 7.79 37.88 0.30 0.79 16 25 O -0.37 -4.68 10.12 -39.73 -0.40 -5.08 16 26 C 0.09 1.42 5.89 -3.53 -0.02 1.40 16 27 C -0.21 -4.60 9.96 -26.70 -0.27 -4.87 16 28 C -0.14 -3.24 9.49 -26.70 -0.25 -3.49 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.13 3.03 8.14 -51.92 -0.42 2.61 16 31 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 32 H 0.10 1.33 6.88 -51.93 -0.36 0.97 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.88 7.12 -51.93 -0.37 0.51 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 1.66 6.88 -51.93 -0.36 1.31 16 43 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 44 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 46 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 47 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -33.10 386.55 -10.70 -43.80 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.78 Total: 5.23 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: -0.86 Total: -28.26 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.35 Total: -40.38 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.66 Total: -55.75 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 53.69 SS G_CDS: -0.56 Total: 53.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.10 -10.70 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590749614.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.267 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds